Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008621_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:8:14957180:14962557:-1 gene:Zm00001d008621 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein TRM32
Sequence

ATGGCCCAGCTGTTGCACCATCAGGATTCTGGGTTCTATGACAAGGAATTACATGGGTGC
CGATGGGGTATTCTTCAATTCTTTGGATTTCGCCGTCGCCAGCGGTCCGCAAAGATGCAA
CCTGACAAGAAACATGGTCCGGAGAAAAACAGTCGTGGAAGTAGACGCCGAAGCCGCTCC
TATGCTCCATTGAAAAACGAAGACAGTGAAATTTTGGATGATGACAAAAATACTGAGGTT
ACAAAAAAACAGAAGGCCTCCCAAAAAAATTCTGGCAAGGCTAGTTTGAGGTCCTTGATT
CTAAGGAAATTATATGGAAAGGAAGGTCAGGAAGAAAAGATGCTTCCAGTTGCACCAAAG
CTACTCCGCACTATTTCGGTATACTATCTGGAAAATAATGAATATGTTCTTGATGGTGAA
TCCACTTCGAGTGGTGATGGTTCTTCACATAGTACTAACTCATCGATGCAAAATGCTACC
AATATGAATTTGCACCATGCTAGATGTAGCATCCCAGATGGTTGTGGTAGTGATTCCAGT
TCTTCACTTCTTTTAAAGACAGACGACATCTCCATGAAGCGAAAGAGCCACCGTAGCATT
TCAATGGACGGGGTTCTTCACAAGGTCCCTTATGGGAAGAAGGTGTCTGGAGATGTGATC
AGTGAAGGTCTCCCCCGATCAGCCTCTGCGACGTATGATAGGGATGGTGTGAAACCTTAC
TTTGGTACTGCTACAAAGAGGCATGTAAACCAAGGTTTTCGGCGTTCACGTTCCCTCAGT
GAATCTTGGGAAAGTTACTCACGCTTACTTGATTCCATCTCAAGCAATGAATCTAAAAGA
GTACTGACAAGCTCTAAGTCTACTAGGGTTCATTCCCCAGATGGCCCTAGTGTGATTGCT
TCACTGCAAAGAACTTCTGAAGCCTTCAGGTCCCAAGGTTTGGATAAACGTGATGAAAAT
CTTGTAACTGCAGAAGATGCATCGGCACCACATTTTGAAGAGAAAACTGACGTCGATGTA
GATGTGGAAGTTGCTAAGGGTGAGAGCTCAAGCGATACGGTTCCTGGTGGCTCTGAGAAT
CCTCCTTTACCTGACGAGTACGTTGATCACAAAAGTGAAGAAGACACATGCACTGCTCCT
TCACCTTCAGAAGCTGTTGATGTTTCAGAAGAACAGACAGTAAGTTGTGATGATAACAAT
CAGGTTCCCTCATCTGAGGTCAAGCTGTATGGCGACTGTTCAACATCATCAGGAATTGAC
ATCCCAGAAGAACATGCAGAGATTTATGACGATAACCAAATCCACTCATCAACACAGGCT
GATTCATATACTTCTCTATCTTCAAAGGGCATCACCATTTCAGAAGAGCACACTTCAACT
TCTCATGAAAACCAAATGCACCCATTCCAGATTTCAAAACCCATAGAAGGTACCTTTTGT
GCTCCTTACCCCGGTGGCGAGTTTGAAGCAGACATAAGTCTAAGCTGTGAACAAGAAACT
GAAAGCCCAATGTCTATTCTTCACGTGGCCTTCTCAGATGATCCTGATAGTCCGGTGAAA
CACACCCCGCTGGATGATACGTTGTTGAACCCAAGAATTCTCCATTTAGATAATGCTGAT
GCTTCAGCTGGCACTGCTGCCATACAAAAAGGCGATTTTGACGGTCTCCAAGTAGATCCA
AGGCATGAAATTGAGTTCAACCATGTGAAGGATATATTCAAGAAGTCAAGTTTCAGCAAT
GAGATACTGTTTGATGAATGGTGTTCACAGAACATCACAGCTCTCCAAGAGGTGGATTGC
CAGCACTACGAGGCCGCCGCAGCATCATTTGACTTCACGGACATGTCTGCTGATCAGCTA
CTTCTGTTCGACCTGACAAACGAAGGTCTGCTGGACATCTACAAGAAATACTCTGTTTCC
GAGTCCAGATTCTCCTGGTTCTCCTCTTTTGACCGACCAAAACCTGTCGGAAACCGTGTC
CTCAAGGAGCTGTGGTCTGGATTGAGCTGTCATCTGGATGAACGGCCACGGTCCAGCATC
GAAGTCGACACGATTTTGTCGAATGACCTAGTAGCCAGGAGCGACCCCTGGACGACTTTT
TCGGGAGATGCTGATCATGTGGGGAACAAGTTGGTAGACTTTGTATTTGACAAGCTTCTG
ACTGAGCTCGTTCTTCAGCTTGCAGAGTTTTGA

Peptide Sequence

PEP ID

Zm00001d008621_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:8:14957180:14962557:-1 gene:Zm00001d008621 transcript:Zm00001d008621_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein TRM32
Sequence

MAQLLHHQDSGFYDKELHGCRWGILQFFGFRRRQRSAKMQPDKKHGPEKNSRGSRRRSRS
YAPLKNEDSEILDDDKNTEVTKKQKASQKNSGKASLRSLILRKLYGKEGQEEKMLPVAPK
LLRTISVYYLENNEYVLDGESTSSGDGSSHSTNSSMQNATNMNLHHARCSIPDGCGSDSS
SSLLLKTDDISMKRKSHRSISMDGVLHKVPYGKKVSGDVISEGLPRSASATYDRDGVKPY
FGTATKRHVNQGFRRSRSLSESWESYSRLLDSISSNESKRVLTSSKSTRVHSPDGPSVIA
SLQRTSEAFRSQGLDKRDENLVTAEDASAPHFEEKTDVDVDVEVAKGESSSDTVPGGSEN
PPLPDEYVDHKSEEDTCTAPSPSEAVDVSEEQTVSCDDNNQVPSSEVKLYGDCSTSSGID
IPEEHAEIYDDNQIHSSTQADSYTSLSSKGITISEEHTSTSHENQMHPFQISKPIEGTFC
APYPGGEFEADISLSCEQETESPMSILHVAFSDDPDSPVKHTPLDDTLLNPRILHLDNAD
ASAGTAAIQKGDFDGLQVDPRHEIEFNHVKDIFKKSSFSNEILFDEWCSQNITALQEVDC
QHYEAAAASFDFTDMSADQLLLFDLTNEGLLDIYKKYSVSESRFSWFSSFDRPKPVGNRV
LKELWSGLSCHLDERPRSSIEVDTILSNDLVARSDPWTTFSGDADHVGNKLVDFVFDKLL
TELVLQLAEF

Transcript Sequence

Transcript ID

Zm00001d008621_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:14957180:14962557:-1 gene:Zm00001d008621 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein TRM32
Sequence

CGGATCCCCAGTCAGTTTCTTTCCATTCGCATTCATTCATTCCCGTTTCGTTCCTCACCA
GCTCCTCCTTCCAGAACCCCAGAGTCTCCGACCCTCGATTCCGAAACCTACCGGATTTGC
GGCTGCTGGAGTCGCCGTCGTCGTGGGAAACCGATCAGGTGGCAAGTAAAGCACAAGGGT
GGACTGTGTGGTGCTCATAAGGAACAACCCTCTTCTTTTCTGGCGGGAGAATACCAAATG
GCCCAGCTGTTGCACCATCAGGATTCTGGGTTCTATGACAAGGAATTACATGGGTGCCGA
TGGGGTATTCTTCAATTCTTTGGATTTCGCCGTCGCCAGCGGTCCGCAAAGATGCAACCT
GACAAGAAACATGGTCCGGAGAAAAACAGTCGTGGAAGTAGACGCCGAAGCCGCTCCTAT
GCTCCATTGAAAAACGAAGACAGTGAAATTTTGGATGATGACAAAAATACTGAGGTTACA
AAAAAACAGAAGGCCTCCCAAAAAAATTCTGGCAAGGCTAGTTTGAGGTCCTTGATTCTA
AGGAAATTATATGGAAAGGAAGGTCAGGAAGAAAAGATGCTTCCAGTTGCACCAAAGCTA
CTCCGCACTATTTCGGTATACTATCTGGAAAATAATGAATATGTTCTTGATGGTGAATCC
ACTTCGAGTGGTGATGGTTCTTCACATAGTACTAACTCATCGATGCAAAATGCTACCAAT
ATGAATTTGCACCATGCTAGATGTAGCATCCCAGATGGTTGTGGTAGTGATTCCAGTTCT
TCACTTCTTTTAAAGACAGACGACATCTCCATGAAGCGAAAGAGCCACCGTAGCATTTCA
ATGGACGGGGTTCTTCACAAGGTCCCTTATGGGAAGAAGGTGTCTGGAGATGTGATCAGT
GAAGGTCTCCCCCGATCAGCCTCTGCGACGTATGATAGGGATGGTGTGAAACCTTACTTT
GGTACTGCTACAAAGAGGCATGTAAACCAAGGTTTTCGGCGTTCACGTTCCCTCAGTGAA
TCTTGGGAAAGTTACTCACGCTTACTTGATTCCATCTCAAGCAATGAATCTAAAAGAGTA
CTGACAAGCTCTAAGTCTACTAGGGTTCATTCCCCAGATGGCCCTAGTGTGATTGCTTCA
CTGCAAAGAACTTCTGAAGCCTTCAGGTCCCAAGGTTTGGATAAACGTGATGAAAATCTT
GTAACTGCAGAAGATGCATCGGCACCACATTTTGAAGAGAAAACTGACGTCGATGTAGAT
GTGGAAGTTGCTAAGGGTGAGAGCTCAAGCGATACGGTTCCTGGTGGCTCTGAGAATCCT
CCTTTACCTGACGAGTACGTTGATCACAAAAGTGAAGAAGACACATGCACTGCTCCTTCA
CCTTCAGAAGCTGTTGATGTTTCAGAAGAACAGACAGTAAGTTGTGATGATAACAATCAG
GTTCCCTCATCTGAGGTCAAGCTGTATGGCGACTGTTCAACATCATCAGGAATTGACATC
CCAGAAGAACATGCAGAGATTTATGACGATAACCAAATCCACTCATCAACACAGGCTGAT
TCATATACTTCTCTATCTTCAAAGGGCATCACCATTTCAGAAGAGCACACTTCAACTTCT
CATGAAAACCAAATGCACCCATTCCAGATTTCAAAACCCATAGAAGGTACCTTTTGTGCT
CCTTACCCCGGTGGCGAGTTTGAAGCAGACATAAGTCTAAGCTGTGAACAAGAAACTGAA
AGCCCAATGTCTATTCTTCACGTGGCCTTCTCAGATGATCCTGATAGTCCGGTGAAACAC
ACCCCGCTGGATGATACGTTGTTGAACCCAAGAATTCTCCATTTAGATAATGCTGATGCT
TCAGCTGGCACTGCTGCCATACAAAAAGGCGATTTTGACGGTCTCCAAGTAGATCCAAGG
CATGAAATTGAGTTCAACCATGTGAAGGATATATTCAAGAAGTCAAGTTTCAGCAATGAG
ATACTGTTTGATGAATGGTGTTCACAGAACATCACAGCTCTCCAAGAGGTGGATTGCCAG
CACTACGAGGCCGCCGCAGCATCATTTGACTTCACGGACATGTCTGCTGATCAGCTACTT
CTGTTCGACCTGACAAACGAAGGTCTGCTGGACATCTACAAGAAATACTCTGTTTCCGAG
TCCAGATTCTCCTGGTTCTCCTCTTTTGACCGACCAAAACCTGTCGGAAACCGTGTCCTC
AAGGAGCTGTGGTCTGGATTGAGCTGTCATCTGGATGAACGGCCACGGTCCAGCATCGAA
GTCGACACGATTTTGTCGAATGACCTAGTAGCCAGGAGCGACCCCTGGACGACTTTTTCG
GGAGATGCTGATCATGTGGGGAACAAGTTGGTAGACTTTGTATTTGACAAGCTTCTGACT
GAGCTCGTTCTTCAGCTTGCAGAGTTTTGAGTTTCAGGCATTTATTTTTGTCCTTTTCTC
TGCGTTTATTAGGAGTTCTACATTGTGCAAAGGCATGGGATCATTCTGATGTACATAGTA
CAAAATTCCTTTTGTTTTTCCTTTGAGCATAAGGTGATCTGGGGATTAGTGTTGTTAGGT
CCTCCTAGGATAGGAATTCAGTTGATGCACTGGTATAAATGAATGGAAGAGAGAGCAACA
TTTTT