Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d008189_T008
CDS Infomation	cds chromosome:B73_RefGen_v4:8:750465:754201:1 gene:Zm00001d008189 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrotransposon protein SINE subclass%3B Retrotransposon protein SINE subclass isoform 1%3B Retrotransposon protein SINE subclass isoform 2%3B Retrotransposon protein SINE subclass isoform 3
Sequence	ATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAACATGCTCCTTG CTACTTGATGCTTCCTCCGATGGACTGTTAAGAATCAACCTGAACAAGAAGAGACTGGAC AAGGAAGCTTTGACTGCTGCGAAATTGGCGAAGAAGGAGAGCAACCTTCGAAGGTCTGTG GGTGCTGACCAGTATCTCAGTGCCTCAACTGATGACATAGTCCCTTTGGACAACTACCTG GACACCCAGTACTTTGGACAGATCAGCATCGGCACGCCACCACAGAACTTCACAGTGATA TTCGACACTGGAAGCTCCAACTTGTGGGTTCCCTCATCCAAGTGCTACTTTTCGATAGCA TGCTACTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGGAGAA TCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCAGTGAGGACAATGTG TTGGTTGGCAACCTTGTTGTGCAAAATCAGAAATTTATTGAGACAACTCGAGAAACCAGC CCTACTTTCATCATTGGGAAGTTTGATGGAATTCTTGGTCTCGGATTTCCTGAAATTTCT GTAGGAGGAGCCCCTCCAATTTGGCAGAGCATGAAACAGCAGAAACTGGTCGCAAAGGAT GTCTTCTCTTTCTGGCTTAATCGTGACCCTGATGCATCTTCTGGAGGAGGCGAGCTTGTC TTTGGTGGTGTTGACCCAAAACACTACAAAGGGGACCATACATATGTTCCCGTTACACGC AAAGGCTACTGGCAGTTTGACATGGGAGATCTTATTATTGGTGGCCACTCAACTGGTTTC TGTGCTGGTGGCTGTGCTGCTATTGTGGACTCAGGGACTTCATTGCTTGCTGGTCCAACT ACCATAGTGGCTCAAGTCAATCATGCAATTGGGGCTGAGGGAATCATCAGTACAGAATGC AAAGAAGTGGTGAGCGAGTATGGAGAGATGATCCTTGAGTTGCTCATATCGCAGACAAGC CCACAGAAAGTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGC AATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTCTGTACTGCT TGTGAGATGGCTGTTGTCTGGATACAGAATCAGCTCCGTGAAAACAAGACAAAAGAACTC ATTTTGAATTATGCTAATCAGCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACT GTTGATTGCCATCAGATCTCAAAGATGCCAAATCTTGCATTCACCATAGCAAACAAGACT TTCACCTTAACACCAGAGCAGTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGC ATCAGTGGGTTTATGGCATTTGACGTACCGCCTCCTCGTGGTCCTCTCTGGATACTTGGT GATGTTTTTATGGGTGCCTACCACACTGTTTTTGACTTCGGTGAGAACAGGATTGGGTTT GCCAAATCTGCATGA

Peptide Sequence

PEP ID	Zm00001d008189_P008
PEP Infomation	pep chromosome:B73_RefGen_v4:8:750465:754201:1 gene:Zm00001d008189 transcript:Zm00001d008189_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrotransposon protein SINE subclass%3B Retrotransposon protein SINE subclass isoform 1%3B Retrotransposon protein SINE subclass isoform 2%3B Retrotransposon protein SINE subclass isoform 3
Sequence	MGQTHLLLLACFWVLSTCSLLLDASSDGLLRINLNKKRLDKEALTAAKLAKKESNLRRSV GADQYLSASTDDIVPLDNYLDTQYFGQISIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIA CYLHHRYKSTKSKTYTKNGESCTITYGSGQIAGFFSEDNVLVGNLVVQNQKFIETTRETS PTFIIGKFDGILGLGFPEISVGGAPPIWQSMKQQKLVAKDVFSFWLNRDPDASSGGGELV FGGVDPKHYKGDHTYVPVTRKGYWQFDMGDLIIGGHSTGFCAGGCAAIVDSGTSLLAGPT TIVAQVNHAIGAEGIISTECKEVVSEYGEMILELLISQTSPQKVCTQIGLCVFDGAHSVS NPIESVVEKQKRGSDLFCTACEMAVVWIQNQLRENKTKELILNYANQLCERLPSPNGEST VDCHQISKMPNLAFTIANKTFTLTPEQYIVKLEQAGQTICISGFMAFDVPPPRGPLWILG DVFMGAYHTVFDFGENRIGFAKSA

Transcript Sequence

Transcript ID	Zm00001d008189_T008
Transcript Infomation	cdna chromosome:B73_RefGen_v4:8:750465:754201:1 gene:Zm00001d008189 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrotransposon protein SINE subclass%3B Retrotransposon protein SINE subclass isoform 1%3B Retrotransposon protein SINE subclass isoform 2%3B Retrotransposon protein SINE subclass isoform 3
Sequence	GGGCAGAAGGTAAGCTACCAGACCATGTCGTAGCCCCTAGTTACTACTGCTTGATTATTA CTTTTCGCTTTTCTTGGGAGTAAAATTTTATTTACTCGCCGTTTTGGGCTGTTCATGTTT CTGTTAGTGTGTTTGGTGCCTTGATTTTTTCAGATAATTGGTGCCTTTCTTGATAAGTTG ATATACAACCGTGGATCCTTGGACTTCGATTTAGTTAGTGACTCCGTAGGTATCAGATAA CCAAAAAAAGAGGAATCACGTGAACTACTGGTTATATTTCCCCTGGATTTCGACAAAGCT TTTTAGGAAATTTCGTACTTTTTTTCATGGAGAAATTTCGAAGACACCAATGAAGTTCTC GCATAAAATAATAAAAAAACCCTAAGCATGCTCGATTTTCATTTTTTTGCCATGAACAAC TGCTAGTCAAGCACAAAACAAGGATTTCCTAATTCTCCACACTCGACAACCATTATTTTC ACAGCTTCAAGAACTCTCAACTTCCCCCCACCCCAACCCAAAAGAAGTGAATACAACCAT AACCTTCACAGCTTCAAGAACTTTTCAACTTCAAGGAAATTTCTAAACAGTAATTCTTTT TTAAGCTGGTGAGGTGTCCCGGCCCTCCTGTTTCCTGAAAAAAAAGCACGACTGAACTAG ATGTTATTAGGTCCGCACATGAATTGCATACGAAATGTTTTCCTGACTGGGGCTAAATTG CTAGTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA CATGCTCCTTGCTACTTGATGCTTCCTCCGATGGACTGTTAAGAATCAACCTGAACAAGA AGAGACTGGACAAGGAAGCTTTGACTGCTGCGAAATTGGCGAAGAAGGAGAGCAACCTTC GAAGGTCTGTGGGTGCTGACCAGTATCTCAGTGCCTCAACTGATGACATAGTCCCTTTGG ACAACTACCTGGACACCCAGTACTTTGGACAGATCAGCATCGGCACGCCACCACAGAACT TCACAGTGATATTCGACACTGGAAGCTCCAACTTGTGGGTTCCCTCATCCAAGTGCTACT TTTCGATAGCATGCTACTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAA AGAATGGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCAGTG AGGACAATGTGTTGGTTGGCAACCTTGTTGTGCAAAATCAGAAATTTATTGAGACAACTC GAGAAACCAGCCCTACTTTCATCATTGGGAAGTTTGATGGAATTCTTGGTCTCGGATTTC CTGAAATTTCTGTAGGAGGAGCCCCTCCAATTTGGCAGAGCATGAAACAGCAGAAACTGG TCGCAAAGGATGTCTTCTCTTTCTGGCTTAATCGTGACCCTGATGCATCTTCTGGAGGAG GCGAGCTTGTCTTTGGTGGTGTTGACCCAAAACACTACAAAGGGGACCATACATATGTTC CCGTTACACGCAAAGGCTACTGGCAGTTTGACATGGGAGATCTTATTATTGGTGGCCACT CAACTGGTTTCTGTGCTGGTGGCTGTGCTGCTATTGTGGACTCAGGGACTTCATTGCTTG CTGGTCCAACTACCATAGTGGCTCAAGTCAATCATGCAATTGGGGCTGAGGGAATCATCA GTACAGAATGCAAAGAAGTGGTGAGCGAGTATGGAGAGATGATCCTTGAGTTGCTCATAT CGCAGACAAGCCCACAGAAAGTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCC ATTCTGTCAGCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTT TCTGTACTGCTTGTGAGATGGCTGTTGTCTGGATACAGAATCAGCTCCGTGAAAACAAGA CAAAAGAACTCATTTTGAATTATGCTAATCAGCTCTGTGAGCGTCTCCCTAGCCCCAATG GCGAGTCAACTGTTGATTGCCATCAGATCTCAAAGATGCCAAATCTTGCATTCACCATAG CAAACAAGACTTTCACCTTAACACCAGAGCAGTACATAGTGAAGCTGGAGCAAGCAGGAC AAACTATCTGCATCAGTGGGTTTATGGCATTTGACGTACCGCCTCCTCGTGGTCCTCTCT GGATACTTGGTGATGTTTTTATGGGTGCCTACCACACTGTTTTTGACTTCGGTGAGAACA GGATTGGGTTTGCCAAATCTGCATGAGGACTGGAGTTCTGCGCTTTAGTAGCATGTCCAG TTTGTTATCCGGGTATTGTACATATATATGTTGCCAACTGGTGTAATCCGCAGTGTTTAA TAGTATATATTCATGCAGAAATCTAGAAGATTGTGGCATGATATGTGTTTGCAAATGGAG CTATGCTATGTATGGAGCTCCAGGACCTAGAGTTTTATGTAAAGGGAGACGATGAGGATT AGGGCTTTTAACCTATTCTCATCACGTTATTGTCCTGATTACTATGTGTAGGTATAGTTG CTGAGCTTGTTTGGGAGCAAGACAATTGGAGGGGATGAGTGGACTAAAATTCCCTTCCTA TCAAAATTGAATATGAAGAGTATTTTAGCTCTTTCAATCTTCTCCAATTCTCTTGCTCCC AAACATGTCCTTATAGTTTGGGGTGTGCCTCTTTTTGTGTTGTAGTTTGGTTTTGATGTT CGATATAACATAATCTTGAGTCGTG