Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d008205_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:8:1077606:1080652:1 gene:Zm00001d008205 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochrome interacting factor3 description: phytochrome interacting factor3
Sequence	ATGTCCGACAGCAGCGACTTCGCCGAGCTGCTATGGGAGAACGGCCAGGCGGTGGTGCAC GCGCGGACGAGGAAACACCCGCCCCAGCAGGCCGCCTTCCCGCCCTTCACCTTCACCTGC AGCAGCAGAGCTCAACAAAGGCAGCCGGTGCCGCCGCTGCTCAAGACGGGAGGAGGTCTC TTTGCCGACTTCTCCTCGGCCACCGCCGGCCTAGACGCCCCCCGTGACAACGCCGACCTC GACGACACCGTGCCGTGGATCCACTACCCCATCCCCATCGTCGACGAAGCCAGTCCCGCC GCGCCTGCCCTGGCAGATAGCTTCATCCCAGATTTCTTCTCGGAGCTGCATGCGGCGGCG GCGACGACGAGCCTCGGCCCTCTGCCACCACCACCACCACCACCACCAGCAGTCCAGCAC ACCGGCGACGACAACGACAACCGGAGCACCCCGGTTCCCAATCCCACCACCGGCAGAGGA CCAGAGCCCTCAAAGGAAACCCACCGCGCACCAGTACCAGGTCCAGCCGGCAGGCCTGAG CCACAACCACAAGCTGAGCTCGCGCCCGCCAGGAAGCCTCGGCAGGAGAGCGGCGGCGGG GAGGCTTTGATGAACTTCTCCATCTTCTCTAGGCCGGCAGCCATGGCGCGTGCCAGCCTG CGGCAGAGGCCGCCACAGACAGGCACCGACAAGGCGTCCAATGCCACCACGAGCACCCGC GTGGAGTCGACGGTGCTACAGTCGGCCAGTGCCAGTGGGCCGAGAACTGCAGCTGCCCCC GCCGTGTTCGTGGACCAGAGGACGGCGTGGCCGTCGCAGCAGCCCAAGGAGGTGCGGTTT CCATGCGCAGCAGCAGCGCCACCGCCGACGCCGACGGCTGGTAACCTGCAGCAAGAAAGA CCTAGCAACAACAACATGACTCCTCCGCAGAAAGAAGTAGAGACCAGGAAGGCGTCAGAG GCTGCGGGCGCCACCGCCACCTCATCGGTCTGCTCCGGCAATGGTGCTGGGACAGGAAAG GACGACGAGTCCTGGCGCCAACAGAAGAGGAAGACCCTGCAGGCCGAGTGTTCCGCGAGT CAAGATGATGATCCTGACGATGAGTCCGGTGGGATGAGAAGATCGTGCAGCAGAGGTGCG AAGCGCAGCCGCACCGCGGAGGTGCACAACCTGTCCGAAAGGAGGAGAAGGGACAGGATC AATGAAAAAATGCGTGCCCTGCAAGAGCTCATCCCCAACTGCAACAAGATTGACAAGGCC TCCATGCTGGACGAAGCGATCGAGTACCTCAAAACCCTCCAGCTTCAAGTGCAGATGATG TCCATGGGAAGTGGGCTGTGCATTCCTCCCATGCTGCTGCCACCAGCCATGCAGCACCTG CAGATTCCTCCGGCTGCTGCTCACTTCCCTCATCTCGGCATGGGATTGGGTTACGGGATG GGTGTCCTCGATATGAACAGCGCGGCGGCGGCGGCGGCGGCGGTTCCATTTCCGCACATG CCCGGTGCTCACTTCCCTTGCCCGATGATCCCAGGCGCGCCACTACCACGGGGTCTCGGA ATCGGAATGCCTGCCAGAAACACGATGCCGGTGTTCGGAGTCCCTCCTGGGCAACCAATC CAGCCACCATTCCCATCTTTGGCGGGCCTTCCTGTCAGGCCAAACCTGGCACCTCCTCAC GCCTCCTCAGCCGCCATGGCTAACATGGTGCAGGAGCAACAGCAGCAGCAGCAGCATCAG AGCCTGAATAATGGAGCATCAACAGCAGCAGCAACAGCATCAGATCCTCAGACTATCGTG CAGGCTGAGAGACAGCATTTTAGTGTGCCCTCTTCAGCACAAACCGAGAGCGATCAGTTT TTGGATGGTGGTGGCAACAGGGCTATTTGTACAGGAAGAAATGAGGCTGAAACATGA

Peptide Sequence

PEP ID	Zm00001d008205_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:8:1077606:1080652:1 gene:Zm00001d008205 transcript:Zm00001d008205_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochrome interacting factor3 description: phytochrome interacting factor3
Sequence	MSDSSDFAELLWENGQAVVHARTRKHPPQQAAFPPFTFTCSSRAQQRQPVPPLLKTGGGL FADFSSATAGLDAPRDNADLDDTVPWIHYPIPIVDEASPAAPALADSFIPDFFSELHAAA ATTSLGPLPPPPPPPPAVQHTGDDNDNRSTPVPNPTTGRGPEPSKETHRAPVPGPAGRPE PQPQAELAPARKPRQESGGGEALMNFSIFSRPAAMARASLRQRPPQTGTDKASNATTSTR VESTVLQSASASGPRTAAAPAVFVDQRTAWPSQQPKEVRFPCAAAAPPPTPTAGNLQQER PSNNNMTPPQKEVETRKASEAAGATATSSVCSGNGAGTGKDDESWRQQKRKTLQAECSAS QDDDPDDESGGMRRSCSRGAKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKA SMLDEAIEYLKTLQLQVQMMSMGSGLCIPPMLLPPAMQHLQIPPAAAHFPHLGMGLGYGM GVLDMNSAAAAAAAVPFPHMPGAHFPCPMIPGAPLPRGLGIGMPARNTMPVFGVPPGQPI QPPFPSLAGLPVRPNLAPPHASSAAMANMVQEQQQQQQHQSLNNGASTAAATASDPQTIV QAERQHFSVPSSAQTESDQFLDGGGNRAICTGRNEAET

Transcript Sequence

Transcript ID	Zm00001d008205_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:1077606:1080652:1 gene:Zm00001d008205 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochrome interacting factor3 description: phytochrome interacting factor3
Sequence	TGAGCAAGGAGCCCTGCTGCTCCCATCACCTTCATCAAGCCAAGCGTGTGTCCTCTGTCC TCTCCCAGCTGCGAGCTCCGACCCCCGGCACCATGTCCGACAGCAGCGACTTCGCCGAGC TGCTATGGGAGAACGGCCAGGCGGTGGTGCACGCGCGGACGAGGAAACACCCGCCCCAGC AGGCCGCCTTCCCGCCCTTCACCTTCACCTGCAGCAGCAGAGCTCAACAAAGGCAGCCGG TGCCGCCGCTGCTCAAGACGGGAGGAGGTCTCTTTGCCGACTTCTCCTCGGCCACCGCCG GCCTAGACGCCCCCCGTGACAACGCCGACCTCGACGACACCGTGCCGTGGATCCACTACC CCATCCCCATCGTCGACGAAGCCAGTCCCGCCGCGCCTGCCCTGGCAGATAGCTTCATCC CAGATTTCTTCTCGGAGCTGCATGCGGCGGCGGCGACGACGAGCCTCGGCCCTCTGCCAC CACCACCACCACCACCACCAGCAGTCCAGCACACCGGCGACGACAACGACAACCGGAGCA CCCCGGTTCCCAATCCCACCACCGGCAGAGGACCAGAGCCCTCAAAGGAAACCCACCGCG CACCAGTACCAGGTCCAGCCGGCAGGCCTGAGCCACAACCACAAGCTGAGCTCGCGCCCG CCAGGAAGCCTCGGCAGGAGAGCGGCGGCGGGGAGGCTTTGATGAACTTCTCCATCTTCT CTAGGCCGGCAGCCATGGCGCGTGCCAGCCTGCGGCAGAGGCCGCCACAGACAGGCACCG ACAAGGCGTCCAATGCCACCACGAGCACCCGCGTGGAGTCGACGGTGCTACAGTCGGCCA GTGCCAGTGGGCCGAGAACTGCAGCTGCCCCCGCCGTGTTCGTGGACCAGAGGACGGCGT GGCCGTCGCAGCAGCCCAAGGAGGTGCGGTTTCCATGCGCAGCAGCAGCGCCACCGCCGA CGCCGACGGCTGGTAACCTGCAGCAAGAAAGACCTAGCAACAACAACATGACTCCTCCGC AGAAAGAAGTAGAGACCAGGAAGGCGTCAGAGGCTGCGGGCGCCACCGCCACCTCATCGG TCTGCTCCGGCAATGGTGCTGGGACAGGAAAGGACGACGAGTCCTGGCGCCAACAGAAGA GGAAGACCCTGCAGGCCGAGTGTTCCGCGAGTCAAGATGATGATCCTGACGATGAGTCCG GTGGGATGAGAAGATCGTGCAGCAGAGGTGCGAAGCGCAGCCGCACCGCGGAGGTGCACA ACCTGTCCGAAAGGAGGAGAAGGGACAGGATCAATGAAAAAATGCGTGCCCTGCAAGAGC TCATCCCCAACTGCAACAAGATTGACAAGGCCTCCATGCTGGACGAAGCGATCGAGTACC TCAAAACCCTCCAGCTTCAAGTGCAGATGATGTCCATGGGAAGTGGGCTGTGCATTCCTC CCATGCTGCTGCCACCAGCCATGCAGCACCTGCAGATTCCTCCGGCTGCTGCTCACTTCC CTCATCTCGGCATGGGATTGGGTTACGGGATGGGTGTCCTCGATATGAACAGCGCGGCGG CGGCGGCGGCGGCGGTTCCATTTCCGCACATGCCCGGTGCTCACTTCCCTTGCCCGATGA TCCCAGGCGCGCCACTACCACGGGGTCTCGGAATCGGAATGCCTGCCAGAAACACGATGC CGGTGTTCGGAGTCCCTCCTGGGCAACCAATCCAGCCACCATTCCCATCTTTGGCGGGCC TTCCTGTCAGGCCAAACCTGGCACCTCCTCACGCCTCCTCAGCCGCCATGGCTAACATGG TGCAGGAGCAACAGCAGCAGCAGCAGCATCAGAGCCTGAATAATGGAGCATCAACAGCAG CAGCAACAGCATCAGATCCTCAGACTATCGTGCAGGCTGAGAGACAGCATTTTAGTGTGC CCTCTTCAGCACAAACCGAGAGCGATCAGTTTTTGGATGGTGGTGGCAACAGGGCTATTT GTACAGGAAGAAATGAGGCTGAAACATGAAAAACACTCAGCAGGTCTCGACTAACAGGCT GCAGATGTGAATATCAGCGCCAACTCATCCTGGAAAAGAGCCTAACGAGTTTCAAGATCC ACGAAGCAGATCCGTCAGTTGAAAAGAGTCCAATCAATCAAGACAGGGCCATGACAGGAC GTCTAGCTTTAGCGAGCTAAGATGCTCCTAAGTTTTGTGTCAAATGTAGATGGTAGATGG AACCTGGTTACAAGAAACATTTCTTGGCAGCCGGTGCTTTTTTTCTTTTTTTTTGGGATT CACTGAAGTTTTCTTGGATCAGTATGTCTTATTTCCTCAGGCATTCAGTGATCATATGCA CAAAGATATTTGTGTCCATATACTGGCTCTGCTTTAACTATATCTCTTTGCAAATAA