Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008354_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:8:6151711:6163477:1 gene:Zm00001d008354 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc knuckle (CCHC-type) family protein
Sequence

ATGGCGAGAGAACCGAGTCCTGAAATAGATGATGAACTTTACAATGAAGTTTATGGGAAA
GCATACAGCGGCCCAGTTGCATCAGCTACAAATAGTGTGACTCCTAAAGGAAATGCTGAG
AAGAGGCCCCTGACTCGTGATAAGTCAGATGATGAAGATGAGGCCCCAGATCCTAATGCT
GTTCCCACGGACTTCACTAGCCGAGAGGCTAAGGTCTGGGAGGCTAAAGCTAAGGCTACA
GAAAGGAACTGGAAGAAGAGGAAGGAGGAAGAAATGATTTGTAAAATATGTGGAGACCCA
GGCCATTTTACTCAGGGTTGCCCCTCCACACTTGGGGCAAATAAGAGAAATGCAGACTTT
TTTGAAAGAGTTCCAGCAAGAGATAAGCAAGTCAGAGATCTTTTCAATGAGAGGGTAATA
AGCCAGATTGAGAAAGATGTGGGGTGTAAAATCAGAATGGATGAGAAGTTCCTGTTTGTC
AGTGGAAAGGATAGATTAATATTATCCAAAGGTGTTTCTGCTGTGCATAAAATTATTCAA
GAGGGTAAGGGTAAACATAGTCCAAGCAGTCCGAAACACGATCGCTCTAGGTCGCCTGTA
CGAAACACTACTGAGTTTCGTTCCAAACACTCTGATTCTCATCGCTCACCTAGCCCAAGA
AATTTTGATTCTCAATGGTCCCATAGTCCAAGAAATGCATCACTCTCTCAAAGTAAAGGA
TACTATAATGAAAGACATCGAGATGGTCGCTTACACAACAATATGCCCAAGTTTTCGAAA
GGATCTCCACAAGCTCATGCCAACTTTGGAGCAAAAGGCCGTCCAGCCCAATCAAAATCT
CCACGCCATACCTCTTATCTTGATGAATTACCTAGAACACATGGCGAGAATAACCAATTT
GCTGCATCACGAGTGCCCAATGATTGGGGAATTGAGAGGCATGGAGCAGATGCCAGTTCA
AGTCTTAGGTTTGACATGCCATCCCACCAACAGACCTTGGAAGAACTTGAGATGGAGTTT
AAAAAAGAAGCTACACAATTAGCTAGAGCTCGTGACCAAGAGGAGGATGAAGAGAACTAT
AGGCATCGAGAGTCGCTGAGAGTGATTAGAGAAAATTACATGGAGAGAGTGATTACCTTG
AGGAATGTGCATGCAAAGAAGTGGGAAGAATTTCTTGACACCTTTAAAAGTCAACAACAA
GCACAGCCTTCATACATACAAACCGGATATCTAGGTTTTGAGCAGAGAACGGCACATATT
TCAGCTACACATCAACCAATGGATTCGAAGAGCACATATCCGTATGCTTCTGATAGCTAT
TCAGCCCCAAAGGCTCATGCAGCATATGGTGAGTTTCAACATGAGAGGCATGATGATCTT
GGGAGGGCCTATAGGCGATATTAG

Peptide Sequence

PEP ID

Zm00001d008354_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:8:6151711:6163477:1 gene:Zm00001d008354 transcript:Zm00001d008354_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc knuckle (CCHC-type) family protein
Sequence

MAREPSPEIDDELYNEVYGKAYSGPVASATNSVTPKGNAEKRPLTRDKSDDEDEAPDPNA
VPTDFTSREAKVWEAKAKATERNWKKRKEEEMICKICGDPGHFTQGCPSTLGANKRNADF
FERVPARDKQVRDLFNERVISQIEKDVGCKIRMDEKFLFVSGKDRLILSKGVSAVHKIIQ
EGKGKHSPSSPKHDRSRSPVRNTTEFRSKHSDSHRSPSPRNFDSQWSHSPRNASLSQSKG
YYNERHRDGRLHNNMPKFSKGSPQAHANFGAKGRPAQSKSPRHTSYLDELPRTHGENNQF
AASRVPNDWGIERHGADASSSLRFDMPSHQQTLEELEMEFKKEATQLARARDQEEDEENY
RHRESLRVIRENYMERVITLRNVHAKKWEEFLDTFKSQQQAQPSYIQTGYLGFEQRTAHI
SATHQPMDSKSTYPYASDSYSAPKAHAAYGEFQHERHDDLGRAYRRY

Transcript Sequence

Transcript ID

Zm00001d008354_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:6151711:6163477:1 gene:Zm00001d008354 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc knuckle (CCHC-type) family protein
Sequence

CTCCTCCTCCTCCTCCGTCTCTCCCTTCTCCACTCTCCCCCCTCTCCGTCTCTCTGTCCT
TTCTGGGTCGACGGCTGGGCGCCGCCGCCCTTCGTCAGGTCTTCGCCGGCGGCGATTACA
CACCAGGTTGAGCAAATATTCTTCCACCAATGGCGAGAGAACCGAGTCCTGAAATAGATG
ATGAACTTTACAATGAAGTTTATGGGAAAGCATACAGCGGCCCAGTTGCATCAGCTACAA
ATAGTGTGACTCCTAAAGGAAATGCTGAGAAGAGGCCCCTGACTCGTGATAAGTCAGATG
ATGAAGATGAGGCCCCAGATCCTAATGCTGTTCCCACGGACTTCACTAGCCGAGAGGCTA
AGGTCTGGGAGGCTAAAGCTAAGGCTACAGAAAGGAACTGGAAGAAGAGGAAGGAGGAAG
AAATGATTTGTAAAATATGTGGAGACCCAGGCCATTTTACTCAGGGTTGCCCCTCCACAC
TTGGGGCAAATAAGAGAAATGCAGACTTTTTTGAAAGAGTTCCAGCAAGAGATAAGCAAG
TCAGAGATCTTTTCAATGAGAGGGTAATAAGCCAGATTGAGAAAGATGTGGGGTGTAAAA
TCAGAATGGATGAGAAGTTCCTGTTTGTCAGTGGAAAGGATAGATTAATATTATCCAAAG
GTGTTTCTGCTGTGCATAAAATTATTCAAGAGGGTAAGGGTAAACATAGTCCAAGCAGTC
CGAAACACGATCGCTCTAGGTCGCCTGTACGAAACACTACTGAGTTTCGTTCCAAACACT
CTGATTCTCATCGCTCACCTAGCCCAAGAAATTTTGATTCTCAATGGTCCCATAGTCCAA
GAAATGCATCACTCTCTCAAAGTAAAGGATACTATAATGAAAGACATCGAGATGGTCGCT
TACACAACAATATGCCCAAGTTTTCGAAAGGATCTCCACAAGCTCATGCCAACTTTGGAG
CAAAAGGCCGTCCAGCCCAATCAAAATCTCCACGCCATACCTCTTATCTTGATGAATTAC
CTAGAACACATGGCGAGAATAACCAATTTGCTGCATCACGAGTGCCCAATGATTGGGGAA
TTGAGAGGCATGGAGCAGATGCCAGTTCAAGTCTTAGGTTTGACATGCCATCCCACCAAC
AGACCTTGGAAGAACTTGAGATGGAGTTTAAAAAAGAAGCTACACAATTAGCTAGAGCTC
GTGACCAAGAGGAGGATGAAGAGAACTATAGGCATCGAGAGTCGCTGAGAGTGATTAGAG
AAAATTACATGGAGAGAGTGATTACCTTGAGGAATGTGCATGCAAAGAAGTGGGAAGAAT
TTCTTGACACCTTTAAAAGTCAACAACAAGCACAGCCTTCATACATACAAACCGGATATC
TAGGTTTTGAGCAGAGAACGGCACATATTTCAGCTACACATCAACCAATGGATTCGAAGA
GCACATATCCGTATGCTTCTGATAGCTATTCAGCCCCAAAGGCTCATGCAGCATATGGTG
AGTTTCAACATGAGAGGCATGATGATCTTGGGAGGGCCTATAGGCGATATTAGCTGTGAA
TAGTGGGCGATTTTGTGAGGAATCAGTGTCAATGGTGCGCTTAGACCTACTTATCACCCA
TTGCTGTTATGTAGCTTGAGGAGGTAAGCATTCATATATAGGCAGAACTGTCTCCCAATT
ACTTTCTTTGCAGCGTCTACAACCGCAACGGACTGTGGAGCTGTTTCAGGCATCGTAACA
AGCTGCTTTCCAACGAACTAAACTGAAATGCTATAAAAAAACATTGACCTGTATGACTGT
TTTATCTGCTTGGAAAAAATCTCCCTGAGTTGGCGTTTATGTGAACCTAGTATTTTTTTT
GTCAAACCTGGTATATCGCTATGCTGGGTCTATCCGAATGGTTGTTTGCATCATCCCATT
GTTTTGGAAGGTTTGGCACACGATATGAAAGTTAGAACATGTGGAACAGTCAGCTATTTC
GTGAAATTTGGTCAGAACTTGATGGCACTCGTTGCTGTAGTGGTGACTAGGCCAGTGCCT
TCGGATTGGTACTGTTTTGTGTCAATCTCAACAGGCACTGCACTGTCCCATATACATTGG
AATGTTTGATTGGTGGATGGAGGTTGTATTGTAAATCCTGGCTGAGTGAAAATCGAATTT
T