Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d007876_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:2:241535851:241537578:-1 gene:Zm00001d007876 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase4 description: nine-cis-epoxycarotenoid dioxygenase4
Sequence	ATGGCGTCGTCCTCCATCTCTGCTCCAGCTCCACCGGCGGCTCCGGCGCCGGGCAGGCCC AAGAAGCAGTCCCAGCTCAACCCCAGCACCGGCAAGACCAGGACCCCGGTCCCCGCGCGG CCAATGCGCGCGGCTCCGACGCCGGCGCGCCACGAGGCGGCCGCCAAGTGGAACCCGCTC CAGCGGCTCGCCGCGGCGGCGCTCGACGCGCTGGAGGAGGGGCTCGTGGCGGGCGTCCTG GAGCGCGCGCACCCGCTGCCACGGACCGCCGACCCGGCCGTCCAGATCGCCGGCAACTAC GCGCCCGTCGGGGAGCGCCCGCCCAGCGGCGAGCTCCCGGTGTCCGGCCGCGTCCCGGCG TGCCTCGACGGCGTGTACGTCCGCAACGGCGCCAACCCGCTCCACGCGCCGCGCGCGGGG CACCACCTCTTCGACGGCGACGGCATGCTGCACGCCGTGCGGCTCCGCGGGGGCCGCGCC CAGTCCTACGCGTGCCGGTTCACGGAGACGGCGCGGCTCCGGCAGGAGCGCGCCCTCGGC AGGGCCGTCTTCCCCAAGGCCATCGGCGAGCTGCACGGCCACTCCGGCGTGGCGCGCCTG CTCCTCTTCGGGGCCCGCTCCCTCTGCGGCGTGCTCGACGCGTCGCAGGGGATCGGGGTC GCCAACGCCGGCCTGGTGTACCATAACAACCGCCTCCTCGCCATGTCGGAGGACGACCTC CCGTACCACGTGCGCGTCACCGCCGACGGCGACCTCGAGACCGCCGGGCGCTACGACTTC GGCGGCCAGCTCGACGCCGCAATGATCGCGCACCCCAAGCTGGACCCGGCCACCGGCGAG CTCTTCGCGCTCAGCTACAATGTCGTGTCCAGGCCCTTCCTCAAGTACTTCTACTTCACC GCCGACGGCCGCAAGTCCCCCGACGTCGAGATCCCCGTCGACGCGCCCACCATGATGCAC GACTTCGCCGTCACCGAGAACCACGCCATCATCCCCGACCAGCAGATCGTGTTCAAGCTC CAGGAGATGGTGCTGGGCGGCTCCCCCGTGGTGTACGACAGGAACAAGACCGCGCGGTTC GGTGTGCTGCCGAAGCGCGCCACCGACGCGTCGCGGCTGCAGTGGGTGGACGTCCCCGAC TGCTTCTGCTTCCACCTCTGGAACGCGTGGGAGGACGAGGCCACGGGCGAGATCGTGGTG ATCGGGTCCTGCATGACCCCGGCCGACGCCGTGTTCAACGAGTCCGCCGGCGAGGAGAGC TTCCGCAGCGTGCTGTCGGAGATCCGCCTGGACCCGCGCACCGGCACGTCCTCGCGGCGC GCGGTCCTGAGCGACGCCGACCAGGTGAACCTGGAGGCCGGCATGGTGAACCGGCAGCTG CTGGGCAGGAAGACGCGCTACGCCTACCTCGCCATCGCCGAGCCGTGGCCCAAGGTGTCG GGCTTCGCCAAGGTGGACCTCGAGGCCGGCACCGTGGAGAAGTTCGTCTACGGCGAGGGC CGGTACGGCGGCGAGCCCTGCTTCGTGCCGCGCCCGGACGCCCCGGCCGCGGAGGATGAC GGGTACGTGCTGTGCTACGTGCACGACGAGGGCCGCGGCGCGTCGGAAATGCTCGTCGTC AACGCCCGCGACATGCGGGCCGAGGCCGCCGTGAAGCTGCCGAGCCGCGTCCCGTACGGG TTGCACGGCACGTTCATCGCCGGCAAGGAGCTGCAGCGGCAGGCCTAG

Peptide Sequence

PEP ID	Zm00001d007876_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:2:241535851:241537578:-1 gene:Zm00001d007876 transcript:Zm00001d007876_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase4 description: nine-cis-epoxycarotenoid dioxygenase4
Sequence	MASSSISAPAPPAAPAPGRPKKQSQLNPSTGKTRTPVPARPMRAAPTPARHEAAAKWNPL QRLAAAALDALEEGLVAGVLERAHPLPRTADPAVQIAGNYAPVGERPPSGELPVSGRVPA CLDGVYVRNGANPLHAPRAGHHLFDGDGMLHAVRLRGGRAQSYACRFTETARLRQERALG RAVFPKAIGELHGHSGVARLLLFGARSLCGVLDASQGIGVANAGLVYHNNRLLAMSEDDL PYHVRVTADGDLETAGRYDFGGQLDAAMIAHPKLDPATGELFALSYNVVSRPFLKYFYFT ADGRKSPDVEIPVDAPTMMHDFAVTENHAIIPDQQIVFKLQEMVLGGSPVVYDRNKTARF GVLPKRATDASRLQWVDVPDCFCFHLWNAWEDEATGEIVVIGSCMTPADAVFNESAGEES FRSVLSEIRLDPRTGTSSRRAVLSDADQVNLEAGMVNRQLLGRKTRYAYLAIAEPWPKVS GFAKVDLEAGTVEKFVYGEGRYGGEPCFVPRPDAPAAEDDGYVLCYVHDEGRGASEMLVV NARDMRAEAAVKLPSRVPYGLHGTFIAGKELQRQA

Transcript Sequence

Transcript ID	Zm00001d007876_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:241535851:241537578:-1 gene:Zm00001d007876 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase4 description: nine-cis-epoxycarotenoid dioxygenase4
Sequence	ATGGCGTCGTCCTCCATCTCTGCTCCAGCTCCACCGGCGGCTCCGGCGCCGGGCAGGCCC AAGAAGCAGTCCCAGCTCAACCCCAGCACCGGCAAGACCAGGACCCCGGTCCCCGCGCGG CCAATGCGCGCGGCTCCGACGCCGGCGCGCCACGAGGCGGCCGCCAAGTGGAACCCGCTC CAGCGGCTCGCCGCGGCGGCGCTCGACGCGCTGGAGGAGGGGCTCGTGGCGGGCGTCCTG GAGCGCGCGCACCCGCTGCCACGGACCGCCGACCCGGCCGTCCAGATCGCCGGCAACTAC GCGCCCGTCGGGGAGCGCCCGCCCAGCGGCGAGCTCCCGGTGTCCGGCCGCGTCCCGGCG TGCCTCGACGGCGTGTACGTCCGCAACGGCGCCAACCCGCTCCACGCGCCGCGCGCGGGG CACCACCTCTTCGACGGCGACGGCATGCTGCACGCCGTGCGGCTCCGCGGGGGCCGCGCC CAGTCCTACGCGTGCCGGTTCACGGAGACGGCGCGGCTCCGGCAGGAGCGCGCCCTCGGC AGGGCCGTCTTCCCCAAGGCCATCGGCGAGCTGCACGGCCACTCCGGCGTGGCGCGCCTG CTCCTCTTCGGGGCCCGCTCCCTCTGCGGCGTGCTCGACGCGTCGCAGGGGATCGGGGTC GCCAACGCCGGCCTGGTGTACCATAACAACCGCCTCCTCGCCATGTCGGAGGACGACCTC CCGTACCACGTGCGCGTCACCGCCGACGGCGACCTCGAGACCGCCGGGCGCTACGACTTC GGCGGCCAGCTCGACGCCGCAATGATCGCGCACCCCAAGCTGGACCCGGCCACCGGCGAG CTCTTCGCGCTCAGCTACAATGTCGTGTCCAGGCCCTTCCTCAAGTACTTCTACTTCACC GCCGACGGCCGCAAGTCCCCCGACGTCGAGATCCCCGTCGACGCGCCCACCATGATGCAC GACTTCGCCGTCACCGAGAACCACGCCATCATCCCCGACCAGCAGATCGTGTTCAAGCTC CAGGAGATGGTGCTGGGCGGCTCCCCCGTGGTGTACGACAGGAACAAGACCGCGCGGTTC GGTGTGCTGCCGAAGCGCGCCACCGACGCGTCGCGGCTGCAGTGGGTGGACGTCCCCGAC TGCTTCTGCTTCCACCTCTGGAACGCGTGGGAGGACGAGGCCACGGGCGAGATCGTGGTG ATCGGGTCCTGCATGACCCCGGCCGACGCCGTGTTCAACGAGTCCGCCGGCGAGGAGAGC TTCCGCAGCGTGCTGTCGGAGATCCGCCTGGACCCGCGCACCGGCACGTCCTCGCGGCGC GCGGTCCTGAGCGACGCCGACCAGGTGAACCTGGAGGCCGGCATGGTGAACCGGCAGCTG CTGGGCAGGAAGACGCGCTACGCCTACCTCGCCATCGCCGAGCCGTGGCCCAAGGTGTCG GGCTTCGCCAAGGTGGACCTCGAGGCCGGCACCGTGGAGAAGTTCGTCTACGGCGAGGGC CGGTACGGCGGCGAGCCCTGCTTCGTGCCGCGCCCGGACGCCCCGGCCGCGGAGGATGAC GGGTACGTGCTGTGCTACGTGCACGACGAGGGCCGCGGCGCGTCGGAAATGCTCGTCGTC AACGCCCGCGACATGCGGGCCGAGGCCGCCGTGAAGCTGCCGAGCCGCGTCCCGTACGGG TTGCACGGCACGTTCATCGCCGGCAAGGAGCTGCAGCGGCAGGCCTAG