Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008249_T020
CDS Infomation

cds chromosome:B73_RefGen_v4:8:2669324:2674772:1 gene:Zm00001d008249 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:argonaute4a description: argonaute4a
Sequence

ATGGAGTCTCACAATGGCGAGGCTGATGATTTGCCTCCACCACCCCCTTTGGCTGCTGGT
GTTGAACCACTTAAAGCCGATGAAACAAAGATGCCATTGAAACCTAGGAGTCTGGTCCAG
AGGAATGGCTTTGGCAGAAAGGGGCAGCAGATAAAGCTGATAACAAACCACTTCAAAGTT
TCTCTCATGAAGGCTGAAGATTTTTTCTATCATTACTATGTCAATTTGAAGTATGAAGAT
GATACACCGGTTGATCGGAAAGGGTCGGGAAGAAAAGTGATCGAAAAACTGCAGCAAACT
TATGCTGCTGAACTTGCAAATAAAGATTTTGCATATGATGGTGAGAAGAGCCTGTTTACA
ATTGGTGCCCTTCCTCAAGTTAAAATGGAATTCACTGTTGTGGATGAAGACGTTTCAACT
GGAAAGACTCCTGCAAATGGCAGTCCAGGCAATGATAGTCCTCCTGGAAGTGACAGGAAA
AGGGTCCGAAGGCCTTACAATACAAAGACATATAAGGTTGAACTATCTTTTGCGGCAAAA
ATCCCTATGAGTGCAATCTCACAGGCTTTGAGGGGTCAGGAGTCAGAGCACACTCAGGAA
GCAATTCGAGTGATTGACATTATTCTGAGGCAGCACTCAGCTAAGCAGGGTTGCCTATTA
GTAAGGCAATCGTTCTTCCACAATAATCCTTCCAATTTTGTTGACCTGGGTGGTGGTGTA
GTGGGATGTAGAGGGTTCCATTCTAGTTTTCGTGCAACCCAGAGTGGACTTTCACTCAAT
ATCGATGTGTCCACCACAATGATAGTGAAACCTGGTCCTGTCATTGACTTTCTGATTGCC
AATCAGAAAGTTAATGATCCAAGCATGATTGATTGGGCAAAGGCCAAGCGCTCACTGAAG
AACTTAAGGATAAAAACAAGTCCGGCGAACCAAGAACAGAAGATTGTTGGTCTCAGCGAC
AGGCCTTGCCGTGAGCAATTATTCACACTGAAACATAAAAATGGTGAATCTGAAGAGATC
ACTGTTTTTGATTACTTTGTAAAGAACCGTGGCATAAAGCTGGAATATTCTGGTGATCTT
CCTTGTATCAATGTGGGAAAACCAAAGCGTCCAACTTATTTTCCAGTTGAGTTATGCAGT
CTTCTTCCTTTGCAACGGTACACTAAAGCATTGAGCACACTTCAAAGATCATCACTCGTT
GAGAAATCTAGGCAGAAACCACAAGAAAGGATGTCTGTTTTGTCTGATGTGCTGCAAAGA
AGCAACTATGATGCAGAACCCATGCTGAAGGCTTGTGGGATTACAATTGCTAGAAATTTC
ATAGAAGTTGATGGTAGGGTACTGCAGCCCCCTAAGCTTAAAGCTGGGAACGGAGAAGAC
ATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAGAAGCTCATTAGAGCTAGCAGT
GTCGAGAAATGGGCAGTAGTAAACTTTTCTGCACGATGCAATGTCCGGGATCTTGTCCGT
GATCTCATCAAGTGTGGAGGCATGAAGGGCATTATGGTTGATGCACCATTTGCTGTATTT
GATGAGAATCCTTCAATGAGACGGTCACCTGCTGTAAGAAGGGTTGAAGACATGTTTGAA
CAAGTGAAAACTAAGCTTCCTGGAGCACCCAAGTTTCTTTTGTGTGTTCTAGCGGAAAGA
AAGAATTCCGATATTTATGGGCCTTGGAAGAAGAAATGCCTTGCTGAATTTGGGATCGTT
ACACAGTGTGTGGCACCAACTAGAGTCAATGATCAGTATCTTACAAATGTCTTGTTAAAG
ATTAACGCAAAGTTGGGTGGCTTGAATTCGTTGCTCCAAATTGAAACATCCCCAGCAATT
CCTCTCGTATCCAAGGTCCCAACTATAATCTTGGGTATGGACGTATCACACGGATCTCCT
GGACATTCTGATATACCGTCTGTTGCTGCTGTTGTTAGTTCTCGTGAATGGCCTCTTATC
TCAAAATACAGAGCATCTGTCCGCACCCAATCACCAAAAATGGAAATGATTGACTCGTTG
TTTAAGCCACGGGAAACTGATGACGATGGTCTGATTCGGGAGTGTCTGATTGACTTCTAC
ACCAGTTCAGGGAAGAGAAAGCCCGACCAAGTCATCATCTTCAGGTCTGTTATTATTTTA
AATTTTCTGTTTGCAAATCTGAGTAATTTTTTGTATGGAAGGGACGGTGTTAGTGAAAGT
CAGTTTAATCAGGTGCTGAACATTGAGTTGCAACAAATCATTGAGGCTTGCAAATTTCTT
GATGAGAAATGGAATCCCAAGTTCACATTGATCATTGCCCAGAAGAATCACCACACTAAA
TTTTTCATTCCTGGAAAGCCAGATAATGTTCCAGCTGGCACTGTTGTTGACAACAAAGGA
ACTACCAGGCCAACTCACTATCACATCCTGCATGACGAGATAGGCTTCAATCCTGATGAC
CTGCAGGAGCTGGTGCACTCGCTCTCTTATGTGTACCAAAGGAGCACAACAGCCATATCA
GTTGTTGCTCCCATCTGCTACGCCCACCTTGCAGCCGCCCAGGTTGGGCAGTTCATAAAG
TTCGACGAGATGTCGGAGACTTCATCTAGCCATGGGGGGCATACCTCGGCGGGCAGCGTC
CCTGTACAGGAGCTGCCCCGTCTGCATGAGAAAGTGAGGAGCTCCATGTTCTTCTGCTGA

Peptide Sequence

PEP ID

Zm00001d008249_P020
PEP Infomation

pep chromosome:B73_RefGen_v4:8:2669324:2674772:1 gene:Zm00001d008249 transcript:Zm00001d008249_T020 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:argonaute4a description: argonaute4a
Sequence

MESHNGEADDLPPPPPLAAGVEPLKADETKMPLKPRSLVQRNGFGRKGQQIKLITNHFKV
SLMKAEDFFYHYYVNLKYEDDTPVDRKGSGRKVIEKLQQTYAAELANKDFAYDGEKSLFT
IGALPQVKMEFTVVDEDVSTGKTPANGSPGNDSPPGSDRKRVRRPYNTKTYKVELSFAAK
IPMSAISQALRGQESEHTQEAIRVIDIILRQHSAKQGCLLVRQSFFHNNPSNFVDLGGGV
VGCRGFHSSFRATQSGLSLNIDVSTTMIVKPGPVIDFLIANQKVNDPSMIDWAKAKRSLK
NLRIKTSPANQEQKIVGLSDRPCREQLFTLKHKNGESEEITVFDYFVKNRGIKLEYSGDL
PCINVGKPKRPTYFPVELCSLLPLQRYTKALSTLQRSSLVEKSRQKPQERMSVLSDVLQR
SNYDAEPMLKACGITIARNFIEVDGRVLQPPKLKAGNGEDIFTRNGRWNFNNKKLIRASS
VEKWAVVNFSARCNVRDLVRDLIKCGGMKGIMVDAPFAVFDENPSMRRSPAVRRVEDMFE
QVKTKLPGAPKFLLCVLAERKNSDIYGPWKKKCLAEFGIVTQCVAPTRVNDQYLTNVLLK
INAKLGGLNSLLQIETSPAIPLVSKVPTIILGMDVSHGSPGHSDIPSVAAVVSSREWPLI
SKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSSGKRKPDQVIIFRSVIIL
NFLFANLSNFLYGRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTK
FFIPGKPDNVPAGTVVDNKGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAIS
VVAPICYAHLAAAQVGQFIKFDEMSETSSSHGGHTSAGSVPVQELPRLHEKVRSSMFFC

Transcript Sequence

Transcript ID

Zm00001d008249_T020
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:2669324:2674772:1 gene:Zm00001d008249 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:argonaute4a description: argonaute4a
Sequence

GCTTTGGATACTCATGCAGCAAGGCTCACTAAATGGAGTCTCACAATGGCGAGGCTGATG
ATTTGCCTCCACCACCCCCTTTGGCTGCTGGTGTTGAACCACTTAAAGCCGATGAAACAA
AGATGCCATTGAAACCTAGGAGTCTGGTCCAGAGGAATGGCTTTGGCAGAAAGGGGCAGC
AGATAAAGCTGATAACAAACCACTTCAAAGTTTCTCTCATGAAGGCTGAAGATTTTTTCT
ATCATTACTATGTCAATTTGAAGTATGAAGATGATACACCGGTTGATCGGAAAGGGTCGG
GAAGAAAAGTGATCGAAAAACTGCAGCAAACTTATGCTGCTGAACTTGCAAATAAAGATT
TTGCATATGATGGTGAGAAGAGCCTGTTTACAATTGGTGCCCTTCCTCAAGTTAAAATGG
AATTCACTGTTGTGGATGAAGACGTTTCAACTGGAAAGACTCCTGCAAATGGCAGTCCAG
GCAATGATAGTCCTCCTGGAAGTGACAGGAAAAGGGTCCGAAGGCCTTACAATACAAAGA
CATATAAGGTTGAACTATCTTTTGCGGCAAAAATCCCTATGAGTGCAATCTCACAGGCTT
TGAGGGGTCAGGAGTCAGAGCACACTCAGGAAGCAATTCGAGTGATTGACATTATTCTGA
GGCAGCACTCAGCTAAGCAGGGTTGCCTATTAGTAAGGCAATCGTTCTTCCACAATAATC
CTTCCAATTTTGTTGACCTGGGTGGTGGTGTAGTGGGATGTAGAGGGTTCCATTCTAGTT
TTCGTGCAACCCAGAGTGGACTTTCACTCAATATCGATGTGTCCACCACAATGATAGTGA
AACCTGGTCCTGTCATTGACTTTCTGATTGCCAATCAGAAAGTTAATGATCCAAGCATGA
TTGATTGGGCAAAGGCCAAGCGCTCACTGAAGAACTTAAGGATAAAAACAAGTCCGGCGA
ACCAAGAACAGAAGATTGTTGGTCTCAGCGACAGGCCTTGCCGTGAGCAATTATTCACAC
TGAAACATAAAAATGGTGAATCTGAAGAGATCACTGTTTTTGATTACTTTGTAAAGAACC
GTGGCATAAAGCTGGAATATTCTGGTGATCTTCCTTGTATCAATGTGGGAAAACCAAAGC
GTCCAACTTATTTTCCAGTTGAGTTATGCAGTCTTCTTCCTTTGCAACGGTACACTAAAG
CATTGAGCACACTTCAAAGATCATCACTCGTTGAGAAATCTAGGCAGAAACCACAAGAAA
GGATGTCTGTTTTGTCTGATGTGCTGCAAAGAAGCAACTATGATGCAGAACCCATGCTGA
AGGCTTGTGGGATTACAATTGCTAGAAATTTCATAGAAGTTGATGGTAGGGTACTGCAGC
CCCCTAAGCTTAAAGCTGGGAACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATT
TCAATAATAAGAAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTT
CTGCACGATGCAATGTCCGGGATCTTGTCCGTGATCTCATCAAGTGTGGAGGCATGAAGG
GCATTATGGTTGATGCACCATTTGCTGTATTTGATGAGAATCCTTCAATGAGACGGTCAC
CTGCTGTAAGAAGGGTTGAAGACATGTTTGAACAAGTGAAAACTAAGCTTCCTGGAGCAC
CCAAGTTTCTTTTGTGTGTTCTAGCGGAAAGAAAGAATTCCGATATTTATGGGCCTTGGA
AGAAGAAATGCCTTGCTGAATTTGGGATCGTTACACAGTGTGTGGCACCAACTAGAGTCA
ATGATCAGTATCTTACAAATGTCTTGTTAAAGATTAACGCAAAGTTGGGTGGCTTGAATT
CGTTGCTCCAAATTGAAACATCCCCAGCAATTCCTCTCGTATCCAAGGTCCCAACTATAA
TCTTGGGTATGGACGTATCACACGGATCTCCTGGACATTCTGATATACCGTCTGTTGCTG
CTGTTGTTAGTTCTCGTGAATGGCCTCTTATCTCAAAATACAGAGCATCTGTCCGCACCC
AATCACCAAAAATGGAAATGATTGACTCGTTGTTTAAGCCACGGGAAACTGATGACGATG
GTCTGATTCGGGAGTGTCTGATTGACTTCTACACCAGTTCAGGGAAGAGAAAGCCCGACC
AAGTCATCATCTTCAGGTCTGTTATTATTTTAAATTTTCTGTTTGCAAATCTGAGTAATT
TTTTGTATGGAAGGGACGGTGTTAGTGAAAGTCAGTTTAATCAGGTGCTGAACATTGAGT
TGCAACAAATCATTGAGGCTTGCAAATTTCTTGATGAGAAATGGAATCCCAAGTTCACAT
TGATCATTGCCCAGAAGAATCACCACACTAAATTTTTCATTCCTGGAAAGCCAGATAATG
TTCCAGCTGGCACTGTTGTTGACAACAAAGGAACTACCAGGCCAACTCACTATCACATCC
TGCATGACGAGATAGGCTTCAATCCTGATGACCTGCAGGAGCTGGTGCACTCGCTCTCTT
ATGTGTACCAAAGGAGCACAACAGCCATATCAGTTGTTGCTCCCATCTGCTACGCCCACC
TTGCAGCCGCCCAGGTTGGGCAGTTCATAAAGTTCGACGAGATGTCGGAGACTTCATCTA
GCCATGGGGGGCATACCTCGGCGGGCAGCGTCCCTGTACAGGAGCTGCCCCGTCTGCATG
AGAAAGTGAGGAGCTCCATGTTCTTCTGCTGAGCAGCAGGGAATGTGTCCCTTGGTTTTA
CCTTTTTGGGTGTATGGTCGGGGGTTCTGAACCCATGAACTTGTTGCCTCACTTGGTTCC
AGCCTCAGGAAGAACTTTGTAGGATGCTGAATGGTAGGATTTTTAAGCATCGTTGCAGTT
GTGCTGGGTGGCACGCTGCAACCATTTTGGCTAGCTTGTTGCAGCACTTGGTGCCTTCCT
GAGAGGAAGTAGACTTGGAACCTGGTAGCACGTCCTTAAACCATCCTTTTAAGCGTTGCT
GGTTCGGCCTCTGAGCTGTGTTTG