Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007947_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:2:243856297:243861362:1 gene:Zm00001d007947 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LEO1 homolog
Sequence

ATGGAACCTGATGCAAGAGGAATGGACAGTGAAGATGAAGGCTACCAGCAGAGGACAGTA
TCTGGCAGAAGAAGGGGAGTTATTGCCTCCGAATCGGAGGGATCTGAAGATAGTTACTAT
GCTGCTGGAGCTCAAGAAGACGAGGAACCTCGCCAAACAAGGAAACAAAGCTCTCCGTTG
GAGGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGGTGATAGCGATGAAGATGAA
CCAGCTCCATATCGTGTTCGCCATGAAATCGATGAAGATTCTCATAGGTCTCACATGGAG
GATGAAGGCCATTATGAGAAGGACATGCAACCAGATGACGTTGTGGCTGACGAAGATATG
CGATATGAATCTGATGATAATCGTGAACTGAAACCAAAAGAGAAACCAGTCGGTCCACCA
CTAGACTTGGTGGTTCCATTTAAGCAACCACCAGCTCGACCTGACAAAATGAATGTGATC
AAGGTATCAAACATTATGGGGATTGACCCTAAACCCTTTGATCCAAAAACATATGTGGAA
GAAGATGTTTTTGTTACAGATGAATCTGGGACTAAGAAAAGGATACGGCTAGAGGACAAT
ATTGTGCGGTGGAGAACCATTAGGAATGCAGATGGCACTACATCTTGTGAAAGCAATGCA
CGCTTTGTAAAATGGAAGGATGGGACTATGCAGCTTCTGATTGGCAATGAGGTTCTTGAT
ATATCTGTACATGAGGCGCATCATGACCAGTCCCATCTGTTTTTGAGGCATGGGAAGGGA
ATTCTACAATCACAAGGAAGGCTTTTGCACAAAATGCGATTTATGCCATCCTCCCTGTCT
TCAAAGTCGCATCGCTTATTAACTGCTCTGGTTGATTCTCAGAATAAGAAAACTGTTAAG
ATGCAAAAATGGTTTGAGACTAAGGATCCTGAGAAAGCGAAAATGGAAAAAGAAAGGGTT
TTGGGCCAAAATATTCGAGCCCATTCAATCCTTCAACGCAAAAGAGAAAAAGTGAACCGC
AAGTACACACAGCCTGCCCGTCCAAGGCGGCAGCTTTCTCCAGGGTTCTTGGAAGACGCT
CTAGATGAGGATGATGAGCCTGGCTATGATTCTCGGCGAATGCCAGGCCGTAGGCGTTTT
GAGGATGAATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATTAACGCGAAGAAGTCA
AATATGAGCAGAAATGTTCCCCACAAACCACCGTACCCTCCTGCCCGTCCACCGAGACGT
CAAGCGGATGAATACTCGGGGAGTGAGAGGGAGGAGTCAGAGTACGAAACGGATGGCGAG
GATATTGAACATTCACTGCCTCGTGGAAGAAGGGAGGACGAGCTGGATGAGGAGGAAGAA
TACGAGGAAGATGTTGAAGAAGAAGAAGCGCCTCTGTCGGATGAAGAAATGGAGGCACCG
AAACGTAAGAGAGAATCAGGGGGTGGTGGGCAAAGGCGCGAGGAGCTGGTGTCTGAGGAG
GACGACGAGGACCACGACGATTCTCCGCCAAGGAAGCAGCCGGCTGTTTCGCATCGTAGA
AAGGCTGTCGTGTTTGATGACAGCGACGAGGACTAA

Peptide Sequence

PEP ID

Zm00001d007947_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:2:243856297:243861362:1 gene:Zm00001d007947 transcript:Zm00001d007947_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LEO1 homolog
Sequence

MEPDARGMDSEDEGYQQRTVSGRRRGVIASESEGSEDSYYAAGAQEDEEPRQTRKQSSPL
EEERDHEVVRDVFGDSDEDEPAPYRVRHEIDEDSHRSHMEDEGHYEKDMQPDDVVADEDM
RYESDDNRELKPKEKPVGPPLDLVVPFKQPPARPDKMNVIKVSNIMGIDPKPFDPKTYVE
EDVFVTDESGTKKRIRLEDNIVRWRTIRNADGTTSCESNARFVKWKDGTMQLLIGNEVLD
ISVHEAHHDQSHLFLRHGKGILQSQGRLLHKMRFMPSSLSSKSHRLLTALVDSQNKKTVK
MQKWFETKDPEKAKMEKERVLGQNIRAHSILQRKREKVNRKYTQPARPRRQLSPGFLEDA
LDEDDEPGYDSRRMPGRRRFEDELEAEALAERRIINAKKSNMSRNVPHKPPYPPARPPRR
QADEYSGSEREESEYETDGEDIEHSLPRGRREDELDEEEEYEEDVEEEEAPLSDEEMEAP
KRKRESGGGGQRREELVSEEDDEDHDDSPPRKQPAVSHRRKAVVFDDSDED

Transcript Sequence

Transcript ID

Zm00001d007947_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:243856297:243861362:1 gene:Zm00001d007947 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LEO1 homolog
Sequence

CTAGGAGGAAGTGGATGGTGAGGCAGAGAATGGAGGGGAAGGGGAAGGCGAAAGTGAAGG
GCAAGTTGTAATCGAAGAGGAAAGTGAAGGTGAAGCTCATGGTGCCGATCTTGATCAAGG
AGAAAGTGATGGGGACAAAGTCCAGAGCTCCCCAGAAAGAGAACTCGATGACCAGAGGAT
GGAACCTGATGCAAGAGGAATGGACAGTGAAGATGAAGGCTACCAGCAGAGGACAGTATC
TGGCAGAAGAAGGGGAGTTATTGCCTCCGAATCGGAGGGATCTGAAGATAGTTACTATGC
TGCTGGAGCTCAAGAAGACGAGGAACCTCGCCAAACAAGGAAACAAAGCTCTCCGTTGGA
GGAAGAAAGAGATCATGAAGTAGTTCGTGATGTGTTTGGTGATAGCGATGAAGATGAACC
AGCTCCATATCGTGTTCGCCATGAAATCGATGAAGATTCTCATAGGTCTCACATGGAGGA
TGAAGGCCATTATGAGAAGGACATGCAACCAGATGACGTTGTGGCTGACGAAGATATGCG
ATATGAATCTGATGATAATCGTGAACTGAAACCAAAAGAGAAACCAGTCGGTCCACCACT
AGACTTGGTGGTTCCATTTAAGCAACCACCAGCTCGACCTGACAAAATGAATGTGATCAA
GGTATCAAACATTATGGGGATTGACCCTAAACCCTTTGATCCAAAAACATATGTGGAAGA
AGATGTTTTTGTTACAGATGAATCTGGGACTAAGAAAAGGATACGGCTAGAGGACAATAT
TGTGCGGTGGAGAACCATTAGGAATGCAGATGGCACTACATCTTGTGAAAGCAATGCACG
CTTTGTAAAATGGAAGGATGGGACTATGCAGCTTCTGATTGGCAATGAGGTTCTTGATAT
ATCTGTACATGAGGCGCATCATGACCAGTCCCATCTGTTTTTGAGGCATGGGAAGGGAAT
TCTACAATCACAAGGAAGGCTTTTGCACAAAATGCGATTTATGCCATCCTCCCTGTCTTC
AAAGTCGCATCGCTTATTAACTGCTCTGGTTGATTCTCAGAATAAGAAAACTGTTAAGAT
GCAAAAATGGTTTGAGACTAAGGATCCTGAGAAAGCGAAAATGGAAAAAGAAAGGGTTTT
GGGCCAAAATATTCGAGCCCATTCAATCCTTCAACGCAAAAGAGAAAAAGTGAACCGCAA
GTACACACAGCCTGCCCGTCCAAGGCGGCAGCTTTCTCCAGGGTTCTTGGAAGACGCTCT
AGATGAGGATGATGAGCCTGGCTATGATTCTCGGCGAATGCCAGGCCGTAGGCGTTTTGA
GGATGAATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATTAACGCGAAGAAGTCAAA
TATGAGCAGAAATGTTCCCCACAAACCACCGTACCCTCCTGCCCGTCCACCGAGACGTCA
AGCGGATGAATACTCGGGGAGTGAGAGGGAGGAGTCAGAGTACGAAACGGATGGCGAGGA
TATTGAACATTCACTGCCTCGTGGAAGAAGGGAGGACGAGCTGGATGAGGAGGAAGAATA
CGAGGAAGATGTTGAAGAAGAAGAAGCGCCTCTGTCGGATGAAGAAATGGAGGCACCGAA
ACGTAAGAGAGAATCAGGGGGTGGTGGGCAAAGGCGCGAGGAGCTGGTGTCTGAGGAGGA
CGACGAGGACCACGACGATTCTCCGCCAAGGAAGCAGCCGGCTGTTTCGCATCGTAGAAA
GGCTGTCGTGTTTGATGACAGCGACGAGGACTAAAATTTGTAAAACCGTATGACGACCTG
ACATGATACGCTTGCTTTTTCTCCCCATTTGTTTAAGAGAATGATTAGTTATTTTTCGTC
ATGCTGGTGTAATATG