Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d008176_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:8:328884:334699:-1 gene:Zm00001d008176 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SBP-transcription factor 9 description:Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Sequence

ATGGAAAGTTATATTAGACCTGGTTGTGTTATTCTAACTATTTACCTTCACCTCCCTAAT
TGGATGTGGGATGAGTTTAATGATGACCCAGCTTCATGGATAGAAAATCTTATTAGCTTA
TCCAATGATGGATTCTGGAGAACAGGATGGTTGTATGCTAGGGTACAGGACTGCCTAACA
CTGAGTTGCAATGGTAGTCTTATGTTTGCATCTCCCTGGCAACCGGTAATTGGTGACAAG
CATCAGAGACTGTGTGTAACTCCAATTGCAGTTGATTGTTCTTCGTCAGTAAAATTCTCT
GTGAAAGGTTTCAATATAGTTCAGCCAACCACAAAATTACTTTGTGTGTTTGATGAAAAA
TATTTAATTCAAGAAGAGACACAAATGCTACTTGAAGATTCAACTATGCAGCAAGGCCCT
CAATGCCTGACCTTCTCTTGTTCCTTTCCTTGTACAAGTGGAAGAGGATTCATAGAGATT
GAAGACTATGATCAAAGCAGCCTTTCTGTTCCCTTTGTTGTCACGGACAAAGATGTATGT
TCTGAGATTCGGATGTTGGAGCATGGATTGGATTTAGTTTCATTTGATCAAACCTCCAAA
AGAATAGATGATCTGATGATTTATCGCAGTCGAGCATTACATTTTTTGCATGAAATCGGA
TGGCTTCTTCAAAGGAGCCATGTGCGAGCTACGTCTGAGCAGCGACAATATTGTCCTGAC
CGCTTCCCTGTTGCAAGATTTAGATGGCTGCTATCCTTTGCAGTTGATCAGGAATGGTGT
GCTGTTCTAAGGAAGCTTCTGAACACCATGTTCCAGGGTGATATTGATGTATTGTCACCA
ATTGAATTTGCCTTGGGAGAAAATCTATTGCATACTGCGGTCAAAAAACGCTCAAAGCCT
TTAGTTGAATTTCTATTAAGATACACCACAACAAATATTGCTCCAGTGGGCGGTGGAGAT
GGTGCTCCAGTTCAGTTCTTGTTCACTCCTGCGATGACTGAACTGTCAAATATCACACCT
CTTCATATTGCAGCCACAATCAGTGATGCTATTGGTGTTTTAGATGCTTTAACTGATGAT
CCTCAGCAGTTGGGAATCAAAGCGTGGAAGAATGCTCGTGACGCCACTGGCTTCACTCCT
GAGGAATATGCTGCAAAGAGAGGCAACATATCCTATATTCAAATGGTACAGGACAAAATT
GACAGAAGGGTGACCAGAGCTCATGTCTCGGTTACCATCCCCAGCACAATTGATACTGTC
GGAAAGCATGGTAGCCGAATGAAGCCTGCCGATCAAATCACATTTGGTGTTGAGAAAAAA
CAACTAAGCATCAACCAAACATTGAGCTGCAGACAGTGTGTCCAGCAGGCCCAGCAGCTT
GCATTCCATCCCCGGACAAATAGGTTTCTGTCTAATAGGACTGCGATGCTTTCCTTGGTC
TCCATTGCTGCCGTCTGCGTCTGTGTGGGATTGATCATGAAGAGCCTGCCACAAGTTGGT
TGTATGAAGCCTTTCCTCTGGGACAATATACGTTGGGGCCCCAATTGA

Peptide Sequence

PEP ID

Zm00001d008176_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:8:328884:334699:-1 gene:Zm00001d008176 transcript:Zm00001d008176_T018 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SBP-transcription factor 9 description:Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Sequence

MESYIRPGCVILTIYLHLPNWMWDEFNDDPASWIENLISLSNDGFWRTGWLYARVQDCLT
LSCNGSLMFASPWQPVIGDKHQRLCVTPIAVDCSSSVKFSVKGFNIVQPTTKLLCVFDEK
YLIQEETQMLLEDSTMQQGPQCLTFSCSFPCTSGRGFIEIEDYDQSSLSVPFVVTDKDVC
SEIRMLEHGLDLVSFDQTSKRIDDLMIYRSRALHFLHEIGWLLQRSHVRATSEQRQYCPD
RFPVARFRWLLSFAVDQEWCAVLRKLLNTMFQGDIDVLSPIEFALGENLLHTAVKKRSKP
LVEFLLRYTTTNIAPVGGGDGAPVQFLFTPAMTELSNITPLHIAATISDAIGVLDALTDD
PQQLGIKAWKNARDATGFTPEEYAAKRGNISYIQMVQDKIDRRVTRAHVSVTIPSTIDTV
GKHGSRMKPADQITFGVEKKQLSINQTLSCRQCVQQAQQLAFHPRTNRFLSNRTAMLSLV
SIAAVCVCVGLIMKSLPQVGCMKPFLWDNIRWGPN

Transcript Sequence

Transcript ID

Zm00001d008176_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:328884:334699:-1 gene:Zm00001d008176 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SBP-transcription factor 9 description:Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Sequence

GAAAGAGAAGGCCGAGGAAATGGAAGCCGGTTTCCTGTGGAAAGAGATCGGTGACCAAGC
CGGTGCGGCGAGAATGTCCGGTGGGAACAAGAACAGGAGCCTCGACTGGGATTTGAACGA
CTGGAGGTGGGACGCCAACCTGTTCCTGGCCACACCAGCGGCCGCCGCGCCATCCGAGTC
CATCAGCAGGGAGCTGAGCCGAGGTCAGGGGGAGATCGATTTCGGCGTCGTCGTTGACAA
GAGGCGGCGGCTCTCACCAGAGGAGGACGGCAGCGGTGGGTGCAGCAATTCTGCGGTAGC
AGATGGAGACAACAGTCACGTGGTGTGTGTTCAGAGAGGGCGGAACACTGAGGAGACGAG
ACCCAGGAAAGGTGCCAATTCGAGCACCACTCCTTCTTGCCAGGTTGACGGCTGCCAAGC
TGATCTTAGTGGTGCCAGGGACTACCATAAGAGGCACAAGGTGTGTGAAGCGCATACCAG
GACAACAGTGGTCTGCATCAATAATGTAGAGCATCGGTTCTGTCAGCAGTGCAGCAGGTT
TCACCTTCTTCACGAATTTGATGATGGTAAGAAGAGCTGCCGATCACGTCTGGCACAACA
TAATGGAAGGAGAAGGAAAGTTCAACCGCAACCTGCTGTGAACGGGAATTCCATGAATGA
AGATCAGTCTCTAAGTAGCACCTTATTCCTTCTGTTAAAACAACTTTCCGGGCTCGAGTC
TGGTAGCTCTTCTGAGCAAATCAACCATCCTAATTCTTTGGTTAACCTTTTGAAGAACCT
TGCTGCTATTGCTAGCACACATGCATATCAAGATGTTCTAAAGAATGCAACTTCAATATC
ATCAAATGATGGTAATAATGCTGCAAATGGCTCTATAATGCATGAGCAAACCATACGGTC
AATTCCTGTCAGGAGAGAATCATTAGCAGATAGATTCTCCCAGATGTATTTCTGATGTTT
GATTCCGACTTAATATCTCTTATGCACAACATTTGCAGAGCCGAACAGATAAAATTGTGT
TCAAACTCTTTGGAAAAGAGCCAAAAGATTTTCCTGTAGATCTACGGGAACAGATCCTAA
ACTGGTTGTCGCATTATCCAACTGATATGGAAAGTTATATTAGACCTGGTTGTGTTATTC
TAACTATTTACCTTCACCTCCCTAATTGGATGTGGGATGAGTTTAATGATGACCCAGCTT
CATGGATAGAAAATCTTATTAGCTTATCCAATGATGGATTCTGGAGAACAGGATGGTTGT
ATGCTAGGGTACAGGACTGCCTAACACTGAGTTGCAATGGTAGTCTTATGTTTGCATCTC
CCTGGCAACCGGTAATTGGTGACAAGCATCAGAGACTGTGTGTAACTCCAATTGCAGTTG
ATTGTTCTTCGTCAGTAAAATTCTCTGTGAAAGGTTTCAATATAGTTCAGCCAACCACAA
AATTACTTTGTGTGTTTGATGAAAAATATTTAATTCAAGAAGAGACACAAATGCTACTTG
AAGATTCAACTATGCAGCAAGGCCCTCAATGCCTGACCTTCTCTTGTTCCTTTCCTTGTA
CAAGTGGAAGAGGATTCATAGAGATTGAAGACTATGATCAAAGCAGCCTTTCTGTTCCCT
TTGTTGTCACGGACAAAGATGTATGTTCTGAGATTCGGATGTTGGAGCATGGATTGGATT
TAGTTTCATTTGATCAAACCTCCAAAAGAATAGATGATCTGATGATTTATCGCAGTCGAG
CATTACATTTTTTGCATGAAATCGGATGGCTTCTTCAAAGGAGCCATGTGCGAGCTACGT
CTGAGCAGCGACAATATTGTCCTGACCGCTTCCCTGTTGCAAGATTTAGATGGCTGCTAT
CCTTTGCAGTTGATCAGGAATGGTGTGCTGTTCTAAGGAAGCTTCTGAACACCATGTTCC
AGGGTGATATTGATGTATTGTCACCAATTGAATTTGCCTTGGGAGAAAATCTATTGCATA
CTGCGGTCAAAAAACGCTCAAAGCCTTTAGTTGAATTTCTATTAAGATACACCACAACAA
ATATTGCTCCAGTGGGCGGTGGAGATGGTGCTCCAGTTCAGTTCTTGTTCACTCCTGCGA
TGACTGAACTGTCAAATATCACACCTCTTCATATTGCAGCCACAATCAGTGATGCTATTG
GTGTTTTAGATGCTTTAACTGATGATCCTCAGCAGTTGGGAATCAAAGCGTGGAAGAATG
CTCGTGACGCCACTGGCTTCACTCCTGAGGAATATGCTGCAAAGAGAGGCAACATATCCT
ATATTCAAATGGTACAGGACAAAATTGACAGAAGGGTGACCAGAGCTCATGTCTCGGTTA
CCATCCCCAGCACAATTGATACTGTCGGAAAGCATGGTAGCCGAATGAAGCCTGCCGATC
AAATCACATTTGGTGTTGAGAAAAAACAACTAAGCATCAACCAAACATTGAGCTGCAGAC
AGTGTGTCCAGCAGGCCCAGCAGCTTGCATTCCATCCCCGGACAAATAGGTTTCTGTCTA
ATAGGACTGCGATGCTTTCCTTGGTCTCCATTGCTGCCGTCTGCGTCTGTGTGGGATTGA
TCATGAAGAGCCTGCCACAAGTTGGTTGTATGAAGCCTTTCCTCTGGGACAATATACGTT
GGGGCCCCAATTGATAGACTGCAGAAGAGCCAGCCCGATTGTATCAGTGTATGATGAAGA
TGTTTGCGCCGAGCGAAGCTAGTTTCTTGTAATGTACATGTTTCTTATACTAAATGTCTA
ACTTATTTCTGTT