Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008617_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:8:14684089:14689623:1 gene:Zm00001d008617 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription elongation factor (TFIIS) family protein
Sequence

ATGGAGCAGGATGACCAAGAAGGTGTTAGAACCGTAGATGATGATAATTTCATTGATGAC
ACTGGAGTTGATCCAGCTGATCGTTATGGCAGCGATAATGAGCGACATTCACCTGGACGT
TATGCACAGGCTGAGGAGGGTGAGGAGGACGATGAAATCGAACGACTCTTCAAGGGTGGT
AAGAAGAAGAAGAAGAAGAATGATCGCCCTCGTGCAGATATTGGCCTTATAGTGGAACAA
TTCATTGCTGAGTTTGAAGTAGCAGCCGAAGAAGATGCAAACTTGAATAGGCAATCAAAA
CCAGCCATTAACAAACTTATGAAGCTTCCTCTGCTCATAGATGTTCTCTCCAAGAAGAAT
CTTCAGCAGGAATTTCTTGACCACGGAGTTCTCACTCTTCTAAAAAATTGGCTTGAGCCA
TTACCTGATGGAAGCATGCCAAACATGAATATTCGATCTGCTGTACTGAAATTATTAACT
GATTTTCCAATTGACTTGGAACAGTATGACCGAAGAGAGCAGCTTAAGAAAAGTGGTCTG
GGAAAGGTCATTATGTTTTTGTCCAAATCTGACGAGGAGACTACTGCAAATAGGAAATTG
GCTAAGGAGCTGGTTGATAAATGGAGTCGACCAATATTCAACAAGAGCACGAGATTTGAG
GACATGAAGAGATATGATGATGAAAGAGCACCTTACAGGCGGCCACAAATGAAGAAACCT
TCATCGAGTAGCTCTGGAATGGAATCCAGAGATGATGATCTTGATGCTGACTTTTCACAA
CGCAAGTCTGGGCAAAGTAGTTCAAGGCAGCACGCTTCTAGGCCGGAAGCCTCGCCTTTG
GACTTTGTCATTCGTCCACAGTCCAAAATTGACCCTGAGCAGATACGGGCTCGTGCTAAG
CAGGCTGTCCAAGACCAGCGTCGGCTGAAGATGAACAAGAAATTGCAGCAGCTGAAAGCG
CCCAAGAAGAAAAACCTTCAGGCGTCGAAGCTCAGCGTGGAAGGCCGTGGCATGATCAAG
TACCTGTAG

Peptide Sequence

PEP ID

Zm00001d008617_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:8:14684089:14689623:1 gene:Zm00001d008617 transcript:Zm00001d008617_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription elongation factor (TFIIS) family protein
Sequence

MEQDDQEGVRTVDDDNFIDDTGVDPADRYGSDNERHSPGRYAQAEEGEEDDEIERLFKGG
KKKKKKNDRPRADIGLIVEQFIAEFEVAAEEDANLNRQSKPAINKLMKLPLLIDVLSKKN
LQQEFLDHGVLTLLKNWLEPLPDGSMPNMNIRSAVLKLLTDFPIDLEQYDRREQLKKSGL
GKVIMFLSKSDEETTANRKLAKELVDKWSRPIFNKSTRFEDMKRYDDERAPYRRPQMKKP
SSSSSGMESRDDDLDADFSQRKSGQSSSRQHASRPEASPLDFVIRPQSKIDPEQIRARAK
QAVQDQRRLKMNKKLQQLKAPKKKNLQASKLSVEGRGMIKYL

Transcript Sequence

Transcript ID

Zm00001d008617_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:14684089:14689623:1 gene:Zm00001d008617 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription elongation factor (TFIIS) family protein
Sequence

GCGGCGTCGCCGGCTCCCACGGTCCACCGACGACTCTTCTTCCTCACCTCCTCCCGCTCC
AGCTCCAGCTCGTCTCTCTCCTCGCCTCGCGTAGGGTTTCGCTTCCCGTCTCGCCGCCGT
CAGCATGGGGGACAACTACGATGACGAAGGCGAGCCGATCGTGAACCTCGACGAACGGGA
ACCCTCCCCTGAGCATCAGCCGTACGAAGACCTCGATGACGACCTCGACGGCGGCGGCGA
TTGGACCCGCGACCGCTCTCCGACCCCCGTCCACGGCGACGACGGCGGGGCAGGGTCCTC
CTCCAAGCCCCGAAAGCGCCTTCTCAAGAAGGGCGGCGGTGGAGGCATGCCCGGCGATGA
CGGGCTGGATGACTTTGGGTTGGAGGACGAGGACGCGGACCCTTCGGCTGAGGCGAGGAA
GAGGAAGGGCTCGTCGTCGCTGAGGGACCTCGCGAGGGGCGGGGCGGGCAGGGAGAAGAA
GGCTAAGAAAATGCGGATGGAGGACGACGGGAGGGGGAGGGACACTGGGATGGTGAGGGA
TAGGCGGGGATCAGGAGGAAGGGACTCAGGCGGTAGGGATGACCAGGATGATGGGGAGAG
GGAGATCCAGGAGCTCTGGGATACCATTGCTGGTGGTGAGTCAGAGGTAATTTTGACTGT
GTGCAACTGTGCAATATGTTTGATTCAGCTCCTTTTCAATTCTAGCTAGTTGATTAATGC
TTGGATGCCCCTTTTTACTGTACTACATATGTGCATTAGCTAGTTATACTTATACCTACT
TTGAGCTTAATATTAAAGGTTTCTGGAAATTCAACCTCTATCAACTGCTTTTACTGATCA
CTTTATCTGTTGAAGGAGATTGCAATTATGCTTTGCCATGAAATATACTAGTTATCTTTT
TTATCTGCCTAATGTTTTTGGAATTGTCGCTTAATTCTGGTAAGCTGTCGTGATTTGTTG
AGCTTTTCTTGATGGTGAGTGACTGAGTCAACTTTCGGAGCTAGTTTGTTTATCAGTTTG
TGTATTGGTGTGGTTAGTTCATCTGGTTGTAATTGGCATCCTTTAGTAATTAGTATTCAG
ATTACTTTTATGGGTGTTAGTAAGGTACGATGTTTGTAGCCAAGCCTCTTGAACCAGGAT
GTGTAGCATCTCCGGAGTTGTAGCGTTTTTAAAGGGTACTATGTAGGCTATTGACATGTC
AAGTAGGACTGTTATATGCCTCTGGATTAGCTGCAAGGTAGGATTTGCCTTTATGTGGCA
ACTTGGGCAGCATTGTGACATCTTGTTTCTTAAGGAGATTGTATAACTGAAATGCTGTTC
TGTTCACTTCTTTGTATGGAATACTTTCCTTGCGTTTAGTTCCTTCATTTCTTTTTTCTT
CAAGGAGAATTGCTTACTAAGGATCAGGATGGTTGTGTAAATATGTTAGGTGCATATCAA
GCCAGGGTATTGATCTTGCTATCATGCTTTTTAAGACATCACCTTGGTGTCCGGTCGAGT
AGGCTGGGCGTTGGCTTGCCACGGCCAATCAGGCTATGGCGTCCACCTTGCAGCATAAAT
TGTCACCTAGGCACGATTTGGTGCAGTTTAAGGCCTGAGCAGCCTGAGGCAGATGCCGCA
CAAGTGTGGGCATGGGGGAGGAGTGTGCATGGAAAAATTGCATGCGGGAGCAGGTGCGGG
AGATTTGCGCGTGAAGGAGAACGACAGGAGTCACGTGCTGGCGATTGTGTACCTACAGGT
CCCATGAGGCCATAATCCGTCTCTCTCACGCGCCAATTGATAGGGAAGGGGAAACAGAAG
AGGGCACACACCTGGTTCATGGGGGTGGGCGCTGCTAGAGTCTTGCTGCTCCACCTCTTC
TGCTCCATTGATAACACTTCTCTCCTTTGATTTGAGTCTCCCTTCATCTTCTCCATTAAT
TTGTGCCTTCTCTGGTCCTCGTATGCTGATTGATTCATGGCTCTTTTCCCCTTCTCTGTT
GGTTACTGTCTGCAGCCTGGCGTCATGAGGTCACGGAGGTACGTAAGCATCTCTTCCTCT
CCCTTCGGCTTCCCTCCTCTTGGATGTGCACTGCCTCTGCTCTTTACTTGGATATGCTCT
GCAGTTTTCCTATCCTCTGCTTTCTTTCTCTTCCTCTTATTTTCCTGCTTCTCTGCACTT
ATGCTACTTGTATTGTTTTGCACTAGCAGCACTAATTAATTAAGTTATACTATGCAATTA
GAGAGTGTTTTTTTTGACATTGAGAGATACATTTGTTATTTTGCTACATTATATTGTGTA
CTAACACTCCGGTAGCACTACTTATTATGGTATTACATGCTAAGAACATGCAATACTAAG
GTATGCTTTGTTTCTGAACTTCAGTGACATTATATACTCCATCCATTCAGATATGATAGT
CTTTTTTTTACAATGGCACAATGACTAAGGAAAGAGTGGCTTGCTTATCAAGTAATTACT
CCATCCATCGGTAATCCTCGTTAGCCTGCTGTTTTTCCACCATGCGTCTGTTCCATACCA
CATCCCTTTAAATGTGAAGCTGCCAGTTCGTGAGGAGTATAGATGAGAGCAGGTGAGCAG
CCAATTTAAAAAGATATTATAGCAACGTGAAGCACGTACGGGTGGCAGATTAAATGGAAC
GGGAAGCGAGACAGGCATACACGGTTGAACGCGAGGACTTGAGAAGACTATCATATCTGA
TTTTCTCAGATTTTGAGAAAAGACCATCATATCTGAATGGAGGAAGTATTTAGTTGTTTG
TATGACGTCGCCTCACTGCACTTTAAACACCTAGTCGACTCTTTTTTTTTTGGGCAGGGG
AGGGGGGTCGCTGTGGCTCGACTTACTTGCCTAATAACCATGCTTGTTATTATGCAATAT
GACTTTGTCACTTTCAATTACTTTTAGCCTACTATTTTTATTGTCTTTGATAAAGTAATC
CTCTTTATTGACATGACATTCTAATCTGATGGAGCAGGATGACCAAGAAGGTGTTAGAAC
CGTAGATGATGATAATTTCATTGATGACACTGGAGTTGATCCAGCTGATCGTTATGGCAG
CGATAATGAGCGACATTCACCTGGACGTTATGCACAGGCTGAGGAGGGTGAGGAGGACGA
TGAAATCGAACGACTCTTCAAGGGTGGTAAGAAGAAGAAGAAGAAGAATGATCGCCCTCG
TGCAGATATTGGCCTTATAGTGGAACAATTCATTGCTGAGTTTGAAGTAGCAGCCGAAGA
AGATGCAAACTTGAATAGGCAATCAAAACCAGCCATTAACAAACTTATGAAGCTTCCTCT
GCTCATAGATGTTCTCTCCAAGAAGAATCTTCAGCAGGAATTTCTTGACCACGGAGTTCT
CACTCTTCTAAAAAATTGGCTTGAGCCATTACCTGATGGAAGCATGCCAAACATGAATAT
TCGATCTGCTGTACTGAAATTATTAACTGATTTTCCAATTGACTTGGAACAGTATGACCG
AAGAGAGCAGCTTAAGAAAAGTGGTCTGGGAAAGGTCATTATGTTTTTGTCCAAATCTGA
CGAGGAGACTACTGCAAATAGGAAATTGGCTAAGGAGCTGGTTGATAAATGGAGTCGACC
AATATTCAACAAGAGCACGAGATTTGAGGACATGAAGAGATATGATGATGAAAGAGCACC
TTACAGGCGGCCACAAATGAAGAAACCTTCATCGAGTAGCTCTGGAATGGAATCCAGAGA
TGATGATCTTGATGCTGACTTTTCACAACGCAAGTCTGGGCAAAGTAGTTCAAGGCAGCA
CGCTTCTAGGCCGGAAGCCTCGCCTTTGGACTTTGTCATTCGTCCACAGTCCAAAATTGA
CCCTGAGCAGATACGGGCTCGTGCTAAGCAGGCTGTCCAAGACCAGCGTCGGCTGAAGAT
GAACAAGAAATTGCAGCAGCTGAAAGCGCCCAAGAAGAAAAACCTTCAGGCGTCGAAGCT
CAGCGTGGAAGGCCGTGGCATGATCAAGTACCTGTAGATCACCCGCTATGGCATCCGCAG
TCAGCAGTGCCCAGCACATTATACAGGACCTGCATGGGCCCAGGGATTGCTGGATTACTA
AGAAGCATCCTATCACCATTCCATGGCAAACAGCCCGGCATCAATAATTCCTTGGATCTT
TTTTCCAAATATTTTTCTTGCCTGGTAGGGTGCAGCATCTGCGCTTCAGAAACCGGTTGA
TTTGAGCACTATCTATGAGCATGTATAAATATGGTGCTTTTCAAGCAGAGTGGTGCCTTT
ATATTGTATAAAATATTTGTCATGCTTATGAGTTACAGTTAAC