Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008248_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:8:2564611:2568575:1 gene:Zm00001d008248 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGTTTTTAACGACAACCACAGGAAAAGTATATGAGTATCAGTTTCCAAAATATACAGGT
GGGGCCCAGAGCAATAAGATAAGAGGACAATGGATAAATCACATGTCCCCTGAGCATGCA
AAGGTTGCAAGAAACGTCCCAGGTGTACATGTTCAAGTCGGCAGAATGGTATTCCCACTA
GATGATGGTAGGCTTGGGGAACTACATTTTCCTGGGATGGGGGGTACTGATTTTGGTCCG
AGTGCCCAAAGTACCATAAGAAGAAAACTATCAAACAAGTACGAGTGGTCCATCCTAGAC
GCACCAGAAACAGAAGGTTGGAATGCAGAATATTGCACCGAAGAGCACGGTCCGACAAAT
TGTATTAGTGGAGCAAAGAATATAGCTGCAGACACAGAATCAAATGACTTGAGCAATAAC
CCACCTTCCAGGAGGCGTAAAGTAGAAGAGAAGCAGCACTACCTAAATGTTAACAGATAC
CAGCAGAGTGATGAAACTGAATCATACAACTTTCTATCAAGGACCATTGATCTTAACTTC
CACATGCGGGTGATGCATGCAGACAGATCGCTTTTCCTTATAGCAGACAATGGATTGACT
TTTGAATATCTAAACAGCAATGGTGTTTGGTTGTGGTTAAGACATGAACATGTTACAGCC
ATGAAAGGAACACTAGGAAGCTACAATGGCAGTTTGTATCTTGTCGACGTGCATGGGAAC
TTACACATTAGAGAAAGAAATGGAGATGAACTGTTGTGGATTAACTGCACAGCGATGAAG
AAGGGAAGACAGGTTGCAAGTGGGTCTCCATGGGATGGCATCCCTGGTTTATTGCGCAGA
GTGACAACAGATGATGCACTCTTCTTTGTCAACAAGCGAGGCAGGCTGCTACAGTTCACG
GTTGCGCTGCGGAAATTCAAGTGGAAGGACTGCCACAGTCCTCCTGACACCAAGATTGCT
TTCATAGTGGACCAGGAGGTCTTCAGAAGAAACATCATCTTCGTGGTAGGCCGCAACGGT
CGCCTCTACCAGTACAACAGGATCACGGAGCTCTGGCACAGGCACTACCAATCACCTCAC
CTGTTCCTATCGTGCTCCCCAGGGACGGCCATGCGGCCATCGCCGCTGTCCCTGGCCGGC
TCCCTGTTCATGGTGTCCGAGCACGGGGGGCTGGTGGAGTACCACTTCAGCCCACAGGAC
GGGTGGGAGTGGGTAGAGCACGGGACGCCCCACCGGGGCGTGACCCTCGTCGGCGCCCCT
GGCCCGTGCTTCGACGGCTCCCAGCTGTTCGTGGTCGGCTCCGACGGGCACGTGTACCGG
CGGCACATGGAGGGGAGGACGTGGAGGTGGACGAGCCACGGGCACCCGCCGTCGGAGCCG
GCCGCCGTTGACGAACAGAGCTGCGCCACACCGGACACGGGCGCCGGCGCGCACTACGCC
GACGGGTTCAGGGGGAGCTGCGACGGGAAGGTGGCAGCCGTGCGGCCGGTGCCGTTCTCG
GAGGACGCCGTGGTCTTCGAGCTGCGAGATGGCCGGCTGGCGGAGCTGCGGCGGCCGCCC
TCCGCGGACGGGTGCGGCGGGTGGGAGTGGGCGCGGATTATCGGCACGCCGGCCAGCGCC
TGTATGACCAGCTACTGGACGGCCGTCGCCACGTAG

Peptide Sequence

PEP ID

Zm00001d008248_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:8:2564611:2568575:1 gene:Zm00001d008248 transcript:Zm00001d008248_T005 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MFLTTTTGKVYEYQFPKYTGGAQSNKIRGQWINHMSPEHAKVARNVPGVHVQVGRMVFPL
DDGRLGELHFPGMGGTDFGPSAQSTIRRKLSNKYEWSILDAPETEGWNAEYCTEEHGPTN
CISGAKNIAADTESNDLSNNPPSRRRKVEEKQHYLNVNRYQQSDETESYNFLSRTIDLNF
HMRVMHADRSLFLIADNGLTFEYLNSNGVWLWLRHEHVTAMKGTLGSYNGSLYLVDVHGN
LHIRERNGDELLWINCTAMKKGRQVASGSPWDGIPGLLRRVTTDDALFFVNKRGRLLQFT
VALRKFKWKDCHSPPDTKIAFIVDQEVFRRNIIFVVGRNGRLYQYNRITELWHRHYQSPH
LFLSCSPGTAMRPSPLSLAGSLFMVSEHGGLVEYHFSPQDGWEWVEHGTPHRGVTLVGAP
GPCFDGSQLFVVGSDGHVYRRHMEGRTWRWTSHGHPPSEPAAVDEQSCATPDTGAGAHYA
DGFRGSCDGKVAAVRPVPFSEDAVVFELRDGRLAELRRPPSADGCGGWEWARIIGTPASA
CMTSYWTAVAT

Transcript Sequence

Transcript ID

Zm00001d008248_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:2564611:2568575:1 gene:Zm00001d008248 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AGTTCCACTGGAGACCTCTATGAGTTTGACAAAGAAACAAAGCCATCATGGAAAAAGCAT
ATATGGAGTGAAGAACTGGCGAAAAATATCTCATTAAAATCATCGGCTGGCTTTGCTTTG
CATGGTTTGTCAGGGTCTAACTCAGTGTCTCTTTTCCTGATAAGCAAGGATGGCCTTTTA
GTGGAGCGGCGCTTGCATAGAAGGAAGTGGAAGTGGGACAAACATGGAGCTCCTACGGGT
CAGAGACTTAGTTCAATTGCAGAAGTTCAGAAGGATGAACTTAATGATGCGACTTCAATG
TTTTTAACGACAACCACAGGAAAAGTATATGAGTATCAGTTTCCAAAATATACAGGTGGG
GCCCAGAGCAATAAGATAAGAGGACAATGGATAAATCACATGTCCCCTGAGCATGCAAAG
GTTGCAAGAAACGTCCCAGGTGTACATGTTCAAGTCGGCAGAATGGTATTCCCACTAGAT
GATGGTAGGCTTGGGGAACTACATTTTCCTGGGATGGGGGGTACTGATTTTGGTCCGAGT
GCCCAAAGTACCATAAGAAGAAAACTATCAAACAAGTACGAGTGGTCCATCCTAGACGCA
CCAGAAACAGAAGGTTGGAATGCAGAATATTGCACCGAAGAGCACGGTCCGACAAATTGT
ATTAGTGGAGCAAAGAATATAGCTGCAGACACAGAATCAAATGACTTGAGCAATAACCCA
CCTTCCAGGAGGCGTAAAGTAGAAGAGAAGCAGCACTACCTAAATGTTAACAGATACCAG
CAGAGTGATGAAACTGAATCATACAACTTTCTATCAAGGACCATTGATCTTAACTTCCAC
ATGCGGGTGATGCATGCAGACAGATCGCTTTTCCTTATAGCAGACAATGGATTGACTTTT
GAATATCTAAACAGCAATGGTGTTTGGTTGTGGTTAAGACATGAACATGTTACAGCCATG
AAAGGAACACTAGGAAGCTACAATGGCAGTTTGTATCTTGTCGACGTGCATGGGAACTTA
CACATTAGAGAAAGAAATGGAGATGAACTGTTGTGGATTAACTGCACAGCGATGAAGAAG
GGAAGACAGGTTGCAAGTGGGTCTCCATGGGATGGCATCCCTGGTTTATTGCGCAGAGTG
ACAACAGATGATGCACTCTTCTTTGTCAACAAGCGAGGCAGGCTGCTACAGTTCACGGTT
GCGCTGCGGAAATTCAAGTGGAAGGACTGCCACAGTCCTCCTGACACCAAGATTGCTTTC
ATAGTGGACCAGGAGGTCTTCAGAAGAAACATCATCTTCGTGGTAGGCCGCAACGGTCGC
CTCTACCAGTACAACAGGATCACGGAGCTCTGGCACAGGCACTACCAATCACCTCACCTG
TTCCTATCGTGCTCCCCAGGGACGGCCATGCGGCCATCGCCGCTGTCCCTGGCCGGCTCC
CTGTTCATGGTGTCCGAGCACGGGGGGCTGGTGGAGTACCACTTCAGCCCACAGGACGGG
TGGGAGTGGGTAGAGCACGGGACGCCCCACCGGGGCGTGACCCTCGTCGGCGCCCCTGGC
CCGTGCTTCGACGGCTCCCAGCTGTTCGTGGTCGGCTCCGACGGGCACGTGTACCGGCGG
CACATGGAGGGGAGGACGTGGAGGTGGACGAGCCACGGGCACCCGCCGTCGGAGCCGGCC
GCCGTTGACGAACAGAGCTGCGCCACACCGGACACGGGCGCCGGCGCGCACTACGCCGAC
GGGTTCAGGGGGAGCTGCGACGGGAAGGTGGCAGCCGTGCGGCCGGTGCCGTTCTCGGAG
GACGCCGTGGTCTTCGAGCTGCGAGATGGCCGGCTGGCGGAGCTGCGGCGGCCGCCCTCC
GCGGACGGGTGCGGCGGGTGGGAGTGGGCGCGGATTATCGGCACGCCGGCCAGCGCCTGT
ATGACCAGCTACTGGACGGCCGTCGCCACGTAGCCGCCGCCGGGCGCGACTCACGGAGCT
GGCAGTCCGCTGGTCGCTTGGCTGATTGAGGTCTCCTTGGAAGTTGGAAATGATCCACAA
CAACAGCGGTCACGTCCATGTTTCCTCGAAAGACGGCCACGTCCACATGGGTCTAGGCCG
TATGATGGCCAGATTTGGGCGCCCAAAGAAAGGCAGAAAGGAACTCTCTCGAAAAAAAAA
ACGGCTAACCGTTACATTACATTTGATTGTCTGTTTGGTAATGCATTTTTAGAATACTAT
AGTTTTAAAGCATATAGTACTATAGTTTACAATTGTATATAACATAAGTATTACAATATT
ATTTTACCACAGTAAAATTATAGTATTTC