Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008827_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:8:21836371:21838654:1 gene:Zm00001d008827 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:umc124a(chk) description:Probable choline kinase 2
Sequence

ATGACCAACGAGGTCTTCCGGATCACCTGGCCCGGCGGCGAGGCCGAGGGCAACGGCCCG
CGCAAGGTGCTCGTGCGCATCTACGGCCGGGGCGTCGAGGTCTTCTTCGACCGCGCCGAC
GAGGTCCGCACCTTCGAGTGCATGTCGCGCCACGGCCAGGGGCCCCGCCTCCTGGGCCGC
TTCGCCAACGGCCGCGTCGAGGAGTTCATCAACGCCAGGACCCTCTCCGCCGCGGATCTG
CGCGACCCGGAGATGTCCGCGCTGATTGCCAGGAAGCTGCGCGAGTTTCACGATCTCGAC
ATGCCTGGACCTAGGGACGTGTCATTGTGGCAGAGGCTCAAGCGGTGGCTTGGGGAGGCT
CGTGACAGGTGTTCTGAGGAAGAGTCTAACCAATTTCAGCTGAATAAACTAGGTGATGAG
ATTTCAGTGCTGGAGAAGACGCTCTCGGGGCTCCAACAGTCAGTAGGATTCTGCCATAAC
GATCTGCAGTATGGAAATATTATGATATATGAAGAGACCAGACAAGTCACCTTGATAGAC
TATGAATATGCGAGTTTTAACCCAGTCGCATTCGACATTGCTAATCACTTCTGTGAGATG
GCTGCTGATTACCATACATCAACACCACATGTGTTGGATTTTACGAAATATCCTGACACT
GGGGAGCAGAGAAGATTCGTTGAGGCATACCTTAGCTCTGCAGGTAAAAAGCCAACGGAT
GGGGAAGTTGAAGAACTGCTAGGGTTGATAGCAAAGTACACTCTTGCGAGCCATCTCTTC
TGGGGCCTGTGGGGAATAATCTCGGCGCACGTGAACGAAAATATCGACTTCGCGTACAAG
GAGTATGCAAGGCAGCGCTTGGATCAGTACTGGCAAACAAAACCTCGAATTCTTGGACCC
AAGTGA

Peptide Sequence

PEP ID

Zm00001d008827_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:8:21836371:21838654:1 gene:Zm00001d008827 transcript:Zm00001d008827_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:umc124a(chk) description:Probable choline kinase 2
Sequence

MTNEVFRITWPGGEAEGNGPRKVLVRIYGRGVEVFFDRADEVRTFECMSRHGQGPRLLGR
FANGRVEEFINARTLSAADLRDPEMSALIARKLREFHDLDMPGPRDVSLWQRLKRWLGEA
RDRCSEEESNQFQLNKLGDEISVLEKTLSGLQQSVGFCHNDLQYGNIMIYEETRQVTLID
YEYASFNPVAFDIANHFCEMAADYHTSTPHVLDFTKYPDTGEQRRFVEAYLSSAGKKPTD
GEVEELLGLIAKYTLASHLFWGLWGIISAHVNENIDFAYKEYARQRLDQYWQTKPRILGP
K

Transcript Sequence

Transcript ID

Zm00001d008827_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:21836371:21838654:1 gene:Zm00001d008827 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:umc124a(chk) description:Probable choline kinase 2
Sequence

AGGCGGCATTCCCAGCCTCCCAAACCCATTTCCCTCTCCGATCAAATCAAATCAAACTCA
AACCGACACGGGACCCACGCCGCATCTCCGCCTCCGCAGATCGCCGGGGCGCCATGACCA
ACGAGGTCTTCCGGATCACCTGGCCCGGCGGCGAGGCCGAGGGCAACGGCCCGCGCAAGG
TGCTCGTGCGCATCTACGGCCGGGGCGTCGAGGTCTTCTTCGACCGCGCCGACGAGGTCC
GCACCTTCGAGTGCATGTCGCGCCACGGCCAGGGGCCCCGCCTCCTGGGCCGCTTCGCCA
ACGGCCGCGTCGAGGAGTTCATCAACGCCAGGACCCTCTCCGCCGCGGATCTGCGCGACC
CGGAGATGTCCGCGCTGATTGCCAGGAAGCTGCGCGAGTTTCACGATCTCGACATGCCTG
GACCTAGGGACGTGTCATTGTGGCAGAGGCTCAAGCGGTGGCTTGGGGAGGCTCGTGACA
GGTGTTCTGAGGAAGAGTCTAACCAATTTCAGCTGAATAAACTAGGTGATGAGATTTCAG
TGCTGGAGAAGACGCTCTCGGGGCTCCAACAGTCAGTAGGATTCTGCCATAACGATCTGC
AGTATGGAAATATTATGATATATGAAGAGACCAGACAAGTCACCTTGATAGACTATGAAT
ATGCGAGTTTTAACCCAGTCGCATTCGACATTGCTAATCACTTCTGTGAGATGGCTGCTG
ATTACCATACATCAACACCACATGTGTTGGATTTTACGAAATATCCTGACACTGGGGAGC
AGAGAAGATTCGTTGAGGCATACCTTAGCTCTGCAGGTAAAAAGCCAACGGATGGGGAAG
TTGAAGAACTGCTAGGGTTGATAGCAAAGTACACTCTTGCGAGCCATCTCTTCTGGGGCC
TGTGGGGAATAATCTCGGCGCACGTGAACGAAAATATCGACTTCGCGTACAAGGAGTATG
CAAGGCAGCGCTTGGATCAGTACTGGCAAACAAAACCTCGAATTCTTGGACCCAAGTGAT
GAGTCGTTGCTTTTTGTAGGGGGTCCTTGGCCAGCTAGTCATGTGAATTCTGTTTGTCAG
TAGCGGCTAGTAGCTGCCAGTTTTTGACTGCAGATTGTTCAGCTCGCTGTGACCTGTGTC
GTGACCATATTCTTGACTTACGGGGTGTAATTATTTTGCCTGGTCTTAGGCTAAGGTAAC
CAGTCTTTCTATCCTAATGTAAATAGTACAGTCTATAATGACCTTATCCTCACATGGTTC
TG