Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008212_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:8:1355269:1358966:-1 gene:Zm00001d008212 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCGTCTCCGCCGCCGGATCTACTAATCGACGACGCCACCGCCGAGATTCTCCTTCGC
CTCCCACCGGATGACCCAGCGTGCCTCGTGCGCGCCTCCCTTGTCTGCAAGGCTTGGCGG
GAGCTCCTCTCTAGCCCCATCTTCCTCCGCCGCTACCGCAGATTCCACGGCGCGCCGCCC
CTGCTTGGCTTCCTCTACAACATCTACGACGAACGCCCCTGTGCTCGATTCGTCGTCGCC
GCCGACGCCGCCACCACCTTCCCCTTCTCTGCACCGGCGTTCGACCAATTCGATTTGTGG
TTCATCGAGTGCCGCCACGGGCGCGCGCTGCTACAAACTTTCGAGCGGCATGCGCCCGCG
CGCCTCGTCGTCTGGGACCTCATCACGGGCGACCAGCAGCACATACCAATGCCCGTGCCC
GGGTACCCTTACTTCTGCCGCACCGCAGCTGTTCTCTGCGCCGCGGATGGCTGCGATCAT
CTTGACTGCCACGGGGGCCCATACCTCGTCGTCGTCATAGGCGCCTACGAAGAAGATACT
CTCAGGTGGGCGAGCGTCTACTCATCGGAGACTGGCGTATGGACTACGTCATCCTCCATT
CAAATTGATGCCTACGTCGAGCAAAGGCCCAGCCTCCTTGCCGGTGACGCGCTCTACTTT
AGCGCACAGGAAGGCAAAATAATTGTCAAATACGACCTCAATGGACAGAGCCTACATGTG
ATCAATGCGCCGGATATGTTTGAGCCAACAGAGGGCATTGCTGTGACCGTGGAGGACGGT
GGTTTGGGACTCGCCGGAGTGAAGGATGGCAACCTCCACCTGTGGTCATGGCAGGCTGGT
CCTGGCGGCATTGCGGAATGGGTGCAAGGCAGAATCGTAAAGTTGAGGACGCTCTTCCCT
ATTCTTAAACCGCTGGACTCACTTGATGTGATTGGCTTCCAAGAGGGCACAGATACCATT
TTCATTAGCATAGATATGGAGGTCTTTGCAGTCACGCTCAGATCGGAGCAGGTGAAGAAG
GTAGGCAAGACGGGCTCCAAATATGCCATGGCACCCTATGTGAGCTTCTACACTCCAGAT
CTTGCAAAGGGCAGATTGCTATCACCATGA

Peptide Sequence

PEP ID

Zm00001d008212_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:8:1355269:1358966:-1 gene:Zm00001d008212 transcript:Zm00001d008212_T004 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MASPPPDLLIDDATAEILLRLPPDDPACLVRASLVCKAWRELLSSPIFLRRYRRFHGAPP
LLGFLYNIYDERPCARFVVAADAATTFPFSAPAFDQFDLWFIECRHGRALLQTFERHAPA
RLVVWDLITGDQQHIPMPVPGYPYFCRTAAVLCAADGCDHLDCHGGPYLVVVIGAYEEDT
LRWASVYSSETGVWTTSSSIQIDAYVEQRPSLLAGDALYFSAQEGKIIVKYDLNGQSLHV
INAPDMFEPTEGIAVTVEDGGLGLAGVKDGNLHLWSWQAGPGGIAEWVQGRIVKLRTLFP
ILKPLDSLDVIGFQEGTDTIFISIDMEVFAVTLRSEQVKKVGKTGSKYAMAPYVSFYTPD
LAKGRLLSP

Transcript Sequence

Transcript ID

Zm00001d008212_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:1355269:1358966:-1 gene:Zm00001d008212 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GATCGGCCGCGTGCACGGCATGGCGTCTCCGCCGCCGGATCTACTAATCGACGACGCCAC
CGCCGAGATTCTCCTTCGCCTCCCACCGGATGACCCAGCGTGCCTCGTGCGCGCCTCCCT
TGTCTGCAAGGCTTGGCGGGAGCTCCTCTCTAGCCCCATCTTCCTCCGCCGCTACCGCAG
ATTCCACGGCGCGCCGCCCCTGCTTGGCTTCCTCTACAACATCTACGACGAACGCCCCTG
TGCTCGATTCGTCGTCGCCGCCGACGCCGCCACCACCTTCCCCTTCTCTGCACCGGCGTT
CGACCAATTCGATTTGTGGTTCATCGAGTGCCGCCACGGGCGCGCGCTGCTACAAACTTT
CGAGCGGCATGCGCCCGCGCGCCTCGTCGTCTGGGACCTCATCACGGGCGACCAGCAGCA
CATACCAATGCCCGTGCCCGGGTACCCTTACTTCTGCCGCACCGCAGCTGTTCTCTGCGC
CGCGGATGGCTGCGATCATCTTGACTGCCACGGGGGCCCATACCTCGTCGTCGTCATAGG
CGCCTACGAAGAAGATACTCTCAGGTGGGCGAGCGTCTACTCATCGGAGACTGGCGTATG
GACTACGTCATCCTCCATTCAAATTGATGCCTACGTCGAGCAAAGGCCCAGCCTCCTTGC
CGGTGACGCGCTCTACTTTAGCGCACAGGAAGGCAAAATAATTGTCAAATACGACCTCAA
TGGACAGAGCCTACATGTGATCAATGCGCCGGATATGTTTGAGCCAACAGAGGGCATTGC
TGTGACCGTGGAGGACGGTGGTTTGGGACTCGCCGGAGTGAAGGATGGCAACCTCCACCT
GTGGTCATGGCAGGCTGGTCCTGGCGGCATTGCGGAATGGGTGCAAGGCAGAATCGTAAA
GTTGAGGACGCTCTTCCCTATTCTTAAACCGCTGGACTCACTTGATGTGATTGGCTTCCA
AGAGGGCACAGATACCATTTTCATTAGCATAGATATGGAGGTCTTTGCAGTCACGCTCAG
ATCGGAGCAGGTGAAGAAGGTAGGCAAGACGGGCTCCAAATATGCCATGGCACCCTATGT
GAGCTTCTACACTCCAGATCTTGCAAAGGGCAGATTGCTATCACCATGAAGATGCAGTGA
TCCATCCATTAACATGGCCGTGACACTATTGACTTCTTAAGGAGATGATGAGTTAAAGTG
TTTTTCCAGTTTGGACGGTTATGGAAAAAAAGCAAGTTACCATGTTCATTCAGAAAAGTT
TAGTTTCTTACCTGTGCAGTTTAAGTAAGGAACTGTAAGAACAGGATATCATCGTCAAAA
TGTCTAGTCTATTAGTTAAGCTGTTTAAGGGATTGGTTTGTTTTATTGTGGCCTTTTCGC
TATTGTTATTTTATAAGGGATGCCCTGTGTCTATAGAAAATAGCCTAACTAGAAGAACTG
CACAACTCTAGTCTGAGCAGCTTATAAAATAGCAATAGATAGCAATCAGTACCGATCGGT
TTAGCTCCGATGTCGGTCGGTTCGACCGGCCAGTACTGATCCATGCACTGGAGAATCAGT
TGGTACCGACCCTTACCGGTGAGTACCGACCACATGTTGCACGTGCCATATCCTGATTGT
TTCACACCTTTTTGACTGTTTGAAGTTCGAAACATTTCAAAAAATATATATAAATTTTCT
AAAAACAACTGGCTCACTTGATGTGATTGGCTTCCAAGAGGGCACATATACCATTTTCAT
TAGCATAGATATGGAAGTCTTCGCAGTCATGCTCAGATCGGAGCAGGTGAAGACGGTAGG
CAAGACAGGCTCCAAATATGCCATGGCACCCTATGTGAGCTTCTACACTCCAGGTACTGG
CATTGTGCTCATCTTTAACCTTTACATCTTATATATAGATGTTTGTGTTGTCTGTGATCT
GCAAAATTTAGTGAAACAAAGGGTAAGTAAGATTTTACTTATACAGGAATATGAATCATG
GTATCTGTGCATAGGAGTCAGCAGCAATGTATTTATGAAATTAGAAGTCTGCATTCTCAT
ATGCACCACATTACTTGTACGGTTACGGGTATTTAACCCTAGTATGTGCAACACAGTTTT
GCATCTGACTATATGTTTTTCGTTGTGATTTATGTGTCATACTATAAGAGTTAGCAAAAC
TAGATTGGGATGTATGAACTTATAGTTTTTTGTGGTTGTTCTCACTAGCTTAATCTTGGT
CTGGCTCTAGATATTAAGAAACATTCATGAAATTAGCTAGTTGTTTATGGAACTTGATGA
TCTATTGTTCTTTTACTTACTTTATTTATGCTTCAATGACCTATCTGATTCCTGATGCAT
GATCCAAATCCATGTACATGTCTCAAATATGTGTAACTGTTACATGGTTGAAAGTTCTCT
GCATTGTATCTTTTCAGATCGTGCAAAGGGATTTCTATCACCATGAAGATGCAGTGATCC
ATCCATTAACGTGACCGTGGTACTATTGACTTTTTAAAGGAGGTGATGAGTTAAGGCCCT
CCGCACTCATACTAATATAAATTTCTACCCTAAAAAGAATATTCTGTCCTAGTCAGCAAA
ATTCTTTAATCTATACCACAATTCTCCGCACACATGTTTACTCTATATCTCAACCCTATA
CTAATTATCATATATAATTTTATTTCTTCCCAATTCTCTTTCTCTTTGCACTCAACTATT
GAAAGACACAGGTTGTCCGCCCGTGTACGGCGAGTAGGAGGGAACAAACTCTACAAAAGT
ACAAATAGAGTTTTCCATGCTCTCTCAAATTTTACAGTTGCATTTACAAAGTGTCTGCGC
CATTTGTCTACTGCATATGTATACCGTTTGCTTTGGCGTTCGTCACCGCGGCCAGCCTAA
GTGTTTTGTTTCCGGTTTGGACGGTTTATGGGAAAAAAAGTAAGTTACTATGTTCATTCA
GACTATAGTTTCTTACCTGTGCGGTTTAAGCAAGGAACAGGATATCATAGTCAAAATGCC
TAGTCTGTTG