Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008520_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:8:11330795:11342283:1 gene:Zm00001d008520 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable ubiquitin-conjugating enzyme E2 23
Sequence

ATGGAAAGTCTACCAAATGGTTCAGTAAACAATGCGGAGCATAACCAGGAAAACAAGAAG
TCCATGGATGCTAGTGTGCCTGAAGAAGTACAAGATGTTTTTATTTACAGAGAAGATGTT
GTGAGCTTGAAGTCCAAGGAGGATGTCCGTGGATTAGTTTTAGAGGTAGCTGGGGAATAT
GATTCTGAAGGTAGCATCACTGATGATGATATTGATACTGAGGAACATGAAGATAAAACT
GTTCGTGGAGCAGAAAATGGTGCTGCTGATGGTGATAATGCTAGTAATGGAGCTGAAGTT
GAAAGCCAGAGTTCTTTGCCGGATAACAAAGTTCGAGTGTTATGGCTTGATGATAGTGAA
AAAACAGAAGACATTGATGAGGTAGTTGTTGTTGATAGAAGTTTCCTTCATGGTGATTTA
GTTGCCTCTGCCTCAGATCCAACTGGTCAGATGGGGCTTGTTTTGGATGTCAATCTTGTG
GTTGATTTGCAAGGTGTGAATGGCGATATGATAAAGGGTGTTTCTTCCAAGGATTTGAGA
CGAATCAGGGAATTCAATGTGGGTGATTATGTTGTCTCTGGGCTATGGCTTGGTCGAGTT
GATGAAGTGCTCGATAGTGTTAATGTGCTTTTTGACGATGGCTCTGTCTGTAAAGTCAAT
AGAGCAGATCCTATGTGCTTAAAGCCAGTATTTGGCCCAATGCATCCAGATACAGATTGT
CCTTTTTATCCAGGACAGCGTGTGAAGGCAGTGTCATCATCTGTTTTCAAAACATCAAGG
TGGCTTAATGGATTGTGGAGAGCAAGTCGTCTTGAAGGTACTGTCACAAAAGTGGAAAGT
GTTTCTGTTATAGTCTATTGGATTGCATCTGCACACTTTGCTTCAGATCAGCAACCTGTT
CCTCCAGAGAAGCAGAACCCAAAGGACCTTACTCTTCTGTCTTGTTTCTCTTATGCAAAC
TGGCAATTAACTGACTGGTGTCTTCCTCACCGATACACTTTATGTACTAATGATACCGTG
ATTAATTCTGATAAGCATACAGGTCAGATCTGTACATGCCCAGAAAGCTCAGTTCCACTG
TCTGATATTCCAGAATCTCAAGCTGATGTTCAGACTGAACAAGATCAAATGACTGATACA
GATGCAGAATCAGAAACTAGTGTATCAAGCATTCTAAAGGAGCCACAGGACAATGCAACA
TCTAGGAAAAAGCTTAGGAAAGTGTCCCTAAAAAAACATAAAAGAACGAAAAAAAGAGAC
GACAGCTTTGAGCGAGCTCTACTCATTGCAAATACTTGTACCAAAGTTGATGTAATCTGG
CAGGACGGGACAAAGGAATGTGGGGTAGCCGCAACATCGTTGATTCCTATCCACAATCCA
AATGACCATGAGTTCTTCCCTGAGCAGTATGTTGTGGACAAGGTCACAAATGATGTTGAT
GATTCTTCTGAACCAAGGCGTGTGGGTCTTGTTAGAAGTGTTAGTGCTAAGGACCGAACA
GTAACTGTATCATGGTTTAAGCCTTCGCTACATCCAGAGGAGACAAAGAATATCGTGTGT
AATGAAATTGTGAGTGCATATGAACTGGATGGCCATCCGGATTATGATTATTGCTATGGA
GATATTGTCGTTCGCTTGCCGCCTGTCTCACCTGTAATTGAATCAACCAATAACAAGGAT
CAAATGGAACTAGATAGGACGGTCGATGCCTCGGAAGGATTTGCTGCCTCAAATGATGCA
CCCTCTAATACTAGTGCAAGTGAACAACTTTTGCAGAAGGAATCCTGCTCGCAGTTTACA
AGCCTCTCATGGGCTGGAAATATAGTTGGCTTTCAAGACGGTGAGATTGAAGTCATTTGG
GGTGATGGGTCGATTTCAAAGGTTGGGCCTCATGAAATATATGTTGTTGGCCGTGAAGAT
GATGATGCCTCACTAGATGACGGAACAGCCTCTGATGGTGCTAGCTGGGAGACTGTTGAT
GACAATGAAATGGATGTACTTGATGATTCTGCAAAGGATGATTCACAAAGCATACCTGAG
AATAGCATTGAAAGGGAAGATGGTTCATTCAGCTCCCAGAATGGAAGTTCTGTTGCAACT
GGTCCCCTTTCAGTTGCTTTTGGGTTTGTGACCCGACTAGCGAGTGATCTCTTCGCTCGA
GGTAGAAGGCATTTAGATAGATCGTCAAACTCGGATGCTATGGATGAAGTTGAGTCTCAC
CAGTCTAATGAAGTTTCAGAAACTAGTGATGACATTGATAAGATTAATGAGAATAATGTG
GAATCGCCAGAGGATGCTGCAGTAATAGAAAACGATTCTTCTGTCGAGAAGTCTGTAGAT
GTGGTCATGGCTGATAATCTTGTAGATTTGGAATGTTTCAAACACTTTGATATTCTGCAA
TGTCCTCCAGACCACCATTACCTTGAAAACATAGCCCAGGGCACGGGTGGAAGAAAGTGG
GTAAAAAAAGTACAGCAGGAATGGAGCATACTTGAGAAGAACCTACCAGACTATATTTAT
GTCAGAGTCTTTGAGGATCGCATGGATCTCTTGAGAGCCGTGATTGTTGGAGCAAGTGGA
ACACCCTACCAAGATGGCCTGTTCTTCTTTGATTTCTACCTTCCACCTGAGTATCCGCAA
GTTCCTCCGTCAGCATACTACCATTCTGGTGGTTTGCGTGTAAATCCAAACCTGTATGTG
GATGGAAAGGTTTGCTTAAGTCTCTTAAATACTTGGACCGGCAGAGGGAACGAAGTGTGG
GACCCATCATCATCAAGTATTCTACAAGTACTGGTTTCACTTCAGGGATTGGTTCTCAAT
GAAAAACCCTATTTTAATGAGGCTGGGTACGAGAAGCAAGTTGGTACTGTTGAAGGGGAG
AAGAATGCAGTGCCGTATAATGAGAATACGTACCTGCTGAGCGTGAAATCCATGCTGTAT
ATATTGAGACGGCCTCCTTTGCATTTTGAGGATTTTGTGAAGAGCCATTTCCGCAAGCGT
GGCCACTACATCCTTAAAGCCTGTGAGGCATATTTGCAAGGAAATGTTGTTGGCACTCTC
ACTGACGACGCATGCACCACCAACAGAAGCACGGAGCACTCGAGCTCTGTCGGCTTCAAG
CTTGCACTAGCAAAGATTTTACCAAGGTTGATTACAGCCCTGAAGGAGCATGGAGCTGAT
TGCGACCAATACGAGCACCTTGGCAAAACAGACCCCGTTAGAGAGAGCTGA

Peptide Sequence

PEP ID

Zm00001d008520_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:8:11330795:11342283:1 gene:Zm00001d008520 transcript:Zm00001d008520_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable ubiquitin-conjugating enzyme E2 23
Sequence

MESLPNGSVNNAEHNQENKKSMDASVPEEVQDVFIYREDVVSLKSKEDVRGLVLEVAGEY
DSEGSITDDDIDTEEHEDKTVRGAENGAADGDNASNGAEVESQSSLPDNKVRVLWLDDSE
KTEDIDEVVVVDRSFLHGDLVASASDPTGQMGLVLDVNLVVDLQGVNGDMIKGVSSKDLR
RIREFNVGDYVVSGLWLGRVDEVLDSVNVLFDDGSVCKVNRADPMCLKPVFGPMHPDTDC
PFYPGQRVKAVSSSVFKTSRWLNGLWRASRLEGTVTKVESVSVIVYWIASAHFASDQQPV
PPEKQNPKDLTLLSCFSYANWQLTDWCLPHRYTLCTNDTVINSDKHTGQICTCPESSVPL
SDIPESQADVQTEQDQMTDTDAESETSVSSILKEPQDNATSRKKLRKVSLKKHKRTKKRD
DSFERALLIANTCTKVDVIWQDGTKECGVAATSLIPIHNPNDHEFFPEQYVVDKVTNDVD
DSSEPRRVGLVRSVSAKDRTVTVSWFKPSLHPEETKNIVCNEIVSAYELDGHPDYDYCYG
DIVVRLPPVSPVIESTNNKDQMELDRTVDASEGFAASNDAPSNTSASEQLLQKESCSQFT
SLSWAGNIVGFQDGEIEVIWGDGSISKVGPHEIYVVGREDDDASLDDGTASDGASWETVD
DNEMDVLDDSAKDDSQSIPENSIEREDGSFSSQNGSSVATGPLSVAFGFVTRLASDLFAR
GRRHLDRSSNSDAMDEVESHQSNEVSETSDDIDKINENNVESPEDAAVIENDSSVEKSVD
VVMADNLVDLECFKHFDILQCPPDHHYLENIAQGTGGRKWVKKVQQEWSILEKNLPDYIY
VRVFEDRMDLLRAVIVGASGTPYQDGLFFFDFYLPPEYPQVPPSAYYHSGGLRVNPNLYV
DGKVCLSLLNTWTGRGNEVWDPSSSSILQVLVSLQGLVLNEKPYFNEAGYEKQVGTVEGE
KNAVPYNENTYLLSVKSMLYILRRPPLHFEDFVKSHFRKRGHYILKACEAYLQGNVVGTL
TDDACTTNRSTEHSSSVGFKLALAKILPRLITALKEHGADCDQYEHLGKTDPVRES

Transcript Sequence

Transcript ID

Zm00001d008520_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:11330795:11342283:1 gene:Zm00001d008520 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable ubiquitin-conjugating enzyme E2 23
Sequence

TAGTTGATTCCAAGCATGGAAAGTCTACCAAATGGTTCAGTAAACAATGCGGAGCATAAC
CAGGAAAACAAGAAGTCCATGGATGCTAGTGTGCCTGAAGAAGTACAAGATGTTTTTATT
TACAGAGAAGATGTTGTGAGCTTGAAGTCCAAGGAGGATGTCCGTGGATTAGTTTTAGAG
GTAGCTGGGGAATATGATTCTGAAGGTAGCATCACTGATGATGATATTGATACTGAGGAA
CATGAAGATAAAACTGTTCGTGGAGCAGAAAATGGTGCTGCTGATGGTGATAATGCTAGT
AATGGAGCTGAAGTTGAAAGCCAGAGTTCTTTGCCGGATAACAAAGTTCGAGTGTTATGG
CTTGATGATAGTGAAAAAACAGAAGACATTGATGAGGTAGTTGTTGTTGATAGAAGTTTC
CTTCATGGTGATTTAGTTGCCTCTGCCTCAGATCCAACTGGTCAGATGGGGCTTGTTTTG
GATGTCAATCTTGTGGTTGATTTGCAAGGTGTGAATGGCGATATGATAAAGGGTGTTTCT
TCCAAGGATTTGAGACGAATCAGGGAATTCAATGTGGGTGATTATGTTGTCTCTGGGCTA
TGGCTTGGTCGAGTTGATGAAGTGCTCGATAGTGTTAATGTGCTTTTTGACGATGGCTCT
GTCTGTAAAGTCAATAGAGCAGATCCTATGTGCTTAAAGCCAGTATTTGGCCCAATGCAT
CCAGATACAGATTGTCCTTTTTATCCAGGACAGCGTGTGAAGGCAGTGTCATCATCTGTT
TTCAAAACATCAAGGTGGCTTAATGGATTGTGGAGAGCAAGTCGTCTTGAAGGTACTGTC
ACAAAAGTGGAAAGTGTTTCTGTTATAGTCTATTGGATTGCATCTGCACACTTTGCTTCA
GATCAGCAACCTGTTCCTCCAGAGAAGCAGAACCCAAAGGACCTTACTCTTCTGTCTTGT
TTCTCTTATGCAAACTGGCAATTAACTGACTGGTGTCTTCCTCACCGATACACTTTATGT
ACTAATGATACCGTGATTAATTCTGATAAGCATACAGGTCAGATCTGTACATGCCCAGAA
AGCTCAGTTCCACTGTCTGATATTCCAGAATCTCAAGCTGATGTTCAGACTGAACAAGAT
CAAATGACTGATACAGATGCAGAATCAGAAACTAGTGTATCAAGCATTCTAAAGGAGCCA
CAGGACAATGCAACATCTAGGAAAAAGCTTAGGAAAGTGTCCCTAAAAAAACATAAAAGA
ACGAAAAAAAGAGACGACAGCTTTGAGCGAGCTCTACTCATTGCAAATACTTGTACCAAA
GTTGATGTAATCTGGCAGGACGGGACAAAGGAATGTGGGGTAGCCGCAACATCGTTGATT
CCTATCCACAATCCAAATGACCATGAGTTCTTCCCTGAGCAGTATGTTGTGGACAAGGTC
ACAAATGATGTTGATGATTCTTCTGAACCAAGGCGTGTGGGTCTTGTTAGAAGTGTTAGT
GCTAAGGACCGAACAGTAACTGTATCATGGTTTAAGCCTTCGCTACATCCAGAGGAGACA
AAGAATATCGTGTGTAATGAAATTGTGAGTGCATATGAACTGGATGGCCATCCGGATTAT
GATTATTGCTATGGAGATATTGTCGTTCGCTTGCCGCCTGTCTCACCTGTAATTGAATCA
ACCAATAACAAGGATCAAATGGAACTAGATAGGACGGTCGATGCCTCGGAAGGATTTGCT
GCCTCAAATGATGCACCCTCTAATACTAGTGCAAGTGAACAACTTTTGCAGAAGGAATCC
TGCTCGCAGTTTACAAGCCTCTCATGGGCTGGAAATATAGTTGGCTTTCAAGACGGTGAG
ATTGAAGTCATTTGGGGTGATGGGTCGATTTCAAAGGTTGGGCCTCATGAAATATATGTT
GTTGGCCGTGAAGATGATGATGCCTCACTAGATGACGGAACAGCCTCTGATGGTGCTAGC
TGGGAGACTGTTGATGACAATGAAATGGATGTACTTGATGATTCTGCAAAGGATGATTCA
CAAAGCATACCTGAGAATAGCATTGAAAGGGAAGATGGTTCATTCAGCTCCCAGAATGGA
AGTTCTGTTGCAACTGGTCCCCTTTCAGTTGCTTTTGGGTTTGTGACCCGACTAGCGAGT
GATCTCTTCGCTCGAGGTAGAAGGCATTTAGATAGATCGTCAAACTCGGATGCTATGGAT
GAAGTTGAGTCTCACCAGTCTAATGAAGTTTCAGAAACTAGTGATGACATTGATAAGATT
AATGAGAATAATGTGGAATCGCCAGAGGATGCTGCAGTAATAGAAAACGATTCTTCTGTC
GAGAAGTCTGTAGATGTGGTCATGGCTGATAATCTTGTAGATTTGGAATGTTTCAAACAC
TTTGATATTCTGCAATGTCCTCCAGACCACCATTACCTTGAAAACATAGCCCAGGGCACG
GGTGGAAGAAAGTGGGTAAAAAAAGTACAGCAGGAATGGAGCATACTTGAGAAGAACCTA
CCAGACTATATTTATGTCAGAGTCTTTGAGGATCGCATGGATCTCTTGAGAGCCGTGATT
GTTGGAGCAAGTGGAACACCCTACCAAGATGGCCTGTTCTTCTTTGATTTCTACCTTCCA
CCTGAGTATCCGCAAGTTCCTCCGTCAGCATACTACCATTCTGGTGGTTTGCGTGTAAAT
CCAAACCTGTATGTGGATGGAAAGGTTTGCTTAAGTCTCTTAAATACTTGGACCGGCAGA
GGGAACGAAGTGTGGGACCCATCATCATCAAGTATTCTACAAGTACTGGTTTCACTTCAG
GGATTGGTTCTCAATGAAAAACCCTATTTTAATGAGGCTGGGTACGAGAAGCAAGTTGGT
ACTGTTGAAGGGGAGAAGAATGCAGTGCCGTATAATGAGAATACGTACCTGCTGAGCGTG
AAATCCATGCTGTATATATTGAGACGGCCTCCTTTGCATTTTGAGGATTTTGTGAAGAGC
CATTTCCGCAAGCGTGGCCACTACATCCTTAAAGCCTGTGAGGCATATTTGCAAGGAAAT
GTTGTTGGCACTCTCACTGACGACGCATGCACCACCAACAGAAGCACGGAGCACTCGAGC
TCTGTCGGCTTCAAGCTTGCACTAGCAAAGATTTTACCAAGGTTGATTACAGCCCTGAAG
GAGCATGGAGCTGATTGCGACCAATACGAGCACCTTGGCAAAACAGACCCCGTTAGAGAG
AGCTGATCATTGAGTGACTTGTACTTGGATCTTTTGCCTTTTATATCTGTTCTTTTTTCG
GGTTTCAGAAAAGATGGTGACTTAATACCACCAGGCTGTTTTCGTATAAATGTACATTCA
AAGTTTGTTGTTTCCGTCAAACATTTGGAAAATATGGC