Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007849_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:2:240878072:240881972:1 gene:Zm00001d007849 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pleckstrin homology (PH) domain-containing protein
Sequence

ATGGCCTCGAACAGGAGCAGCAGCACGGTTGTGGGCGAGATGCAGAGCAGATTGGACCGG
GTGCGGCGCCAGCTCTCCTCCACCTCCACCCGCCACCTCCTCCAGGGCCCTCTCTTGAAG
CGGTCCGACACGCTAAGAAAGTGGAATGAGCGCTGGGTCATCCTTGATCCAGCAACTGGA
AAGATAGAATACAAGGTCAATAGGAGTGACAAAGATGTTAGGGGAGTAGTCGTGTTCGAT
TCAACAAGCACAGTGACTTTGTCGCCTACGAACTTTCATGGACTGGCAAAATACGATGGA
TGCTGTTTCTATATTGGAACTCCACAGAAAAAGGAATACTTTCTTTGTGCAGAAACTCCC
AGCGCTGCAAGAGCATGGGTATCCACTTTACATGCGACTCAGTTGGTGCTACAGGCTCAT
AAGGAGGCCGTGAATTCATTGGGTGAGAATGGTCCTGCAAAATTGGGAACAGTTGCAACT
GTTGTGGCTGTAGCCAATGCCACTGCAATTGAAGCAACAAAGGAGGTAGAAGCCGCAATG
AAGATTTCCCTACGGGCAGCTTTGGGCTCAACTACACATAAACTTACCAAAGGTCAATTA
GATGATCTCACAATAATGATGGAGACCCTTCGAGTTAAAGACGACGAACTACACCAATTA
TTGCAGGATATTCGTGCACGCGATTCTACCATCAATGAAATTGCGGATAAATTACAGGAG
ACTGCAGAAGCAGCTGAAACAGCTGCTTCTGCAGCACGTTCAATTGATGAAGAGAGAAGA
TTTTTTACGTTAGAACTTGAACGGCTGAAACAAGACCACGAGAAACAAGTTGAAGCATCT
TTGCTTAGGTTAAGGGAATCGGAGGAGAAAGCAAAGCTTCTTGTTGAAGAGAGAGATCGC
TTGCTTACAGAGAGAGATTCCGCTCTTCAAGAAGCTCAGATGTGGCGCTCGGAGCTAGGA
AAAGCTAGAGGAAACGCTGTAATTCTAGAAGCGGCTGTTGTCAGAGCCGAAGAGAAAGCT
AGGGTCTCAGCAGCAGATGCTGACATCCGCATAAAAGAAGCCATGAACCGACTTGAGTCT
GCCACCAAAGAAAAGGAGGATCTCCTAGCCCTTGTGGATGCTCTACAATCCCAAATACAA
AGGTCTGCCGTCCACAATTCTATCCGACTCACTTCTGTTTCCATCCAGTCGGAAGTTTCT
CGAAACCGGATCCTTCTAGAGCCAGCTTGA

Peptide Sequence

PEP ID

Zm00001d007849_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:2:240878072:240881972:1 gene:Zm00001d007849 transcript:Zm00001d007849_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pleckstrin homology (PH) domain-containing protein
Sequence

MASNRSSSTVVGEMQSRLDRVRRQLSSTSTRHLLQGPLLKRSDTLRKWNERWVILDPATG
KIEYKVNRSDKDVRGVVVFDSTSTVTLSPTNFHGLAKYDGCCFYIGTPQKKEYFLCAETP
SAARAWVSTLHATQLVLQAHKEAVNSLGENGPAKLGTVATVVAVANATAIEATKEVEAAM
KISLRAALGSTTHKLTKGQLDDLTIMMETLRVKDDELHQLLQDIRARDSTINEIADKLQE
TAEAAETAASAARSIDEERRFFTLELERLKQDHEKQVEASLLRLRESEEKAKLLVEERDR
LLTERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADIRIKEAMNRLES
ATKEKEDLLALVDALQSQIQRSAVHNSIRLTSVSIQSEVSRNRILLEPA

Transcript Sequence

Transcript ID

Zm00001d007849_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:240878072:240881972:1 gene:Zm00001d007849 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pleckstrin homology (PH) domain-containing protein
Sequence

ACGCACGAAACGAGCTGTCGGTCGTCGGTCTTGGTCTGATTCCTCTTCTTCCGCGCCGCC
TGTCCGGCCGGCAGCGGCAGCCATGGCCTCGAACAGGAGCAGCAGCACGGTTGTGGGCGA
GATGCAGAGCAGATTGGACCGGGTGCGGCGCCAGCTCTCCTCCACCTCCACCCGCCACCT
CCTCCAGGGCCCTCTCTTGAAGCGGTCCGACACGCTAAGAAAGTGGAATGAGCGCTGGGT
CATCCTTGATCCAGCAACTGGAAAGATAGAATACAAGGTCAATAGGAGTGACAAAGATGT
TAGGGGAGTAGTCGTGTTCGATTCAACAAGCACAGTGACTTTGTCGCCTACGAACTTTCA
TGGACTGGCAAAATACGATGGATGCTGTTTCTATATTGGAACTCCACAGAAAAAGGAATA
CTTTCTTTGTGCAGAAACTCCCAGCGCTGCAAGAGCATGGGTATCCACTTTACATGCGAC
TCAGTTGGTGCTACAGGCTCATAAGGAGGCCGTGAATTCATTGGGTGAGAATGGTCCTGC
AAAATTGGGAACAGTTGCAACTGTTGTGGCTGTAGCCAATGCCACTGCAATTGAAGCAAC
AAAGGAGGTAGAAGCCGCAATGAAGATTTCCCTACGGGCAGCTTTGGGCTCAACTACACA
TAAACTTACCAAAGGTCAATTAGATGATCTCACAATAATGATGGAGACCCTTCGAGTTAA
AGACGACGAACTACACCAATTATTGCAGGATATTCGTGCACGCGATTCTACCATCAATGA
AATTGCGGATAAATTACAGGAGACTGCAGAAGCAGCTGAAACAGCTGCTTCTGCAGCACG
TTCAATTGATGAAGAGAGAAGATTTTTTACGTTAGAACTTGAACGGCTGAAACAAGACCA
CGAGAAACAAGTTGAAGCATCTTTGCTTAGGTTAAGGGAATCGGAGGAGAAAGCAAAGCT
TCTTGTTGAAGAGAGAGATCGCTTGCTTACAGAGAGAGATTCCGCTCTTCAAGAAGCTCA
GATGTGGCGCTCGGAGCTAGGAAAAGCTAGAGGAAACGCTGTAATTCTAGAAGCGGCTGT
TGTCAGAGCCGAAGAGAAAGCTAGGGTCTCAGCAGCAGATGCTGACATCCGCATAAAAGA
AGCCATGAACCGACTTGAGTCTGCCACCAAAGAAAAGGAGGATCTCCTAGCCCTTGTGGA
TGCTCTACAATCCCAAATACAAAGGTCTGCCGTCCACAATTCTATCCGACTCACTTCTGT
TTCCATCCAGTCGGAAGTTTCTCGAAACCGGATCCTTCTAGAGCCAGCTTGATGAGGGAC
ATATTTTTTCAGGCAAGAGACTAGCACGATACAGGTCTGCGAAGAGAGCTCGGAACTCTG
CTCGACTGCCTCGAAGCACATGGAGGATGATAACGTTGACAAAGCTTGCGTAAGCGATCC
GGATTCAGTACCGGTTACGGAGAACGTTGTTGAGTTGGACGACGAGGGAGTCGACATCCC
TACGGTCGGGGACACCGAATGGGACGATCCCCGTTCTTCCGAAGTGTCTGATGTAAGGGA
AGTAACCACAGAACCCGAAGAAAACAGCTTGGATATTCCTGTCGATACTTGATGTCCAAC
CCCTTCTGTGAGAAGAATCGCTTAGAAGGCTTAAGCTGGACGCCGGCCATTCTTGTTCGC
CGTGGTGAGTTGTGTTAGTAGATCCTCGTTTTAGTTCATTGTTACATTCTTGTTCAAGTT
TCGGCATGAGTTACTGAATTTGAGTCCATTTAGACTTGTGTGCCCTGTCTCTCCTGAAAT
AAAAAAGCGCAACTGTGTTGAGTCTGCAAGTGTACACCTGAACTCACTCTCATGTTTAGA
AGGTCATCTTTGGCATTTTCCCCTTGTTATTCAGGAAATTCTTGTTGTATCCTGCAAACT
GAGCTAGTAAAATTTGCACTGATTCTTTC