Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008847_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:8:22502119:22507544:-1 gene:Zm00001d008847 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nucleosome/chromatin assembly factor D110 description: nucleosome/chromatin assembly factor D110
Sequence

ATGAAAGTCCCCAGAGCATATCAGCTTGGAGTCAGGATTAAGGCTGGCCTGTTCTACAGA
TTTATTGGCTTCCGTGAACAGGATGTAAGCAACTTGACCAACTTCATACAAAAGAATATG
GGTGTCACACCAGATGAAAAACAGCTTTCTGTTAGTGGCCAGAATTGGGGAGGGATTGAT
ATAGATGGAAACATGCTAACCTTTATGGTTGGTTCAAAGCAAGCATTTGAGGTGTCCCTA
CCAGATGTTGCACAAACCCAGATGCAAGGAAAAACAGATGTTCTCTTAGAGCTTCATGTT
GATGATACTACTGGAGCCAATGAGAAAGACTCCCTCATGGATTTGAGTTTTCATGTGCCT
ACTTCGAATACTCAGTTTGTTGGGGATGAGAGTCGCCCTCCGGCTCATATTTTATGGGAG
ACCATATTGAAATTTGCTGATGTTGGTTCTTCTGAAGAACCAGTTGTCACATTTGAAGGA
ATTGCGATCCTTACACCAAGAGGACGTTATAGTGTTGAACTTCATCTGTCATTTCTGCGA
CTCCAAGGACAAGCTAACGATTTTAAAATCCAATACAGCAGTATTGTTCGCCTCTTTCTT
TTGCCGAAGTCAAACAATCCTCATACATTTGTTGTTATCACTCTTGATCCACCAATCCGT
AAAGGACAAACATTGTATCCTCACATTGTTATTCAGTTTGAGACAGAGGCAGTAGTGGAA
AGAGATCTGGCATTGAGTAAAGAACTGTTGGTTGAAAAATACAAGGACAGGCTTGAGGAA
TCTTACAAGGGTCTAATACATGAGGTATTTACCAAAGTCCTTCGTGGTCTATCTGGTGCT
AAAGTCACAAGGCCAGGTTCTTTCAGAAGTTGCCAAGATGGATATGCAGTTAAATCATCT
CTCAAAGCTGAAGATGGACTGTTGTATCCACTGGAAAAGGGTTTCTTCTTCCTGCCAAAG
CCACCTACACTCATTCTTCATGAGGAGATTGAGTTTGTTGAGTTTGAACGTCATGGTGCT
GGGGGTGCCAGTATATCATCTCACTATTTTGACCTCCTTGTCAAACTGAAAAATGACCAA
GAGCATCTCTTCAGAAACATTCAAAGGAATGAATACCACAACCTCTTCAATTTCATCAAT
GGAAAGAACATTAAAATAATGAACCTTGGAGGAGATGGTCAAGGTGCAAGTGGTGTAGTT
ACAGATGTTCTACGAGACACTGATGATGATGCTGTTGATCCACATCTAGAGCGTATTAAG
AATCAGGCCGGGGATGAGGAAAGCGATGAAGAGGATGAAGATTTCGTTGCAGACAAGGAT
GATAGTGGATCTCCTACTGATGACTCAGGTGATGAGGAATCAGATGCTAGTGATAGTGGT
GGTGAAAAGGAGAAATCATCCAAGAAGGAAGCAAGCAGTTCAAAGCCAGTTCAGAAAAGA
AAGCATAAGGGCAGGGATGACGAAGGACAAGAGAAGAAAAAGCCAAAGAAGAAAAAAGAT
CCGAATGCTCCGAAACGAGCCATGACCCCGTTCATGTATTTCTCAATGGCTGAGCGAGGA
AACATGAAGAGCAGCAACCCAGATTTGCCTACGACTGAGATCGCAAAGAAGCTTGGGGAG
ATGTGGCAAAAGATGTCAGGCGAAGAGAAACAGCCTTACATCCAGCAGGCCCAGGTCGAC
AAGAAACGTTATGAAAAAGAATCCGCTGTCTATCGCGGTGAAGCTACAGTCGATGTGGAT
TCTGGGAACGAGTCTGACTAG

Peptide Sequence

PEP ID

Zm00001d008847_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:8:22502119:22507544:-1 gene:Zm00001d008847 transcript:Zm00001d008847_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nucleosome/chromatin assembly factor D110 description: nucleosome/chromatin assembly factor D110
Sequence

MKVPRAYQLGVRIKAGLFYRFIGFREQDVSNLTNFIQKNMGVTPDEKQLSVSGQNWGGID
IDGNMLTFMVGSKQAFEVSLPDVAQTQMQGKTDVLLELHVDDTTGANEKDSLMDLSFHVP
TSNTQFVGDESRPPAHILWETILKFADVGSSEEPVVTFEGIAILTPRGRYSVELHLSFLR
LQGQANDFKIQYSSIVRLFLLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVE
RDLALSKELLVEKYKDRLEESYKGLIHEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSS
LKAEDGLLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGGASISSHYFDLLVKLKNDQ
EHLFRNIQRNEYHNLFNFINGKNIKIMNLGGDGQGASGVVTDVLRDTDDDAVDPHLERIK
NQAGDEESDEEDEDFVADKDDSGSPTDDSGDEESDASDSGGEKEKSSKKEASSSKPVQKR
KHKGRDDEGQEKKKPKKKKDPNAPKRAMTPFMYFSMAERGNMKSSNPDLPTTEIAKKLGE
MWQKMSGEEKQPYIQQAQVDKKRYEKESAVYRGEATVDVDSGNESD

Transcript Sequence

Transcript ID

Zm00001d008847_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:22502119:22507544:-1 gene:Zm00001d008847 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nucleosome/chromatin assembly factor D110 description: nucleosome/chromatin assembly factor D110
Sequence

GGGTAACTAATGGTGTTTTCAGAACCCTGGTCAGTTTAAAGTGCATTCTGGTGGACTTGC
ATGGAAGAGACAAGGTGGAGGAAAGACCATTGAGATCGACAAAGCTGATGTAACTGCAGT
TACTTGGATGAAAGTCCCCAGAGCATATCAGCTTGGAGTCAGGATTAAGGCTGGCCTGTT
CTACAGATTTATTGGCTTCCGTGAACAGGATGTAAGCAACTTGACCAACTTCATACAAAA
GAATATGGGTGTCACACCAGATGAAAAACAGCTTTCTGTTAGTGGCCAGAATTGGGGAGG
GATTGATATAGATGGAAACATGCTAACCTTTATGGTTGGTTCAAAGCAAGCATTTGAGGT
GTCCCTACCAGATGTTGCACAAACCCAGATGCAAGGAAAAACAGATGTTCTCTTAGAGCT
TCATGTTGATGATACTACTGGAGCCAATGAGAAAGACTCCCTCATGGATTTGAGTTTTCA
TGTGCCTACTTCGAATACTCAGTTTGTTGGGGATGAGAGTCGCCCTCCGGCTCATATTTT
ATGGGAGACCATATTGAAATTTGCTGATGTTGGTTCTTCTGAAGAACCAGTTGTCACATT
TGAAGGAATTGCGATCCTTACACCAAGAGGACGTTATAGTGTTGAACTTCATCTGTCATT
TCTGCGACTCCAAGGACAAGCTAACGATTTTAAAATCCAATACAGCAGTATTGTTCGCCT
CTTTCTTTTGCCGAAGTCAAACAATCCTCATACATTTGTTGTTATCACTCTTGATCCACC
AATCCGTAAAGGACAAACATTGTATCCTCACATTGTTATTCAGTTTGAGACAGAGGCAGT
AGTGGAAAGAGATCTGGCATTGAGTAAAGAACTGTTGGTTGAAAAATACAAGGACAGGCT
TGAGGAATCTTACAAGGGTCTAATACATGAGGTATTTACCAAAGTCCTTCGTGGTCTATC
TGGTGCTAAAGTCACAAGGCCAGGTTCTTTCAGAAGTTGCCAAGATGGATATGCAGTTAA
ATCATCTCTCAAAGCTGAAGATGGACTGTTGTATCCACTGGAAAAGGGTTTCTTCTTCCT
GCCAAAGCCACCTACACTCATTCTTCATGAGGAGATTGAGTTTGTTGAGTTTGAACGTCA
TGGTGCTGGGGGTGCCAGTATATCATCTCACTATTTTGACCTCCTTGTCAAACTGAAAAA
TGACCAAGAGCATCTCTTCAGAAACATTCAAAGGAATGAATACCACAACCTCTTCAATTT
CATCAATGGAAAGAACATTAAAATAATGAACCTTGGAGGAGATGGTCAAGGTGCAAGTGG
TGTAGTTACAGATGTTCTACGAGACACTGATGATGATGCTGTTGATCCACATCTAGAGCG
TATTAAGAATCAGGCCGGGGATGAGGAAAGCGATGAAGAGGATGAAGATTTCGTTGCAGA
CAAGGATGATAGTGGATCTCCTACTGATGACTCAGGTGATGAGGAATCAGATGCTAGTGA
TAGTGGTGGTGAAAAGGAGAAATCATCCAAGAAGGAAGCAAGCAGTTCAAAGCCAGTTCA
GAAAAGAAAGCATAAGGGCAGGGATGACGAAGGACAAGAGAAGAAAAAGCCAAAGAAGAA
AAAAGATCCGAATGCTCCGAAACGAGCCATGACCCCGTTCATGTATTTCTCAATGGCTGA
GCGAGGAAACATGAAGAGCAGCAACCCAGATTTGCCTACGACTGAGATCGCAAAGAAGCT
TGGGGAGATGTGGCAAAAGATGTCAGGCGAAGAGAAACAGCCTTACATCCAGCAGGCCCA
GGTCGACAAGAAACGTTATGAAAAAGAATCCGCTGTCTATCGCGGTGAAGCTACAGTCGA
TGTGGATTCTGGGAACGAGTCTGACTAGAGATCCAAGCTCTTGGGCTGGCATGGTGGCAC
GGGATGAAAGTCTAGTGCCATGTGTGCTATTGTTATGTCAGCAACCGTTGCCTCCAACAT
TGCTGACAGTAAAGAGAGTTTCTCTCGCAGCTTACCTCTGCAGGGCAAAAGAATGTACGA
GTGTAGTCTAGTGATTTTGTGTAAAACAACCAACATACGTGGTTTTCTGAGAGATGGTAA
GACGTCAGTTTAACT