Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007865_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:241256310:241261093:-1 gene:Zm00001d007865 gene_biotype:protein_coding transcript_biotype:protein_coding description:CSC1-like protein ERD4
Sequence

ATGGACCTCACGTCGTTCATCACGTCCGTGCTCACGTCGTTCGTCATCTTCGTGGCGCTG
GTGCTGCTGTTCACGTGGCTGTCGCGCCGCCCGGGGAACGCGCCGGTCTACTACCCCAAC
CTCCTCCTGCGCGGGCTCGACCCGTGGGCGGGCCGCGGCCGCGGCACGCGCAGCCCCGTG
GGCTGGCTCCGCGACGCCATCTCCGCCTCGGAGCCGGACGTCGTCGCCGCCGGCGGGGTC
GACGCCGCCGTCTACCTCGTCTTCCTCTCCTCTGTGCTGTCCATCTTGGTGTACTCTGGG
ATCGTGCTGCTTCCGGTCCTCCTCCCAGTTGCTGCAACGGGTGGTGCCCTAAGTACCATC
CCTATCCCTACCAACAAATCAGCCCAATCGGCTCAGAACTTCTCGTCAATAGAAAGGCTC
GGAATGGGCAATGTTCCTGAGAAAAGTATGAGGCTGTGGGCATTTCTGTTGTCAGTCTAT
TGGGTTTCCTTCGTCACCTATTTCGTCCTATGGAAATCCTACAAGCACGTGTCGAATTTG
AGAGCTACTGCAAGATCAGCACCAGATGTTAAACCAGAGGAGTTTGCGGTGTTGGTGAGA
GATATCCCTAGACCGTCTCCAGATGAAACTATAAAGGACTCTGTAGACTCATATTTTCGA
GCCCTTCACCCAAATACTTTCTACAGATCAATGGTTGTGACAGATCACACAAAGGCTGAT
AAGATATACCAAGAGATCGAAGGTCACAAGCAGAAAATTGCTCGCGCCGAAGTCGTATAT
GCAAACTCGAAAACTGAAAGTAATACTGAGGGCACAAGGCCTACTCATAGGACTGGATTC
CTTGGTCTTATTGGTACAAAGGTTGACACCATTGAATACTGTAGTGAGCAGATTAAGGAA
TTACTGCCCAAACTGGAGGCTGAACAGAAGACTACCCTTCATGAGAAACAGCAGCGGGCT
GCCATTGTCGTCTTCAATAGTAGGTCTGCCGCAGCTTTCGCATCTCAGACTCTCCATGCT
CAAGTGTATGATAAATGGACAGTTATGGAAGCTCCTGAACCACGCCAGATAATATGGTCC
AACCTTCCAAGGAAACTATATGATAGGCAAATCAGACAATGTGTGGTTTATGGCATTGTC
TTTCTCATAGTTGTGTTCTATATAGTTCCTCTCACTGCTATCGCTGCTGTTACAACCCTG
GAAAACCTGGAGGCGAAGCTGCCCTTCCTGAAGCCAGTGGTGGAGCAACCAGCAATCAAG
ACGGTCTTGGAGGCCTACCTTCCCCAGATTGCACTCATTGTGTTCCTCGCATTGCTACCT
ACTCTTCTTATGTTTCTCTCGAAACAAGAGGGGATCCCTTCGCAGGGCCATGCAGTCAGG
GCGGCATCGGGAAAATATTTCTATTTCATCGTTTTCAACGTCTTCCTTTGCTATACGCTT
GGAAGCACATTGTTCAAATCTTTGACGACCATTATCAATCACCCTGCTGAGATTGTGAAT
ATGCTTGCCAAGAGCCTGCCTGGAAGCGCAACGTTCTTCCTCACGTTTGTCGCGCTGAAG
TTCTTGGTTGGCTATGGCCTTGAGCTCTCTCGCCTGGTTCCTCTCATCATTTTCCACCTG
AAAAGGAAGTACCTATGCAAGACGGAGGAAGAAGTGAGAGCGGCATGGGCTCCAGTGGAT
CTGGGATATAACACCAGGATACCAAATGACATGCTCATCGCAACAGTTGTTCTGTGCTAC
TCAGTCATTGCGCCTTTGATTATTCCGTTCGGTGTCGCATACTTTGCCCTCGGATGGCTT
ATAGCAAGAAATCAGATCCTGAGAGTTTACGTTCCTAGCTACGAGAGCTACGGACGAATG
TGGCCACACATGCACACGAGGATCATCGCGGCTCTGATGGTTTACCAGACCACCATGATC
GGCTTCATCTCCCTGAAGAAGTTCGCCTACGCGTCCGTTCTCGTGCCCCTGCTTCCAGCC
AGCATAATCTTCGCCTACGTCTGCCACATGCGCTTCTACCCGGCGTTCGCCAAGACTCCC
CTGGAGGTGGTGGTGCGGCACGACCTGAAGGAGACTCCGAACATGGAGGCCATCTACACC
GCGTACATACCGCCGTGCTTGAAGCCTGATAAGCTCGAAGATCTGGACGCTTTCGAGGAC
GCCCAGTCGCGCGCCACCTCCAGAGTCCCGTCTATTTAG

Peptide Sequence

PEP ID

Zm00001d007865_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:241256310:241261093:-1 gene:Zm00001d007865 transcript:Zm00001d007865_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:CSC1-like protein ERD4
Sequence

MDLTSFITSVLTSFVIFVALVLLFTWLSRRPGNAPVYYPNLLLRGLDPWAGRGRGTRSPV
GWLRDAISASEPDVVAAGGVDAAVYLVFLSSVLSILVYSGIVLLPVLLPVAATGGALSTI
PIPTNKSAQSAQNFSSIERLGMGNVPEKSMRLWAFLLSVYWVSFVTYFVLWKSYKHVSNL
RATARSAPDVKPEEFAVLVRDIPRPSPDETIKDSVDSYFRALHPNTFYRSMVVTDHTKAD
KIYQEIEGHKQKIARAEVVYANSKTESNTEGTRPTHRTGFLGLIGTKVDTIEYCSEQIKE
LLPKLEAEQKTTLHEKQQRAAIVVFNSRSAAAFASQTLHAQVYDKWTVMEAPEPRQIIWS
NLPRKLYDRQIRQCVVYGIVFLIVVFYIVPLTAIAAVTTLENLEAKLPFLKPVVEQPAIK
TVLEAYLPQIALIVFLALLPTLLMFLSKQEGIPSQGHAVRAASGKYFYFIVFNVFLCYTL
GSTLFKSLTTIINHPAEIVNMLAKSLPGSATFFLTFVALKFLVGYGLELSRLVPLIIFHL
KRKYLCKTEEEVRAAWAPVDLGYNTRIPNDMLIATVVLCYSVIAPLIIPFGVAYFALGWL
IARNQILRVYVPSYESYGRMWPHMHTRIIAALMVYQTTMIGFISLKKFAYASVLVPLLPA
SIIFAYVCHMRFYPAFAKTPLEVVVRHDLKETPNMEAIYTAYIPPCLKPDKLEDLDAFED
AQSRATSRVPSI

Transcript Sequence

Transcript ID

Zm00001d007865_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:241256310:241261093:-1 gene:Zm00001d007865 gene_biotype:protein_coding transcript_biotype:protein_coding description:CSC1-like protein ERD4
Sequence

CTTTCTCTCTGTGCCCAAGTGGCGGCAACCCTCCACGGACAACGGCTCGCTCACCAGTCA
CCAGTCACCGCCACGGCACCACCAAGCATCCAATGCTTCCCCTCCCCCTCCCCCTCCCGC
CTCCCTTCTTAACCCCGATTCCCACCACTAACCGCTCCCGCCACCACTAAACCCCGCCGG
TAACCACCAGCCTCCGGGTCTTGTCAAGAGCCCAGAGTGCCTGCCCGCCCGCCCGCCTGC
CTCAAGGAAAACGAACAGCACCAGAACCGCGCGCGCGCGCGGGGGCGGGCGCCGGGATGG
ACCTCACGTCGTTCATCACGTCCGTGCTCACGTCGTTCGTCATCTTCGTGGCGCTGGTGC
TGCTGTTCACGTGGCTGTCGCGCCGCCCGGGGAACGCGCCGGTCTACTACCCCAACCTCC
TCCTGCGCGGGCTCGACCCGTGGGCGGGCCGCGGCCGCGGCACGCGCAGCCCCGTGGGCT
GGCTCCGCGACGCCATCTCCGCCTCGGAGCCGGACGTCGTCGCCGCCGGCGGGGTCGACG
CCGCCGTCTACCTCGTCTTCCTCTCCTCTGTGCTGTCCATCTTGGTGTACTCTGGGATCG
TGCTGCTTCCGGTCCTCCTCCCAGTTGCTGCAACGGGTGGTGCCCTAAGTACCATCCCTA
TCCCTACCAACAAATCAGCCCAATCGGCTCAGAACTTCTCGTCAATAGAAAGGCTCGGAA
TGGGCAATGTTCCTGAGAAAAGTATGAGGCTGTGGGCATTTCTGTTGTCAGTCTATTGGG
TTTCCTTCGTCACCTATTTCGTCCTATGGAAATCCTACAAGCACGTGTCGAATTTGAGAG
CTACTGCAAGATCAGCACCAGATGTTAAACCAGAGGAGTTTGCGGTGTTGGTGAGAGATA
TCCCTAGACCGTCTCCAGATGAAACTATAAAGGACTCTGTAGACTCATATTTTCGAGCCC
TTCACCCAAATACTTTCTACAGATCAATGGTTGTGACAGATCACACAAAGGCTGATAAGA
TATACCAAGAGATCGAAGGTCACAAGCAGAAAATTGCTCGCGCCGAAGTCGTATATGCAA
ACTCGAAAACTGAAAGTAATACTGAGGGCACAAGGCCTACTCATAGGACTGGATTCCTTG
GTCTTATTGGTACAAAGGTTGACACCATTGAATACTGTAGTGAGCAGATTAAGGAATTAC
TGCCCAAACTGGAGGCTGAACAGAAGACTACCCTTCATGAGAAACAGCAGCGGGCTGCCA
TTGTCGTCTTCAATAGTAGGTCTGCCGCAGCTTTCGCATCTCAGACTCTCCATGCTCAAG
TGTATGATAAATGGACAGTTATGGAAGCTCCTGAACCACGCCAGATAATATGGTCCAACC
TTCCAAGGAAACTATATGATAGGCAAATCAGACAATGTGTGGTTTATGGCATTGTCTTTC
TCATAGTTGTGTTCTATATAGTTCCTCTCACTGCTATCGCTGCTGTTACAACCCTGGAAA
ACCTGGAGGCGAAGCTGCCCTTCCTGAAGCCAGTGGTGGAGCAACCAGCAATCAAGACGG
TCTTGGAGGCCTACCTTCCCCAGATTGCACTCATTGTGTTCCTCGCATTGCTACCTACTC
TTCTTATGTTTCTCTCGAAACAAGAGGGGATCCCTTCGCAGGGCCATGCAGTCAGGGCGG
CATCGGGAAAATATTTCTATTTCATCGTTTTCAACGTCTTCCTTTGCTATACGCTTGGAA
GCACATTGTTCAAATCTTTGACGACCATTATCAATCACCCTGCTGAGATTGTGAATATGC
TTGCCAAGAGCCTGCCTGGAAGCGCAACGTTCTTCCTCACGTTTGTCGCGCTGAAGTTCT
TGGTTGGCTATGGCCTTGAGCTCTCTCGCCTGGTTCCTCTCATCATTTTCCACCTGAAAA
GGAAGTACCTATGCAAGACGGAGGAAGAAGTGAGAGCGGCATGGGCTCCAGTGGATCTGG
GATATAACACCAGGATACCAAATGACATGCTCATCGCAACAGTTGTTCTGTGCTACTCAG
TCATTGCGCCTTTGATTATTCCGTTCGGTGTCGCATACTTTGCCCTCGGATGGCTTATAG
CAAGAAATCAGATCCTGAGAGTTTACGTTCCTAGCTACGAGAGCTACGGACGAATGTGGC
CACACATGCACACGAGGATCATCGCGGCTCTGATGGTTTACCAGACCACCATGATCGGCT
TCATCTCCCTGAAGAAGTTCGCCTACGCGTCCGTTCTCGTGCCCCTGCTTCCAGCCAGCA
TAATCTTCGCCTACGTCTGCCACATGCGCTTCTACCCGGCGTTCGCCAAGACTCCCCTGG
AGGTGGTGGTGCGGCACGACCTGAAGGAGACTCCGAACATGGAGGCCATCTACACCGCGT
ACATACCGCCGTGCTTGAAGCCTGATAAGCTCGAAGATCTGGACGCTTTCGAGGACGCCC
AGTCGCGCGCCACCTCCAGAGTCCCGTCTATTTAGCTGTGCACATCGTTGACTTCCGCGG
AAGACTTGAAGAAATTCTGTTCACTTGTCATTACATTCGTGTGGGATTTCTGATGGATTT
CAATGCTTCCACGTTGAACCCTCTGGACTTGTTTCAGGATAGGAATCTGATGTGAAGAAT
GTACATATGCTCGATCTGTGTGTCTGCTGAGCGTGTGTGGATGTGGACTGCTGTAGGTAG
GTAGATGCTGTGGATATTGGAGGGTTCTAAGTTGTCTTCATTTCCATCCATCCATGCGCG
TGTGTTTACTGCAGACTGTCAGCCGTGTTGCTGTGTTGTCGGACGGTCGTTCCAGAGCCA
AACCTTAAAGTCAATCGAAATAAATATAGTCTGATTTGAAAAATTAATGAACCAAT