Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007905_T022
CDS Infomation

cds chromosome:B73_RefGen_v4:2:242175813:242196118:-1 gene:Zm00001d007905 gene_biotype:protein_coding transcript_biotype:protein_coding description:Valine--tRNA ligase chloroplastic/mitochondrial 2
Sequence

ATGGCGCTCGCGCGCCCGTCCTCCGCTCTCCTCTCATGCTCCTCGTCCGCCTGCCTCCGC
CGGCTCAACCCGCTCCTCCTCTCTGCCGCCGCCTGCCGCCGCCCGGCGTGGGCCCCGCGC
CGCGTCGCCCGCAGGTTCTCCGCAGCGATTGCCTCCGAGACGGATGTGTTCAACTCCCCG
GAGGTCGCTAAGTCGTTCGACTTCACCAACGAGGAGAAAATTTACAAATGGTGGGAATCT
CAAGGATTCTTTAAGCCTAACTTTGACCGTGGAGGAGATCCATTTGTCATCCCGATGCCA
CCACCAAATGTTACCGGATCACTGCATATGGGCCATGCTATGTTTGTCACACTTGAGGAT
ATAATGGTTAGATATTTCCGAATGAAAGGGAGACCTGCGCTGTGGATACCTGGCACTGAC
CATGCTGGGATTGCGACTCAGTTGGTTGTGGAAAAGATGCTGGCCGCTGAAGGTGTCAAG
AGGACAGATATGACGCGAGAGGAGTTCACCAAAAAAGTTTGGGAGTGGAAAGAGAAATAT
GGGGGTACTATCACTAATCAGATTAAGCGATTGGGTGCATCTTGTGATTGGAGTCGTGAG
CGTTTCACTCTTGATGAACAATTGAGCCGTGCAGTTGCTGAAGCATTCGTTAGGCTTCAT
GATAAAGGGCTTATATATCAAGGATCTTATTTGGTCAACTGGTCTCCTAACCTGCAAACT
GCAGTATCTGATTTAGAAGTAGAATACTCTGAAGAACCTGGAAATTTGTACTTCATCAAG
TACCGTGTTGCTGGCGGAACCAGGGATGATTTTATGACTATCGCAACCACAAGACCTGAA
ACAATATTTGGTGATGTTGCAATTGCTGTTAATCCGGAGGATAAGCGTTATGCACAATAT
GTTGGCAAATTGGCTATTGTACCGTTGACATGTGGGAGACATGTCCCTATTATTGCTGAT
CGGTATGTTGATCCAGAATTTGGAACTGGGGTGCTGAAGATTAGCCCTGGACATGATCAT
AACGATTATCATATTGCTCGAAAGCTTGGACTGCCAATTCTTAATGTTATGAACAAAGAT
GGTACGCTCAATGATGTTGCTGGAATATACAGTGGTATGGATCGATTTGAAGCCCGAGAG
AAATTGTGGTCTGACCTTGTTGAGACTAACTTAGCAGTAAAGAAAGAACCATATACACTT
CGAGTCCCTAGGTCCCAACGGGGTGGTGAAGTTATTGAGCCTTTGATTAGTAAGCAATGG
TTTGTTACGATGGAGCCATTGGCTGAAAAGGCTCTCCATGCTGTTGAAAAGGGGCAATTA
ACCATTCTTCCGGAGAGATTTGAGAAGATTTATAATCATTGGCTAACGAACATAAAGGAT
TGGTGTATAAGTAGACAATTGTGGTGGGGTCATCGTATACCAGTTTGGTATATTGTTGGA
AAGAAATGTGAAGAAGACTATATTGTTGCTAGAACCGAAGAGGAGGCGATTGCAGAAGCT
CATGAAAAATATGGAAAATCAGTTGAAATATATCAAGACCCTGATGTTCTTGATACTTGG
TTCTCAAGTGCTCTGTGGCCTTTCAGCACGCTTGGTTGGCCTGATCTTTCCAAGGAGGAT
TATAAGCATTTTTATCCTTCAACTGTTCTGGAGACAGGCCACGATATTTTGTTCTTCTGG
GTTGCACGAATGGTCATGATGGGAATTGAGTTCACAGGATCAGTACCATTTTCTTATGTC
TATCTACATGGTCTTATCCGGGATGCTGAGGGTCGAAAAATGTCGAAGACATTAGGGAAT
GTCATTGATCCCCTAGATACCATCAAAGAGTACGGGACAGATGCTTTGAGATTTACACTA
TCTTTGGGCACTGCAGGCCAGGACCTCAATCTCTCTACAGAAAGGTTGACGTCAAATAAG
GCTTTCACAAACAAGCTGTGGAACGCAGGGAAATTTTTGTTACAGAACTTGCCTGATAAA
AATGATGTCTCTGCATGGGATGTCTTGTTGTCTAATAAGTTCGACTCAGAAGCATCACTC
CAGAAACTGCCATTGCCAGAATGCTGGGTGGTTACAGGACTACATGAACTCATCGATAAG
GTCAGCAGAAGCTATGATAAGTTTTTCTTCGGAGATGCTGCTAGAGAAATATATGATTAC
TTCTGGGGGGATTTTGCTGATTGGTATATTGAAGCTAGCAAAACACGGCTTTACCACTCG
AGTGACAAGATCGCTGCTGCTACAGCCCAGAGTGTTCTGGTGTATGTGTTTGAAAACATA
CTGAAGTTATTGCATCCCTTCATGCCATTCGTCACTGAAGAATTATGGCAGGCATTTCCA
TACAGAAAACAAGCACTTATGGTTACTCCCTGGCCTACCACTGACCTTCCTAAAGATTTG
AGGTCCATCAAACGGTTCCAGAATTTGCAATCATTGATAAGAGGAATCAGAAATGTTCGA
GCAGAATATTCTGTTGAGCCAGCTAAACGGATATCAGCTTCTGTTGTTGCTACTGCGGAT
GTCCTGGAATACGTATCAGTAAGTGTGCAGATCCATTTTGTTAGTGACACTTTTTTTCTC
GAATGCGCAGGAGAACTGCGCATCTTATATAAAAGAGAGGAAGAAAAGCCATACAAAAGA
TGGCATCTTGCTGAGCAAGTTCCCCAAGGATCCTACACACAACCGTAG

Peptide Sequence

PEP ID

Zm00001d007905_P022
PEP Infomation

pep chromosome:B73_RefGen_v4:2:242175813:242196118:-1 gene:Zm00001d007905 transcript:Zm00001d007905_T022 gene_biotype:protein_coding transcript_biotype:protein_coding description:Valine--tRNA ligase chloroplastic/mitochondrial 2
Sequence

MALARPSSALLSCSSSACLRRLNPLLLSAAACRRPAWAPRRVARRFSAAIASETDVFNSP
EVAKSFDFTNEEKIYKWWESQGFFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLED
IMVRYFRMKGRPALWIPGTDHAGIATQLVVEKMLAAEGVKRTDMTREEFTKKVWEWKEKY
GGTITNQIKRLGASCDWSRERFTLDEQLSRAVAEAFVRLHDKGLIYQGSYLVNWSPNLQT
AVSDLEVEYSEEPGNLYFIKYRVAGGTRDDFMTIATTRPETIFGDVAIAVNPEDKRYAQY
VGKLAIVPLTCGRHVPIIADRYVDPEFGTGVLKISPGHDHNDYHIARKLGLPILNVMNKD
GTLNDVAGIYSGMDRFEAREKLWSDLVETNLAVKKEPYTLRVPRSQRGGEVIEPLISKQW
FVTMEPLAEKALHAVEKGQLTILPERFEKIYNHWLTNIKDWCISRQLWWGHRIPVWYIVG
KKCEEDYIVARTEEEAIAEAHEKYGKSVEIYQDPDVLDTWFSSALWPFSTLGWPDLSKED
YKHFYPSTVLETGHDILFFWVARMVMMGIEFTGSVPFSYVYLHGLIRDAEGRKMSKTLGN
VIDPLDTIKEYGTDALRFTLSLGTAGQDLNLSTERLTSNKAFTNKLWNAGKFLLQNLPDK
NDVSAWDVLLSNKFDSEASLQKLPLPECWVVTGLHELIDKVSRSYDKFFFGDAAREIYDY
FWGDFADWYIEASKTRLYHSSDKIAAATAQSVLVYVFENILKLLHPFMPFVTEELWQAFP
YRKQALMVTPWPTTDLPKDLRSIKRFQNLQSLIRGIRNVRAEYSVEPAKRISASVVATAD
VLEYVSVSVQIHFVSDTFFLECAGELRILYKREEEKPYKRWHLAEQVPQGSYTQP

Transcript Sequence

Transcript ID

Zm00001d007905_T022
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:242175813:242196118:-1 gene:Zm00001d007905 gene_biotype:protein_coding transcript_biotype:protein_coding description:Valine--tRNA ligase chloroplastic/mitochondrial 2
Sequence

GGCTCCCTCTCAGCGATAGCGGCATCCGAGCCCTCCTGCGCGCCCACTAGGGTTTATCTC
AAGCGAGGCCGCGCCAACCGCCAATGGCGCTCGCGCGCCCGTCCTCCGCTCTCCTCTCAT
GCTCCTCGTCCGCCTGCCTCCGCCGGCTCAACCCGCTCCTCCTCTCTGCCGCCGCCTGCC
GCCGCCCGGCGTGGGCCCCGCGCCGCGTCGCCCGCAGGTTCTCCGCAGCGATTGCCTCCG
AGACGGATGTGTTCAACTCCCCGGAGGTCGCTAAGTCGTTCGACTTCACCAACGAGGAGA
AAATTTACAAATGGTGGGAATCTCAAGGATTCTTTAAGCCTAACTTTGACCGTGGAGGAG
ATCCATTTGTCATCCCGATGCCACCACCAAATGTTACCGGATCACTGCATATGGGCCATG
CTATGTTTGTCACACTTGAGGATATAATGGTTAGATATTTCCGAATGAAAGGGAGACCTG
CGCTGTGGATACCTGGCACTGACCATGCTGGGATTGCGACTCAGTTGGTTGTGGAAAAGA
TGCTGGCCGCTGAAGGTGTCAAGAGGACAGATATGACGCGAGAGGAGTTCACCAAAAAAG
TTTGGGAGTGGAAAGAGAAATATGGGGGTACTATCACTAATCAGATTAAGCGATTGGGTG
CATCTTGTGATTGGAGTCGTGAGCGTTTCACTCTTGATGAACAATTGAGCCGTGCAGTTG
CTGAAGCATTCGTTAGGCTTCATGATAAAGGGCTTATATATCAAGGATCTTATTTGGTCA
ACTGGTCTCCTAACCTGCAAACTGCAGTATCTGATTTAGAAGTAGAATACTCTGAAGAAC
CTGGAAATTTGTACTTCATCAAGTACCGTGTTGCTGGCGGAACCAGGGATGATTTTATGA
CTATCGCAACCACAAGACCTGAAACAATATTTGGTGATGTTGCAATTGCTGTTAATCCGG
AGGATAAGCGTTATGCACAATATGTTGGCAAATTGGCTATTGTACCGTTGACATGTGGGA
GACATGTCCCTATTATTGCTGATCGGTATGTTGATCCAGAATTTGGAACTGGGGTGCTGA
AGATTAGCCCTGGACATGATCATAACGATTATCATATTGCTCGAAAGCTTGGACTGCCAA
TTCTTAATGTTATGAACAAAGATGGTACGCTCAATGATGTTGCTGGAATATACAGTGGTA
TGGATCGATTTGAAGCCCGAGAGAAATTGTGGTCTGACCTTGTTGAGACTAACTTAGCAG
TAAAGAAAGAACCATATACACTTCGAGTCCCTAGGTCCCAACGGGGTGGTGAAGTTATTG
AGCCTTTGATTAGTAAGCAATGGTTTGTTACGATGGAGCCATTGGCTGAAAAGGCTCTCC
ATGCTGTTGAAAAGGGGCAATTAACCATTCTTCCGGAGAGATTTGAGAAGATTTATAATC
ATTGGCTAACGAACATAAAGGATTGGTGTATAAGTAGACAATTGTGGTGGGGTCATCGTA
TACCAGTTTGGTATATTGTTGGAAAGAAATGTGAAGAAGACTATATTGTTGCTAGAACCG
AAGAGGAGGCGATTGCAGAAGCTCATGAAAAATATGGAAAATCAGTTGAAATATATCAAG
ACCCTGATGTTCTTGATACTTGGTTCTCAAGTGCTCTGTGGCCTTTCAGCACGCTTGGTT
GGCCTGATCTTTCCAAGGAGGATTATAAGCATTTTTATCCTTCAACTGTTCTGGAGACAG
GCCACGATATTTTGTTCTTCTGGGTTGCACGAATGGTCATGATGGGAATTGAGTTCACAG
GATCAGTACCATTTTCTTATGTCTATCTACATGGTCTTATCCGGGATGCTGAGGGTCGAA
AAATGTCGAAGACATTAGGGAATGTCATTGATCCCCTAGATACCATCAAAGAGTACGGGA
CAGATGCTTTGAGATTTACACTATCTTTGGGCACTGCAGGCCAGGACCTCAATCTCTCTA
CAGAAAGGTTGACGTCAAATAAGGCTTTCACAAACAAGCTGTGGAACGCAGGGAAATTTT
TGTTACAGAACTTGCCTGATAAAAATGATGTCTCTGCATGGGATGTCTTGTTGTCTAATA
AGTTCGACTCAGAAGCATCACTCCAGAAACTGCCATTGCCAGAATGCTGGGTGGTTACAG
GACTACATGAACTCATCGATAAGGTCAGCAGAAGCTATGATAAGTTTTTCTTCGGAGATG
CTGCTAGAGAAATATATGATTACTTCTGGGGGGATTTTGCTGATTGGTATATTGAAGCTA
GCAAAACACGGCTTTACCACTCGAGTGACAAGATCGCTGCTGCTACAGCCCAGAGTGTTC
TGGTGTATGTGTTTGAAAACATACTGAAGTTATTGCATCCCTTCATGCCATTCGTCACTG
AAGAATTATGGCAGGCATTTCCATACAGAAAACAAGCACTTATGGTTACTCCCTGGCCTA
CCACTGACCTTCCTAAAGATTTGAGGTCCATCAAACGGTTCCAGAATTTGCAATCATTGA
TAAGAGGAATCAGAAATGTTCGAGCAGAATATTCTGTTGAGCCAGCTAAACGGATATCAG
CTTCTGTTGTTGCTACTGCGGATGTCCTGGAATACGTATCAGTAAGTGTGCAGATCCATT
TTGTTAGTGACACTTTTTTTCTCGAATGCGCAGGAGAACTGCGCATCTTATATAAAAGAG
AGGAAGAAAAGCCATACAAAAGATGGCATCTTGCTGAGCAAGTTCCCCAAGGATCCTACA
CACAACCGTAGGACATTACAAACCGGAACCAAGACTTGACCCTACCTCGCTAAGAGCTGC
AACTAAGCCTAGGTGCTTTAGCTCTTCAGCTCCTGCCATAGCCCAGCTAGTACATTCATC
CAGGAACCTTCGAAGAATTCTAGATAATGAGGGGGACTCCCCTTCAAACACTGTTCTGTT
TCTCTGGATCCATAGACACCAAGCTCCCAGGAGGCCAGGATGATCAAGGAGTTAAGCCCC
TTTTTCATGTTCTTGGAAACCCTGAGGCTCATTCTTCTCCACCATTCTGCAAAAGACTCC
TCGTCAGCTGTAGGAGTGAGGTGTCCCAAGCCAAGAGCAGAAAGAATTTTGTGCCAAAAT
CGCCGAGCAAAGATGCAAGCAGAAAGAAGGTGCTGAATTGTCTCCTGGGCTTGATCACAC
ATGGGGCAAACATCCGGAGGGAGAAGCAGGTCCTAGCATTACTTTCAAAGCTTGACGTTC
AGAACGTACATTTTACTGAATCAGCACCAGGCGATGCAAACCAGTCGGTTCACATTGTTG
CTGATGAGGGTTTGGAGGCGTATCTACCTTTGGCTGATATGGTTGACGTGTCTGAAGAGG
TTAAGCGGCTCTCCAAGCGCCTCTCCAAGATGCAGTCGGAGTATGATGCTCTTGTTGCCC
GACTCAATTCCCCAAGTTTTGTTGAAAAGGCCCCTGAAGATATTGTTCGCGGAGTTCGTG
AAAAAGCGTCTGAGGCAGACGAGAAGATCTCTCTAACTAAAAATCGTCTCACTTTTCTGC
AATCAACCATTACCACTTAAATACAGTAATCCACGGGGACTCTACCAGGATGCCATTTTG
ATCGATGACGCAGGACAAAACTGATTGTTAATAGTTTTTGGTTGAAGGATATGATAGATT
GGCAACGAAGTTGTGCCTTGTCCAGCAGAAACACACATTCTTTCTAGTTCATATCTGTTG
TCTCTTGAAACTTAAAACATACATTCGGCTAGGCATATAATTTATATTCCTGACTTATGG
TT