Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d008429_T042
CDS Infomation	cds chromosome:B73_RefGen_v4:8:8458991:8475307:-1 gene:Zm00001d008429 gene_biotype:protein_coding transcript_biotype:protein_coding description:Paired amphipathic helix protein Sin3-like 3
Sequence	ATGAAGCGCGGCGCCAGAGACGACGCACTCATGGGGTCACAGCTCAAGCGCCCGAACGTT GGCCGATCCGATCCGTCGGCTCAGCCACAACACATGCCTGTGCCCGGTTTAGCGTCTGCA GCCGCACCGCCGCCTCAAGCTGGTGCTGCTCCGCCGGCGCAGCCGCAACAGACATCCGGC GCGGCCTTGACCAACCAGAAGCTGACGACAAATGATGCGCTCGTCTACCTTAAGGCAGTT AAGGATAAGTTCCAGGACAAGCGGGAGAAGTACGAGGAGTTCCTCGAGGTCATGCGCGAC TTCAAGAGCGAGAGGATCGACACCAATGGAGTGATTGGCCGTGTCAAAACGCTGTTCAAC GGGTACCCTGAACTAATCCTTGGGTTCAACGCCTTCTTGCCGAAGGGCTATGCGATCAAG CTACAAGAAGAGAAGAAGCCTGTTGATTTTGTGGAAGCTATCAATTTCGTGAACAAGATA AAGAATCGATTTCAGCATGATGAACGAGTTTACAAGGCATTCTTGGACATCCTCAACATG TACCGCAAGGATAATAAGTCTATCCAAGATGTTTACCATGAGGTTGCTGGGCTGTTCAAG GACCATAAAGATTTGCTTGAAGAATTCCAGCACTTCCTGCCTGATACCTCAGTGGCCCCA CAAGCAGTGGCATCTTCAAGGGGTGGTTTGGTTAAGCGGGAGGACAGGAGCTCTTTGCCA CCTGCAAATAGGACCCTTCACAATGAGAAGAGGGAGAGAGCTTGTCTATCACATGCTGAC CGTGACTTTAGTGTTGACCGTCCTGATGTGGATCATGATCGCCAGAGAAGACGTCTTGAT AAAGAAAAAGAACGGAAGGTGGAAAGGGATAGAAGGGATTATGAGAGAGAAGACAAGGAT GGTGAACATGACAGTAGAGACCTGGAGATAGGACAGCGTAAGCGAAAGCCTTTTCCAAGG AAGATGGAGGATAATGCAGGTGCGGAGACACACCAAGGAGGCCCCAGTGAGAATCATGGA ATCCATAGCGTTTCTTCTTCATCATATGACGATAAGGATGCGCTGAAGAGTGTATACACG CACGAGTTCCATTTCTGTGAGAAGGTGAAGGAAAAACTGGAGCATGAAGCTTACCAGGAG TTTTTGAAATGTCTACACATCTACAGCCAAGAGATTATCACGAGAAGTGAACTGAAGAAC TTGGTGAATGATATACTCCAGCATTATCCAGATCTTATGGAAGGGTTTAATGAATTCTTG GAACATTGTGAAAATATAGATGGATTTCTTGCTGGTGTCTTCAACAAACGCCCAACAACA AGGATTGTTAAAACTGAGGATAAAGAAAAGGATAGAGATCGGGACAGGGAGGACAGGGAT AGAGATCGGGAAAAGGAAAGAGAGAAGGAACGAGAAAGACTCGATAAAGGGTCAACATTC AATTCAAAGGACGGTTCTTGTCACAAACCTCCTATGTTTTCTGGCAAAGAGAAGTACAAC CTATCCAAACCAATATCAGAGCTTGATCTCTCAAACTGTCAACGTTGCACTCCGAGTTAC CGGCTTCTACCTAAAAATTATCCCATGCCCCCTGCCAGCAACAGGACTGATCTTGGAGCC TCTGTTCTTAATGATCACTGGGTATCAGTGACATCCGGAAGTGAAGATTATTCATTTAAG CACATGCGGAAGAATCAGTATGAGGAAAGCTTATTTAGATGCGAGGATGACAGGTTTGAG TTGGATATGCTGTTGGAATCAGTTAATGCAGCGACTAAGCGTGTTGAAGAGCTGATAGAA AAGATGCAAGACAACTCAGTCAAACCTGAGAGTCCAATACGCATGGATGAGCATTTAACT CCGTTGAACCTGAGGTGCATTGAACGACTGTACGGTGATCATGGTCTTGATGTGATGGAT GTTCTTCGCAAAAATGCTAGTGTTGCTTTGCCAGTTATTCTAACTAGGCTCAAACAGAAG CAGGAGGAGTGGTCAAGGTGCCGATCAGATTTCAACAAAGTTTGGGCTGAAATATATGCC AAGAATTATCACAAGTCACTTGACCATCGTAGTTTCTATTTCAAGCAGCAAGATACGAAG AACCTGAGCACAAAGTGTATGTAA

Peptide Sequence

PEP ID	Zm00001d008429_P042
PEP Infomation	pep chromosome:B73_RefGen_v4:8:8458991:8475307:-1 gene:Zm00001d008429 transcript:Zm00001d008429_T042 gene_biotype:protein_coding transcript_biotype:protein_coding description:Paired amphipathic helix protein Sin3-like 3
Sequence	MKRGARDDALMGSQLKRPNVGRSDPSAQPQHMPVPGLASAAAPPPQAGAAPPAQPQQTSG AALTNQKLTTNDALVYLKAVKDKFQDKREKYEEFLEVMRDFKSERIDTNGVIGRVKTLFN GYPELILGFNAFLPKGYAIKLQEEKKPVDFVEAINFVNKIKNRFQHDERVYKAFLDILNM YRKDNKSIQDVYHEVAGLFKDHKDLLEEFQHFLPDTSVAPQAVASSRGGLVKREDRSSLP PANRTLHNEKRERACLSHADRDFSVDRPDVDHDRQRRRLDKEKERKVERDRRDYEREDKD GEHDSRDLEIGQRKRKPFPRKMEDNAGAETHQGGPSENHGIHSVSSSSYDDKDALKSVYT HEFHFCEKVKEKLEHEAYQEFLKCLHIYSQEIITRSELKNLVNDILQHYPDLMEGFNEFL EHCENIDGFLAGVFNKRPTTRIVKTEDKEKDRDRDREDRDRDREKEREKERERLDKGSTF NSKDGSCHKPPMFSGKEKYNLSKPISELDLSNCQRCTPSYRLLPKNYPMPPASNRTDLGA SVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNAATKRVEELIE KMQDNSVKPESPIRMDEHLTPLNLRCIERLYGDHGLDVMDVLRKNASVALPVILTRLKQK QEEWSRCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKNLSTKCM

Transcript Sequence

Transcript ID	Zm00001d008429_T042
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:8458991:8475307:-1 gene:Zm00001d008429 gene_biotype:protein_coding transcript_biotype:protein_coding description:Paired amphipathic helix protein Sin3-like 3
Sequence	CCGAGCCGTTTCTCTTCTATTTCGTCTTCCGCCTCGGTCCCTTCTCTCCTGTCGTTCCCC CCTCCCCTGGCGATTAGCTCCCGCCCGCCTCCCGCCCCGCTCCCCACCGCGCTCGCTGCG CTGCCTGTCCTGGCGCTGCGTCCTGCGGCGCCGCGAGAGTTGGAGGGTGCTCGTGGCGGG CAGATCCGGCGTCGGCGTCGGCGTCGGCAGACAGGCTCGGAGGTGAGATCGGCGTCGGTG GCGGCGGCGGAGCGCGCGAGGTGGTCGAGGGAGGAATCGGTGGCGCGCGGAGGCGAGGAC GAGGCTGAGGAGGACGTCGAGCTCGGCTGGTGCTGCATGGGGGTATGAAGCGCGGCGCCA GAGACGACGCACTCATGGGGTCACAGCTCAAGCGCCCGAACGTTGGCCGATCCGATCCGT CGGCTCAGCCACAACACATGCCTGTGCCCGGTTTAGCGTCTGCAGCCGCACCGCCGCCTC AAGCTGGTGCTGCTCCGCCGGCGCAGCCGCAACAGACATCCGGCGCGGCCTTGACCAACC AGAAGCTGACGACAAATGATGCGCTCGTCTACCTTAAGGCAGTTAAGGATAAGTTCCAGG ACAAGCGGGAGAAGTACGAGGAGTTCCTCGAGGTCATGCGCGACTTCAAGAGCGAGAGGA TCGACACCAATGGAGTGATTGGCCGTGTCAAAACGCTGTTCAACGGGTACCCTGAACTAA TCCTTGGGTTCAACGCCTTCTTGCCGAAGGGCTATGCGATCAAGCTACAAGAAGAGAAGA AGCCTGTTGATTTTGTGGAAGCTATCAATTTCGTGAACAAGATAAAGAATCGATTTCAGC ATGATGAACGAGTTTACAAGGCATTCTTGGACATCCTCAACATGTACCGCAAGGATAATA AGTCTATCCAAGATGTTTACCATGAGGTTGCTGGGCTGTTCAAGGACCATAAAGATTTGC TTGAAGAATTCCAGCACTTCCTGCCTGATACCTCAGTGGCCCCACAAGCAGTGGCATCTT CAAGGGGTGGTTTGGTTAAGCGGGAGGACAGGAGCTCTTTGCCACCTGCAAATAGGACCC TTCACAATGAGAAGAGGGAGAGAGCTTGTCTATCACATGCTGACCGTGACTTTAGTGTTG ACCGTCCTGATGTGGATCATGATCGCCAGAGAAGACGTCTTGATAAAGAAAAAGAACGGA AGGTGGAAAGGGATAGAAGGGATTATGAGAGAGAAGACAAGGATGGTGAACATGACAGTA GAGACCTGGAGATAGGACAGCGTAAGCGAAAGCCTTTTCCAAGGAAGATGGAGGATAATG CAGGTGCGGAGACACACCAAGGAGGCCCCAGTGAGAATCATGGAATCCATAGCGTTTCTT CTTCATCATATGACGATAAGGATGCGCTGAAGAGTGTATACACGCACGAGTTCCATTTCT GTGAGAAGGTGAAGGAAAAACTGGAGCATGAAGCTTACCAGGAGTTTTTGAAATGTCTAC ACATCTACAGCCAAGAGATTATCACGAGAAGTGAACTGAAGAACTTGGTGAATGATATAC TCCAGCATTATCCAGATCTTATGGAAGGGTTTAATGAATTCTTGGAACATTGTGAAAATA TAGATGGATTTCTTGCTGGTGTCTTCAACAAACGCCCAACAACAAGGATTGTTAAAACTG AGGATAAAGAAAAGGATAGAGATCGGGACAGGGAGGACAGGGATAGAGATCGGGAAAAGG AAAGAGAGAAGGAACGAGAAAGACTCGATAAAGGGTCAACATTCAATTCAAAGGACGGTT CTTGTCACAAACCTCCTATGTTTTCTGGCAAAGAGAAGTACAACCTATCCAAACCAATAT CAGAGCTTGATCTCTCAAACTGTCAACGTTGCACTCCGAGTTACCGGCTTCTACCTAAAA ATTATCCCATGCCCCCTGCCAGCAACAGGACTGATCTTGGAGCCTCTGTTCTTAATGATC ACTGGGTATCAGTGACATCCGGAAGTGAAGATTATTCATTTAAGCACATGCGGAAGAATC AGTATGAGGAAAGCTTATTTAGATGCGAGGATGACAGGTTTGAGTTGGATATGCTGTTGG AATCAGTTAATGCAGCGACTAAGCGTGTTGAAGAGCTGATAGAAAAGATGCAAGACAACT CAGTCAAACCTGAGAGTCCAATACGCATGGATGAGCATTTAACTCCGTTGAACCTGAGGT GCATTGAACGACTGTACGGTGATCATGGTCTTGATGTGATGGATGTTCTTCGCAAAAATG CTAGTGTTGCTTTGCCAGTTATTCTAACTAGGCTCAAACAGAAGCAGGAGGAGTGGTCAA GGTGCCGATCAGATTTCAACAAAGTTTGGGCTGAAATATATGCCAAGAATTATCACAAGT CACTTGACCATCGTAGTTTCTATTTCAAGCAGCAAGATACGAAGAACCTGAGCACAAAGT GTATGTAAAAATTTAATTACACATGAATGTTTCTTCTGGTTGTAGTTGCACCGTTGCCTG GTTGCT