Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007938_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:2:243464573:243479647:1 gene:Zm00001d007938 gene_biotype:protein_coding transcript_biotype:protein_coding description:Suppressor of RPS4-RLD 1
Sequence

ATGGATGCATCAACTTGTGATACCAAAGTTGTTATCTCAGAAGATCGTGTTGCTGACACG
TCGTTCGCTGCAACTACAATGGCTGATACAAAAACTGTTGTCTGTGAAGAGGCCATTGGC
AGTTCCAAAGTTTCATCAAATGGTGATACCAAGTTGACGAATTATAATAAAAAAGCGGAC
CATAATAAAGTCTCTAGCAGTTCAGTGAAAGACATCACAGGGACTCAAGCTCCCAAGAAG
GCACCGAAGCTAGATAAGAAAAACAAAGCAAAAGCTGTGAAAGAAATAAATGGCCGAGCT
GAAGGTGTAACTGGCAGAGCTAGTACTGATGAAAGTGAAACTATTTCACTGGATCAAGCA
CTCTTTGCTACAAAAATTTCAAAGTCATCAAAATCTATAAGCTTGGATTTCCGACTTTCA
AGAGGCATTGCACAGGTAAATGAAGGAAGATATGACCAGGCGATATCCATTTTTGATCAG
ATATTGCGGGAAACTCCTACGTATCCTGAAGCACTGATTGGAAGGGGCACAGCTTATGCA
TTTCAAAGAGAATTGGATTCTGCTATTTCTGATTTCACCAAGGCTATACAATCTAGCCCA
TCGGCTGGGGAGGCATGGAAGCGACGGGGACAAGCTCGTGCTGCTTTAGGAGAGTTCAAG
GAGGCCATTGAAGACTTGACTAAAGCATTGGAATTTGAACCAAATTCTCCTGATATTTTA
CATGAAAGAGGAATTGTGAACTTCAAATTCAAGGACTACAACTCTGCACTCGAAGATCTT
TCGACATGTGTGAAGCATGACAAGAAGAACAGCTCCGCTCACACTTATTTAGGTCTTACT
CTTTCAGCACTTGGAGAGTACAAGCGTGCTGAAGATGAGCATGTCATTGGTTTAAAGTAT
GACGAGAGTTTCCTTGACTGTTGGGCTCACCTTGCCCAGCTTTATCTTGATTTGGCATAT
CCAGAGAAGTTGTTGAATTGCCTTGAGAAAGCTATTCAAATTGATTCAAGGTTCGCAAAA
GCTTACCATCTGCGTGGAATTCTCTACCATGGAATGGGTCGACATAGGAGTGCTATTAAA
GAATTATCGGTTGCTTTGACATATGAAAGTTCAAGTATAGAGTGCCTATACTTACGTGCC
TCAAGCCATCATGCAATTGGAGAATATAAAGCTGCGATAAAAGGTTATGATGATGTACTT
GATTTGGAACTTGATTCCATGGATAAATTTGTGTTGCAATGTTTGTCCTTCTACCAGAAG
GAAATGGCTCTGTATATTGCTTCAAAGGCCAATTTAGAGTTCTCTCAGTTCAACATTGAT
GATGATGTTGACCCACTATTTAAGGAATACTGGTGCAAACGACTACATCCCAAAAATGTG
GCTGAAAAGGTTTATCGCCAGCCACCGTTGCGGATCTCATTGAGAAGTGGGCGCCTTAAC
AAGCAAGACTTCAAATTCACAAAGCATCAAACAACTCTTCTTCTAGCTGCAGATTCAATT
GGGAAGAAGATTCAATACAATTGTCATGGCTTCTTACCAAATCAACGTCAGTACCGCATG
GCCGGGTTGGCTGCTATTGAGATTGCTCAGAAAGTGTCCAAGGCTTGGCGCTTTCTAAGG
AATCCGAAGAACATCGCAAAGTTAGTTAGGAAAAGGGATAAACTTAACATGAGCCAGAAC
AGGGGAGGTTATTGTAGCACTAGCACTTTGGCTGGATCTCCAACTTCCAGCCCAAATGAA
GACAGGGTCTCCTCCGGGATCTCTCTTTCCTGGCAGGATGTCTATAACATTGCTGTTAAG
TGGAGACAAATTTCTGAACCTTGTGATCCAGTTGTTTGGGTCAATAAGCTAAGGTGA

Peptide Sequence

PEP ID

Zm00001d007938_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:2:243464573:243479647:1 gene:Zm00001d007938 transcript:Zm00001d007938_T018 gene_biotype:protein_coding transcript_biotype:protein_coding description:Suppressor of RPS4-RLD 1
Sequence

MDASTCDTKVVISEDRVADTSFAATTMADTKTVVCEEAIGSSKVSSNGDTKLTNYNKKAD
HNKVSSSSVKDITGTQAPKKAPKLDKKNKAKAVKEINGRAEGVTGRASTDESETISLDQA
LFATKISKSSKSISLDFRLSRGIAQVNEGRYDQAISIFDQILRETPTYPEALIGRGTAYA
FQRELDSAISDFTKAIQSSPSAGEAWKRRGQARAALGEFKEAIEDLTKALEFEPNSPDIL
HERGIVNFKFKDYNSALEDLSTCVKHDKKNSSAHTYLGLTLSALGEYKRAEDEHVIGLKY
DESFLDCWAHLAQLYLDLAYPEKLLNCLEKAIQIDSRFAKAYHLRGILYHGMGRHRSAIK
ELSVALTYESSSIECLYLRASSHHAIGEYKAAIKGYDDVLDLELDSMDKFVLQCLSFYQK
EMALYIASKANLEFSQFNIDDDVDPLFKEYWCKRLHPKNVAEKVYRQPPLRISLRSGRLN
KQDFKFTKHQTTLLLAADSIGKKIQYNCHGFLPNQRQYRMAGLAAIEIAQKVSKAWRFLR
NPKNIAKLVRKRDKLNMSQNRGGYCSTSTLAGSPTSSPNEDRVSSGISLSWQDVYNIAVK
WRQISEPCDPVVWVNKLR

Transcript Sequence

Transcript ID

Zm00001d007938_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:243464573:243479647:1 gene:Zm00001d007938 gene_biotype:protein_coding transcript_biotype:protein_coding description:Suppressor of RPS4-RLD 1
Sequence

GTCCGTGACACAACAGACTTGAAACAATTGCTTGATCTGGAAGAATTGGTTTCTTCTGTT
AAAATTTGCGGGACAACCCAGTCTGCGGACCATGTCATGGATGCATCAACTTGTGATACC
AAAGTTGTTATCTCAGAAGATCGTGTTGCTGACACGTCGTTCGCTGCAACTACAATGGCT
GATACAAAAACTGTTGTCTGTGAAGAGGCCATTGGCAGTTCCAAAGTTTCATCAAATGGT
GATACCAAGTTGACGAATTATAATAAAAAAGCGGACCATAATAAAGTCTCTAGCAGTTCA
GTGAAAGACATCACAGGGACTCAAGCTCCCAAGAAGGCACCGAAGCTAGATAAGAAAAAC
AAAGCAAAAGCTGTGAAAGAAATAAATGGCCGAGCTGAAGGTGTAACTGGCAGAGCTAGT
ACTGATGAAAGTGAAACTATTTCACTGGATCAAGCACTCTTTGCTACAAAAATTTCAAAG
TCATCAAAATCTATAAGCTTGGATTTCCGACTTTCAAGAGGCATTGCACAGGTAAATGAA
GGAAGATATGACCAGGCGATATCCATTTTTGATCAGATATTGCGGGAAACTCCTACGTAT
CCTGAAGCACTGATTGGAAGGGGCACAGCTTATGCATTTCAAAGAGAATTGGATTCTGCT
ATTTCTGATTTCACCAAGGCTATACAATCTAGCCCATCGGCTGGGGAGGCATGGAAGCGA
CGGGGACAAGCTCGTGCTGCTTTAGGAGAGTTCAAGGAGGCCATTGAAGACTTGACTAAA
GCATTGGAATTTGAACCAAATTCTCCTGATATTTTACATGAAAGAGGAATTGTGAACTTC
AAATTCAAGGACTACAACTCTGCACTCGAAGATCTTTCGACATGTGTGAAGCATGACAAG
AAGAACAGCTCCGCTCACACTTATTTAGGTCTTACTCTTTCAGCACTTGGAGAGTACAAG
CGTGCTGAAGATGAGCATGTCATTGGTTTAAAGTATGACGAGAGTTTCCTTGACTGTTGG
GCTCACCTTGCCCAGCTTTATCTTGATTTGGCATATCCAGAGAAGTTGTTGAATTGCCTT
GAGAAAGCTATTCAAATTGATTCAAGGTTCGCAAAAGCTTACCATCTGCGTGGAATTCTC
TACCATGGAATGGGTCGACATAGGAGTGCTATTAAAGAATTATCGGTTGCTTTGACATAT
GAAAGTTCAAGTATAGAGTGCCTATACTTACGTGCCTCAAGCCATCATGCAATTGGAGAA
TATAAAGCTGCGATAAAAGGTTATGATGATGTACTTGATTTGGAACTTGATTCCATGGAT
AAATTTGTGTTGCAATGTTTGTCCTTCTACCAGAAGGAAATGGCTCTGTATATTGCTTCA
AAGGCCAATTTAGAGTTCTCTCAGTTCAACATTGATGATGATGTTGACCCACTATTTAAG
GAATACTGGTGCAAACGACTACATCCCAAAAATGTGGCTGAAAAGGTTTATCGCCAGCCA
CCGTTGCGGATCTCATTGAGAAGTGGGCGCCTTAACAAGCAAGACTTCAAATTCACAAAG
CATCAAACAACTCTTCTTCTAGCTGCAGATTCAATTGGGAAGAAGATTCAATACAATTGT
CATGGCTTCTTACCAAATCAACGTCAGTACCGCATGGCCGGGTTGGCTGCTATTGAGATT
GCTCAGAAAGTGTCCAAGGCTTGGCGCTTTCTAAGGAATCCGAAGAACATCGCAAAGTTA
GTTAGGAAAAGGGATAAACTTAACATGAGCCAGAACAGGGGAGGTTATTGTAGCACTAGC
ACTTTGGCTGGATCTCCAACTTCCAGCCCAAATGAAGACAGGGTCTCCTCCGGGATCTCT
CTTTCCTGGCAGGATGTCTATAACATTGCTGTTAAGTGGAGACAAATTTCTGAACCTTGT
GATCCAGTTGTTTGGGTCAATAAGCTAAGGTGAGCTAAATGTTTGTACATGGAATACTAA
ACTGTTTAACAATTTTCTTACTCTTTCTCTTTTACCAGTGAAGAGTTCAATTCTGGATTT
GGTTCTCATACCCCAATGCTTCTTGGTCAAGCAAAAGTTATTCGCTACTATCCATATTAC
CAAAGAGTCTTGGAAACTGCGAAGACTATAATGCTTGACTTGAAGTATGTCAATAATGCA
GAGGACCGTGCAATTTTTCTTACAGATATTGACAAGTTGAAAAAGATAGAAATTGCATCG
TCATGCTCAGATTTGTACCATGTAGTTGGTGAGACCTACTGGGTTGCTACAAGATGTGAT
AGTATGGCGTTTCGGGGGAGGCGCCTTGAAGGGACAAGAATTACCACTCAAAACATAGGC
AAGACAGGATTTGACTTTGCAATTCGAACACCTTGCACGCCATCGAGATGGGAGGAGTAT
GATGAAGAAATGACTGCAGCCTGGGAGGCTATTTGTGAGGCATATTGTAATGACACAAAC
CCCACACGAGACCCTGGTGTGCTTGATGCTGTGAAGGACGCGATATTGCGGATGACATAT
TACTGGTACAATTTTATGCCTCTTTCGAGAGGCTCGGCTGTTGTTGGCTACGTAGTGTTG
CTCGGTTTATTCCTGGCAGCAAACATGGATATTACTGCCAGCATTCCACCCGGTGTCCAA
GTTGATTGGGAGGCGATCCTGTCTCCAGATCCCGGCACATTTGTTGACGCCGTGAAGCCC
TGGTTGTACCCATCCACAAAAATAAGCAGGTGCCTGAAAGATTACACGGACGTCAGCTGC
GCGTTCAGCACGACAGGTTCGGTTGTAGCGGCCCTAACATCTGTTGACCCATAGGTTATT
TGTCCAAGTGTTATAGGTTGCTCCAGTTGTTAGTGTATTTGTTTCAAAATACCTCAGCTT
TGCTTAGCTTGTCAGAATTTCTCAGTTTGCAAAAAGTTTGTATGTTTCTGTGTTGTATAC
AGATATGCAGTAATGTTGTAACTTGAAAAAAAATAAGATTTATTTTCATTGGAACAAGTT
TTTTTTTTTTTTTTGTAATAAACAGTTAAACACCAATAAGTTTTGCAGTTACTT