Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008439_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:8:8693683:8698722:-1 gene:Zm00001d008439 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein decapping 5
Sequence

ATGGCGGCTGAAGCGCCACCGTCGGCGTCGGCGTCGGCGTCCTCCTCCTCGGCTCCGCGG
CCGCCTACCGCGGCCGCCTCCGCCCCCGGCGGCGGCGGCGGCGGGGCGCCCGCGTCCGCG
GAGTCGTACCTCGGGAGCCTCATCAGCCTGACATCGAAGAGCGAGATCAGGTACGAGGGC
GTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATGTGCGGTCCTTT
GGAACCGAAGGTCGGAAGAAAGACGGAGTGCAGATTCCTGCTAGCGACAAAGTTTACGAG
TATATCCTCTTCCGGGGAACTGATATCAAGGATTTGCAAGTTAAGTCATCACCACCACAG
CCGCCACCACCACAAGCAGCTTCCCTGCACAATGATCCTGCCATAATACAGTCACATTAT
TCTCAACCTGCATCAACGTCATCAAGTTTGCCTTCAGCTGGGGGTGCAGTTTTACCAGAC
TTTAGCTCCCAGGCAGTTCAATATGGGCTTCAGAGGCCAACCTTTCAGAGTAACCTTCCT
CTCTACCAACCAGGGAATACTCCGTGGGGCTCTTCAGTGGCACCTCCAGCAGGAAATGCT
CCATGGGGCTCTTCAGTGGCGCCTCCAGCAGGAAATGCTTCAACACTTTCAGTTCCCTCA
ATGTACTGGCAAGGGTACTATGCACCTTCAAGTGGGCTGCCGCATCATTTGCAGCCACCT
CCTTTGCTTCATCCAACACCAGGATTGTCGGTTCCCCAGAATCTCCAATATCCAGGACTA
AATCCTTCTTTGCAATCTGGGCCGCAAAAGCTGTCAGAACTCCAACCCTCATTGATGCCA
CCTATTACTAGTCAAGGTCCTTCATCAGGTATCCTGCCTGCTACAACAGCTCCTGCTTCT
GCTACATTATTAGCTCCAGAAAGCTCAAAGCCTCTGTTGCCGAACATGGGATCGTTGTTT
GCTCCACGTGCAACATCTCTTGGTGCAACTTTTCCTTTACCAAGCCAGCCAACTGCCGTC
GCTGAAACTAGTGCAACAGTGTCACAGAACTTAACTTCATTTGGTAGCAGCAAGGTTCCT
GCTCTTCCAGGCTCAACACTGGCATACCAAACCGTATCTCAGTCTGTTTCTTCTACTATT
GCCCCATCTAGCTCAGCCCAAGCGGAGATGCCTGTGCCTTTGCTGGCACCATCAGGTCAA
CTATTGCAGAACACATCATCCATCCTTTCATCATCGCATTCCATGCAGGCACCATTACAG
CTGGCTAGCAAAGAAGTCAAGCCAATTGAGCCTAAGGCTAAGGTTGCAGAACCGTTACTA
CCTGACCCTTTGCTACCAGATCCACCATCACGGGCTATGCCTGAAATTAAGGAGCCTATA
TTACCATTGCCGAAACAGACGCCTCAGAAGTTTTCACAGTCTGTAACAGCATTCACTGAA
GAATTTGATTTCACGGCCATGAATGAGAAGTTTAACAAAGATGAAGTATGGGGCCATCTT
GGTAAGAAATCCCAGTCAAGGGACAAGGATGGTGAGGTGGGAGATGATGTGTTTGATGAA
GAACTGGAGGCTGAGGAAACTGACAACCCAGAGCTAGCTGTTAAGCCTGTTTATGTCAAG
GACGACTTCTTTGATTCCCTCTCTAGTGGAACGTTTGGACGTGGAGGGCCAAATGGAAGG
GGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGACGTTTGGCGAATTTCCGAGGCAC
AGGCAGCCCTACCGTGGTGGCGGCCGAGGCTACCGTGGCGGTGGGCGTTCCCGTGGTTCA
TATTACGGTGGCAGAGGCTATGGAAACACGGGGAGGGGTGGCCCT

Peptide Sequence

PEP ID

Zm00001d008439_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:8:8693683:8698722:-1 gene:Zm00001d008439 transcript:Zm00001d008439_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein decapping 5
Sequence

MAAEAPPSASASASSSSAPRPPTAAASAPGGGGGGAPASAESYLGSLISLTSKSEIRYEG
VLYDINTEESSIGLRNVRSFGTEGRKKDGVQIPASDKVYEYILFRGTDIKDLQVKSSPPQ
PPPPQAASLHNDPAIIQSHYSQPASTSSSLPSAGGAVLPDFSSQAVQYGLQRPTFQSNLP
LYQPGNTPWGSSVAPPAGNAPWGSSVAPPAGNASTLSVPSMYWQGYYAPSSGLPHHLQPP
PLLHPTPGLSVPQNLQYPGLNPSLQSGPQKLSELQPSLMPPITSQGPSSGILPATTAPAS
ATLLAPESSKPLLPNMGSLFAPRATSLGATFPLPSQPTAVAETSATVSQNLTSFGSSKVP
ALPGSTLAYQTVSQSVSSTIAPSSSAQAEMPVPLLAPSGQLLQNTSSILSSSHSMQAPLQ
LASKEVKPIEPKAKVAEPLLPDPLLPDPPSRAMPEIKEPILPLPKQTPQKFSQSVTAFTE
EFDFTAMNEKFNKDEVWGHLGKKSQSRDKDGEVGDDVFDEELEAEETDNPELAVKPVYVK
DDFFDSLSSGTFGRGGPNGRGRPSERRRVDTETFGEFPRHRQPYRGGGRGYRGGGRSRGS
YYGGRGYGNTGRGGP

Transcript Sequence

Transcript ID

Zm00001d008439_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:8693683:8698722:-1 gene:Zm00001d008439 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein decapping 5
Sequence

GCACCAACGGGGATCTGAGCATCCGACCGGCCGCTTGCTAGGGTTTCGTCCGTCCGCCTC
CCTGCCACAGCACCACTCCGCATCTCCAGCCCTAGCCTCGCTCAGCCCGGGATCCCGCGG
GGGCCATGGCGGCTGAAGCGCCACCGTCGGCGTCGGCGTCGGCGTCCTCCTCCTCGGCTC
CGCGGCCGCCTACCGCGGCCGCCTCCGCCCCCGGCGGCGGCGGCGGCGGGGCGCCCGCGT
CCGCGGAGTCGTACCTCGGGAGCCTCATCAGCCTGACATCGAAGAGCGAGATCAGGTACG
AGGGCGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATGTGCGGT
CCTTTGGAACCGAAGGTCGGAAGAAAGACGGAGTGCAGATTCCTGCTAGCGACAAAGTTT
ACGAGTATATCCTCTTCCGGGGAACTGATATCAAGGATTTGCAAGTTAAGTCATCACCAC
CACAGCCGCCACCACCACAAGCAGCTTCCCTGCACAATGATCCTGCCATAATACAGTCAC
ATTATTCTCAACCTGCATCAACGTCATCAAGTTTGCCTTCAGCTGGGGGTGCAGTTTTAC
CAGACTTTAGCTCCCAGGCAGTTCAATATGGGCTTCAGAGGCCAACCTTTCAGAGTAACC
TTCCTCTCTACCAACCAGGGAATACTCCGTGGGGCTCTTCAGTGGCACCTCCAGCAGGAA
ATGCTCCATGGGGCTCTTCAGTGGCGCCTCCAGCAGGAAATGCTTCAACACTTTCAGTTC
CCTCAATGTACTGGCAAGGGTACTATGCACCTTCAAGTGGGCTGCCGCATCATTTGCAGC
CACCTCCTTTGCTTCATCCAACACCAGGATTGTCGGTTCCCCAGAATCTCCAATATCCAG
GACTAAATCCTTCTTTGCAATCTGGGCCGCAAAAGCTGTCAGAACTCCAACCCTCATTGA
TGCCACCTATTACTAGTCAAGGTCCTTCATCAGGTATCCTGCCTGCTACAACAGCTCCTG
CTTCTGCTACATTATTAGCTCCAGAAAGCTCAAAGCCTCTGTTGCCGAACATGGGATCGT
TGTTTGCTCCACGTGCAACATCTCTTGGTGCAACTTTTCCTTTACCAAGCCAGCCAACTG
CCGTCGCTGAAACTAGTGCAACAGTGTCACAGAACTTAACTTCATTTGGTAGCAGCAAGG
TTCCTGCTCTTCCAGGCTCAACACTGGCATACCAAACCGTATCTCAGTCTGTTTCTTCTA
CTATTGCCCCATCTAGCTCAGCCCAAGCGGAGATGCCTGTGCCTTTGCTGGCACCATCAG
GTCAACTATTGCAGAACACATCATCCATCCTTTCATCATCGCATTCCATGCAGGCACCAT
TACAGCTGGCTAGCAAAGAAGTCAAGCCAATTGAGCCTAAGGCTAAGGTTGCAGAACCGT
TACTACCTGACCCTTTGCTACCAGATCCACCATCACGGGCTATGCCTGAAATTAAGGAGC
CTATATTACCATTGCCGAAACAGACGCCTCAGAAGTTTTCACAGTCTGTAACAGCATTCA
CTGAAGAATTTGATTTCACGGCCATGAATGAGAAGTTTAACAAAGATGAAGTATGGGGCC
ATCTTGGTAAGAAATCCCAGTCAAGGGACAAGGATGGTGAGGTGGGAGATGATGTGTTTG
ATGAAGAACTGGAGGCTGAGGAAACTGACAACCCAGAGCTAGCTGTTAAGCCTGTTTATG
TCAAGGACGACTTCTTTGATTCCCTCTCTAGTGGAACGTTTGGACGTGGAGGGCCAAATG
GAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGACGTTTGGCGAATTTCCGA
GGCACAGGCAGCCCTACCGTGGTGGCGGCCGAGGCTACCGTGGCGGTGGGCGTTCCCGTG
GTTCATATTACGGTGGCAGAGGCTATGGAAACACGGGGAGGGGTGGCCCTG