Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007871_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:2:241399341:241407505:1 gene:Zm00001d007871 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGATGAAGTTGGATGGAAATATCTCTCCAGTATGTGTAAATATTATGCGTCTAGCCCC
CACTTCGCCCCAAAAATCCCAATCCTGCTTGCAGATCCTTATGTCCCAATTTTCACTTTT
AACAACAGAAATGAAGGCTCACTTGGTGGAATAGATGCACTACTTGGCTGTCCTTTGCAC
CTTCCCTCTACCAAGCACTTGGATGGAGCTAACTGGGGAAACCTGTCAGGATTGCAGAAA
AAAACAGTGTGCTATTCCCTATACTATGCAATAAACTGGATCAGGGAGTTGCTCAATGCT
TTCGGCACACAGGTTGAAAGTAGGGTTGATAATGTTTCACAGAAAGCAAGGAACGAGACA
GCAGTAAAACTTCTGAAGCGTCTAAGAAATCTGATATTACTTGAAGGCTTGCTGAATGCA
TTTCTCAAAGATTATCCATTATCTTTACCTGAGTTGCGATATCTTGGGGATTGCTCTGGA
TCAGCAAGCACCAGCAAATTCAACATTCCAAAGAACATGGGAGAGGAGAGCATAAATGGT
GCTTCCAGCAAAAGACAGAAGGGTTGCAAGGGCAAAGTCTCAGAAAAAGTGAATCCTGAT
GATAAACTCAAGCAACCTACAATACTGGATGCTTTCAAAAGAGCAGGAGTAACAGTCAGT
CAAGCAACAAATAAAGCTTCTTCACAACCATCATCAAGTGGAATGATGTCAAAGGATATC
GAACAAGATGCTACTGATCCTGGTGAACTTGGGCTTATAGATTTAATGGCAGCACCAGTT
AAACTAGATATGCAAAGATACAAATTCAGAACTATCCGTGCAACGTGCTTGTCTTTGTTG
AACTACTCAGAGTGTCAAGGTTCATCTTCTTACCTTCAAACTGAGTTACCAACATATCTA
TATCTTCTCCGTGATCTGCATAACAAATTAGATAATCTGAATCCTTCAATCAAGCCTTTT
CTTAGTACTTCTAAAGCAAAATATACTCCTACTCATTGCCATAAGAGTACACAAGATTTT
CTTGACAAAATCCAGCCACTATTCTTAGTTTTAAGGAAGCATCTGGATGGAGCAGTTTCA
ATGATCAAAGATGAATCAGAGAGCTGTTCAGATGACTGGAGTTCACATTCATCTTCTGCT
GGCAACCCAGACATACCATATGTGGTTGTCTCCAAGTCATCAATTGTGACTGCTGTATGC
AAGGAGATTCTTGGCTGCTACAGGAAGTTACTTGGCATTCCTGATCTGTTGAATCAACCA
AACATGTCAATTCTGAAGCAACTTTTGCAGACTTTACAGCCAACTGAAAATTTTGATGAT
GTTCTTTCCGAGTTCCAACCATCTCTTGCTCCTTGCAATGTTGATTACCTGTATTGTGGA
GCATGTAAAATATTGGAGGATATTATGGATTCAGTGTCCTCATTTTCATACCTTCTGTCT
TCTAATGTGTTAATTACTATACAATCAATTGTAAATTCTGTTGTTGTGTTGTTGGACAAA
TCTGGGGAACCAAATGGGAAAAATATACACATGGGATGCTCCAAAGCAATCATTCCCTTT
CTGCGAAAGCGTCTTGGATACTCAGCTCATAAGCTGCTCAGTGCTGATTTCCCTAGCGAA
GATGCTGGAAAAGGATGGCAGAGTAAAGGTGATCTTATACAGAAGATATTGCAAATATAC
CTTAGGAATAGTGACTCTACTTCAGATCTACTTGCTGAGATAGGTCGTGAATTGCCTAAG
GAACCTTCGCTCAAAACAAAAGATAACCAAGATGTATCGTATGGTTTTCCAACATTGTGT
TCCTCCACTATTACCTCTTGGTACCGTGTGCTTCACGAGGAGAACACAGGGAGTTTAAAC
AAGACGATCAAACAAGCACTGAAGGCTAGAGGATCAGTTGATACTATTCTTCAAGAGATT
CAGAAATCAGTGGATGCATTTGTCTCTCTAATAGGAATGTGCAAGTCCCACGAAAAGGTT
TCTATGCATGCAATGGCAGTTAAACATGGGGGGAAATTTATTGACACATTTCTGAAAGCC
TTCAACTTTCTAGAGAGACATTTCGAGCAACATAATGACACCATAGTTAAAATGCTAAAA
CAACTCCAGAAAGGAACAAGAATAATCCAATCCATATGTTCAGATGCTAAGGGTAACAAG
CGGACAATGATCACAAGCAAAGTACCTCCTGCAAAGAGATCCATGGAGCGGTTCTTGTTC
CAGGTCAAGGCGCTGCTACACAGCTGCTCCGCCGAGAAGGAATTTCAGATGGGCAATTTG
AAGCACAAGGACTTGCAAGGCCATGTGGTGAGCTCTCAGGCGTATGGGAACGTGGATGAG
GAAGATGAGGAGCAGACGGAGGTCGACTCCGACCTTCCAGCTGATGAGCACGATAATGGC
AATGCCATGGAGGAGGATGCTGTGGAAGGTAGCAACGAGACGCCGATGGAGGAGGAAGAG
GAATAG

Peptide Sequence

PEP ID

Zm00001d007871_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:2:241399341:241407505:1 gene:Zm00001d007871 transcript:Zm00001d007871_T009 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MDEVGWKYLSSMCKYYASSPHFAPKIPILLADPYVPIFTFNNRNEGSLGGIDALLGCPLH
LPSTKHLDGANWGNLSGLQKKTVCYSLYYAINWIRELLNAFGTQVESRVDNVSQKARNET
AVKLLKRLRNLILLEGLLNAFLKDYPLSLPELRYLGDCSGSASTSKFNIPKNMGEESING
ASSKRQKGCKGKVSEKVNPDDKLKQPTILDAFKRAGVTVSQATNKASSQPSSSGMMSKDI
EQDATDPGELGLIDLMAAPVKLDMQRYKFRTIRATCLSLLNYSECQGSSSYLQTELPTYL
YLLRDLHNKLDNLNPSIKPFLSTSKAKYTPTHCHKSTQDFLDKIQPLFLVLRKHLDGAVS
MIKDESESCSDDWSSHSSSAGNPDIPYVVVSKSSIVTAVCKEILGCYRKLLGIPDLLNQP
NMSILKQLLQTLQPTENFDDVLSEFQPSLAPCNVDYLYCGACKILEDIMDSVSSFSYLLS
SNVLITIQSIVNSVVVLLDKSGEPNGKNIHMGCSKAIIPFLRKRLGYSAHKLLSADFPSE
DAGKGWQSKGDLIQKILQIYLRNSDSTSDLLAEIGRELPKEPSLKTKDNQDVSYGFPTLC
SSTITSWYRVLHEENTGSLNKTIKQALKARGSVDTILQEIQKSVDAFVSLIGMCKSHEKV
SMHAMAVKHGGKFIDTFLKAFNFLERHFEQHNDTIVKMLKQLQKGTRIIQSICSDAKGNK
RTMITSKVPPAKRSMERFLFQVKALLHSCSAEKEFQMGNLKHKDLQGHVVSSQAYGNVDE
EDEEQTEVDSDLPADEHDNGNAMEEDAVEGSNETPMEEEEE

Transcript Sequence

Transcript ID

Zm00001d007871_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:241399341:241407505:1 gene:Zm00001d007871 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATCCTGCCCTAAGTCCATAAGGCTTAATTAGTATATAAGTCCATCTCATTTATGCCGCAC
ACATGCTCGTCACTTGCAGTTGCAGCAGCATCATCTGTAGCAAGAGCTTGGCCATAGTCA
TCTTCAACATGTAGATCATCAAGAGCAACAAAGTCAATTTCAGCTTCTTTGTCTTCTCCT
AATCCTTGTTGTTCTTGTTCTGAAATTATGGTTGTGGTGGATGTTGAAGCAGCAGCTACA
ACACCATTTCAACGAGTATAGATCCTGCTCATCCTAGGAAAATTACGGTTCTGTAGTGAT
GTTGTTGCACCAATGGCTTCATGAACACGAGACCAGAAAAGATCATGATCTTCAGGATGA
TCTCTTCTTCATTGTTAGTTGCCATTTGAACCTATTGGAACTCTTCTAAGATCAAAGGGT
TTAGATTTTTTTCTTCCACATGTCTCTTTTTGAGCCTTTCAATTATCTTGTATCAGATAT
AAAGCAAATCATTCAACCTTTGGTTCTCTAATCTGTTTCTTTTATTTGTATAGATCTAAA
AAAGAAACCACCACTTACTTACTAACACCCCCTTAGGCCGTGTCCAGCAGATCGTGTATA
ACTGTATATGGACGTGTAAAACATTGTTTTGCACTGTAGATAACACTGTTTGCAGAGTGG
AGTTTGAAATAGTGGATGTGATAGGGGAGTTGCTGGAGATAGCCTTAGTATACCATATAT
GCGCTACACATGCTGAAATTAATGATAACATGTTAGGAATGCATATACAGTACATCAAAA
TAAAAGAACTGCATGTACTGCATCAACCGTGTTTTGCATTCATGAAATCCTAATGCTAAT
TTTATTTGGCTGGTTTGGTAGCAACCAAATTGTGAGGAGGCCCTAGAATTGCTGAAGATG
TCTGTCAACTCATGCAAATTTGTGACATTACTCTTGATTTTTCTATATGATGAATTAGCT
GCTTTGCTGGATAGCAAAGTTATCCACTCTTCAATTCATGACTGGGTAGGAGAGCATGTT
GCAGAGTTATTTGAGACACCTTTTCTTGCCGATCTTGAAAATGGTGAACTACCAGAGAAA
TATCTATGTGATGGCATAGAAGGAGAATTATGGATGAAGTTGGATGGAAATATCTCTCCA
GTATGTGTAAATATTATGCGTCTAGCCCCCACTTCGCCCCAAAAATCCCAATCCTGCTTG
CAGATCCTTATGTCCCAATTTTCACTTTTAACAACAGAAATGAAGGCTCACTTGGTGGAA
TAGATGCACTACTTGGCTGTCCTTTGCACCTTCCCTCTACCAAGCACTTGGATGGAGCTA
ACTGGGGAAACCTGTCAGGATTGCAGAAAAAAACAGTGTGCTATTCCCTATACTATGCAA
TAAACTGGATCAGGGAGTTGCTCAATGCTTTCGGCACACAGGTTGAAAGTAGGGTTGATA
ATGTTTCACAGAAAGCAAGGAACGAGACAGCAGTAAAACTTCTGAAGCGTCTAAGAAATC
TGATATTACTTGAAGGCTTGCTGAATGCATTTCTCAAAGATTATCCATTATCTTTACCTG
AGTTGCGATATCTTGGGGATTGCTCTGGATCAGCAAGCACCAGCAAATTCAACATTCCAA
AGAACATGGGAGAGGAGAGCATAAATGGTGCTTCCAGCAAAAGACAGAAGGGTTGCAAGG
GCAAAGTCTCAGAAAAAGTGAATCCTGATGATAAACTCAAGCAACCTACAATACTGGATG
CTTTCAAAAGAGCAGGAGTAACAGTCAGTCAAGCAACAAATAAAGCTTCTTCACAACCAT
CATCAAGTGGAATGATGTCAAAGGATATCGAACAAGATGCTACTGATCCTGGTGAACTTG
GGCTTATAGATTTAATGGCAGCACCAGTTAAACTAGATATGCAAAGATACAAATTCAGAA
CTATCCGTGCAACGTGCTTGTCTTTGTTGAACTACTCAGAGTGTCAAGGTTCATCTTCTT
ACCTTCAAACTGAGTTACCAACATATCTATATCTTCTCCGTGATCTGCATAACAAATTAG
ATAATCTGAATCCTTCAATCAAGCCTTTTCTTAGTACTTCTAAAGCAAAATATACTCCTA
CTCATTGCCATAAGAGTACACAAGATTTTCTTGACAAAATCCAGCCACTATTCTTAGTTT
TAAGGAAGCATCTGGATGGAGCAGTTTCAATGATCAAAGATGAATCAGAGAGCTGTTCAG
ATGACTGGAGTTCACATTCATCTTCTGCTGGCAACCCAGACATACCATATGTGGTTGTCT
CCAAGTCATCAATTGTGACTGCTGTATGCAAGGAGATTCTTGGCTGCTACAGGAAGTTAC
TTGGCATTCCTGATCTGTTGAATCAACCAAACATGTCAATTCTGAAGCAACTTTTGCAGA
CTTTACAGCCAACTGAAAATTTTGATGATGTTCTTTCCGAGTTCCAACCATCTCTTGCTC
CTTGCAATGTTGATTACCTGTATTGTGGAGCATGTAAAATATTGGAGGATATTATGGATT
CAGTGTCCTCATTTTCATACCTTCTGTCTTCTAATGTGTTAATTACTATACAATCAATTG
TAAATTCTGTTGTTGTGTTGTTGGACAAATCTGGGGAACCAAATGGGAAAAATATACACA
TGGGATGCTCCAAAGCAATCATTCCCTTTCTGCGAAAGCGTCTTGGATACTCAGCTCATA
AGCTGCTCAGTGCTGATTTCCCTAGCGAAGATGCTGGAAAAGGATGGCAGAGTAAAGGTG
ATCTTATACAGAAGATATTGCAAATATACCTTAGGAATAGTGACTCTACTTCAGATCTAC
TTGCTGAGATAGGTCGTGAATTGCCTAAGGAACCTTCGCTCAAAACAAAAGATAACCAAG
ATGTATCGTATGGTTTTCCAACATTGTGTTCCTCCACTATTACCTCTTGGTACCGTGTGC
TTCACGAGGAGAACACAGGGAGTTTAAACAAGACGATCAAACAAGCACTGAAGGCTAGAG
GATCAGTTGATACTATTCTTCAAGAGATTCAGAAATCAGTGGATGCATTTGTCTCTCTAA
TAGGAATGTGCAAGTCCCACGAAAAGGTTTCTATGCATGCAATGGCAGTTAAACATGGGG
GGAAATTTATTGACACATTTCTGAAAGCCTTCAACTTTCTAGAGAGACATTTCGAGCAAC
ATAATGACACCATAGTTAAAATGCTAAAACAACTCCAGAAAGGAACAAGAATAATCCAAT
CCATATGTTCAGATGCTAAGGGTAACAAGCGGACAATGATCACAAGCAAAGTACCTCCTG
CAAAGAGATCCATGGAGCGGTTCTTGTTCCAGGTCAAGGCGCTGCTACACAGCTGCTCCG
CCGAGAAGGAATTTCAGATGGGCAATTTGAAGCACAAGGACTTGCAAGGCCATGTGGTGA
GCTCTCAGGCGTATGGGAACGTGGATGAGGAAGATGAGGAGCAGACGGAGGTCGACTCCG
ACCTTCCAGCTGATGAGCACGATAATGGCAATGCCATGGAGGAGGATGCTGTGGAAGGTA
GCAACGAGACGCCGATGGAGGAGGAAGAGGAATAGTGGCATAGGTACCAATCTGTACATC
TCTTTCTCTCTAAGCCGGCCAAAAATCTGTCCCAAAAATTAACAGTTTTGTGTGTGCATT
TAGTGTAGAAAAAAAGATAGGATCCCCACCAGAATCTAGGTTGCAACGTCACTTGTAAAT
ATGGAAGTCTGAATAAGTAGTTTATATATTGCTAGCAGTGGTCGTT