Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007716_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:2:238069977:238074569:-1 gene:Zm00001d007716 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactolipid galactosyltransferase SFR2 chloroplastic
Sequence

ATGCTTCCCGCCACTCCTATCCATCCATCTCTTCCCCACGCACACAACAAAAGATCTCAG
AGCCACACAGCGAGCGCGAGCGAGAGGCGCGCTGTTGCGGAAATGCCGCTCCCGGCGTTC
CTGGCGGCGGCGGCGAGGCTCGCCGTCCTGCTGGCCGCCGCCGTGACTGCGGCCAACGCG
GTCTCCTTCGCGCGCTACCGGCGCCGCCACCTCCGCCGCATCCCCAACCCCATCGACGAG
TCCGCCGACCCCGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCA
GAAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGGACAGGTTG
GAAGACGCTTGGCTTCAGTTTGCGGTGGAGCACTCCTGCGACGACAAGGAGGCCATGCGC
GACCCTACGACAGCAGATGCGGTGATGGCGTCCGCTGCAGGGGACGGAGGTGCTCAGTTG
GCTTCTCGTAGGTCGTCCAGAGGGGATGATGATAGGGATGGTGATGGAGAGTTGAGGAAG
CCTCTTAAGATCGCCATGGAGGCGATGCTCAGGGGGTTTGAAATGTTTGCTGAGGGTGGT
GAGTCAGGTTCTGCTGCTGCTGCTGGTGACAGTTGCAGCCACAACGTTGCGGCTTGGCAC
AATGTCCCTTGCCCGCAAGAAAGGCTTAAGTTTTGGTCTGATCCTGATACTGAGTTGAAA
CTTGCTAAGGAAACTGGGATCAGTGTTTTCCGCATGGGGATTGATTGGACGAGGGTAATG
CCGAAGGAACCAATCGAAGACCTCGAGAGCTCAGTGAGCACAGACATCAAGGTGCTGTTT
GGTTCACGAAATGTCAATTTTGCGGCGCTCGAGCGGTATAGATGGATCGTCCAAAGGGTT
CGTGACTATGGAATGAAAGTGATGCTTACGCTGTTTCACCACTCGCTTCCACCTTGGGCC
GGAGAATATGGCGGGTGGAGGATGGAAAAAACGGTCAAGTACTTTCTGGACTTTGTGAGG
CTTGTTGTTGATCGTGTATCAGATTTGGTGGACTACTGGGTGGTTTTCAATGAACCTCAT
GTGTTTGTGATGCTGACCTATTGTGCCGGTGCTTGGCCTGGTGGTGACCCTAATGCAATC
GAGGTAGCGACGTCTGCTTTGCCGACTGGTGTATACAACCAAGCATTGCATTGGATGGCT
ATTGCACATGCGGAAGCCTACGATTACATACATTCAAAAGGCGAAAGTAAAAGGAAGCCG
GTCGTTGGTGTCGCTCATCATGTATCATTTACACGACCCTATGGTCTGTTTGATGTTGCC
GCTGTCACACTGGCTAATTCATTGACCCTTTTCCCTTACATCGATAGCATATGTGACAAA
TTGGATTTTATTGGCATCAACTACTACGGGCAGGAGGTGATATCAGGCCCTGGCCTAAAG
CTCGTGGACAATGATGAGTACAGCGAATCTGGTCGGGGTGTTTATCCTGACGGGCTGTTT
CGTATTCTGATTCGGTTTAACGAACGATACAAGAGCTTGAATATACCTTTCGTAGTTACT
GAAAATGGAGTTTCTGATGAGACTGATCTGATCCGGAAACCATATATTCTGGAGCACCTG
TTAGCCATTTATGCTGCAATCCTTATGGGTGTGCCTGTGCTTGGTTATCTATTCTGGACA
ACGTCAGATAATTGGGAATGGGCAGATGGCTATGGTCCTAAGTTTGGGCTTGTGGCTGTT
GATCGTGCTAACAACCTAGCACGGAAACCTAGGCCATCATACTATTTGTTCTCTAAGATT
GTTACAACTGGGAAAATCACAAGACATGACAGGTTGGCTGCTTGGAGGGAGCTGCAACAG
GCAGCGTTTCAGAAGAAAACACGCCCGTTTTTTAGGGCAGTAGATAAACATGGCCGGATG
TATGCAGGGGGTCTGGATCGGCCTATCCAGAGATCATTCATATTGCGGGATTGGCGATTT
GGTCATTATGAAATGGAAGGCTTGCAGGATCCTTTCAGCCGATTTATAACATCCATTATT
TCAACAATTTTGTGGAAGAAGAAGATCAGTTACATTGAGGATGAGGATATTTCTTATTCT
CTTTCTTGTTGA

Peptide Sequence

PEP ID

Zm00001d007716_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:2:238069977:238074569:-1 gene:Zm00001d007716 transcript:Zm00001d007716_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactolipid galactosyltransferase SFR2 chloroplastic
Sequence

MLPATPIHPSLPHAHNKRSQSHTASASERRAVAEMPLPAFLAAAARLAVLLAAAVTAANA
VSFARYRRRHLRRIPNPIDESADPVADFRALRPASAEDAAEDDSFFFGLATAPAHVEDRL
EDAWLQFAVEHSCDDKEAMRDPTTADAVMASAAGDGGAQLASRRSSRGDDDRDGDGELRK
PLKIAMEAMLRGFEMFAEGGESGSAAAAGDSCSHNVAAWHNVPCPQERLKFWSDPDTELK
LAKETGISVFRMGIDWTRVMPKEPIEDLESSVSTDIKVLFGSRNVNFAALERYRWIVQRV
RDYGMKVMLTLFHHSLPPWAGEYGGWRMEKTVKYFLDFVRLVVDRVSDLVDYWVVFNEPH
VFVMLTYCAGAWPGGDPNAIEVATSALPTGVYNQALHWMAIAHAEAYDYIHSKGESKRKP
VVGVAHHVSFTRPYGLFDVAAVTLANSLTLFPYIDSICDKLDFIGINYYGQEVISGPGLK
LVDNDEYSESGRGVYPDGLFRILIRFNERYKSLNIPFVVTENGVSDETDLIRKPYILEHL
LAIYAAILMGVPVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLARKPRPSYYLFSKI
VTTGKITRHDRLAAWRELQQAAFQKKTRPFFRAVDKHGRMYAGGLDRPIQRSFILRDWRF
GHYEMEGLQDPFSRFITSIISTILWKKKISYIEDEDISYSLSC

Transcript Sequence

Transcript ID

Zm00001d007716_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:238069977:238074569:-1 gene:Zm00001d007716 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactolipid galactosyltransferase SFR2 chloroplastic
Sequence

GAGCCGATGCTTCCCGCCACTCCTATCCATCCATCTCTTCCCCACGCACACAACAAAAGA
TCTCAGAGCCACACAGCGAGCGCGAGCGAGAGGCGCGCTGTTGCGGAAATGCCGCTCCCG
GCGTTCCTGGCGGCGGCGGCGAGGCTCGCCGTCCTGCTGGCCGCCGCCGTGACTGCGGCC
AACGCGGTCTCCTTCGCGCGCTACCGGCGCCGCCACCTCCGCCGCATCCCCAACCCCATC
GACGAGTCCGCCGACCCCGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGAC
GCCGCAGAAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGGAC
AGGTTGGAAGACGCTTGGCTTCAGTTTGCGGTGGAGCACTCCTGCGACGACAAGGAGGCC
ATGCGCGACCCTACGACAGCAGATGCGGTGATGGCGTCCGCTGCAGGGGACGGAGGTGCT
CAGTTGGCTTCTCGTAGGTCGTCCAGAGGGGATGATGATAGGGATGGTGATGGAGAGTTG
AGGAAGCCTCTTAAGATCGCCATGGAGGCGATGCTCAGGGGGTTTGAAATGTTTGCTGAG
GGTGGTGAGTCAGGTTCTGCTGCTGCTGCTGGTGACAGTTGCAGCCACAACGTTGCGGCT
TGGCACAATGTCCCTTGCCCGCAAGAAAGGCTTAAGTTTTGGTCTGATCCTGATACTGAG
TTGAAACTTGCTAAGGAAACTGGGATCAGTGTTTTCCGCATGGGGATTGATTGGACGAGG
GTAATGCCGAAGGAACCAATCGAAGACCTCGAGAGCTCAGTGAGCACAGACATCAAGGTG
CTGTTTGGTTCACGAAATGTCAATTTTGCGGCGCTCGAGCGGTATAGATGGATCGTCCAA
AGGGTTCGTGACTATGGAATGAAAGTGATGCTTACGCTGTTTCACCACTCGCTTCCACCT
TGGGCCGGAGAATATGGCGGGTGGAGGATGGAAAAAACGGTCAAGTACTTTCTGGACTTT
GTGAGGCTTGTTGTTGATCGTGTATCAGATTTGGTGGACTACTGGGTGGTTTTCAATGAA
CCTCATGTGTTTGTGATGCTGACCTATTGTGCCGGTGCTTGGCCTGGTGGTGACCCTAAT
GCAATCGAGGTAGCGACGTCTGCTTTGCCGACTGGTGTATACAACCAAGCATTGCATTGG
ATGGCTATTGCACATGCGGAAGCCTACGATTACATACATTCAAAAGGCGAAAGTAAAAGG
AAGCCGGTCGTTGGTGTCGCTCATCATGTATCATTTACACGACCCTATGGTCTGTTTGAT
GTTGCCGCTGTCACACTGGCTAATTCATTGACCCTTTTCCCTTACATCGATAGCATATGT
GACAAATTGGATTTTATTGGCATCAACTACTACGGGCAGGAGGTGATATCAGGCCCTGGC
CTAAAGCTCGTGGACAATGATGAGTACAGCGAATCTGGTCGGGGTGTTTATCCTGACGGG
CTGTTTCGTATTCTGATTCGGTTTAACGAACGATACAAGAGCTTGAATATACCTTTCGTA
GTTACTGAAAATGGAGTTTCTGATGAGACTGATCTGATCCGGAAACCATATATTCTGGAG
CACCTGTTAGCCATTTATGCTGCAATCCTTATGGGTGTGCCTGTGCTTGGTTATCTATTC
TGGACAACGTCAGATAATTGGGAATGGGCAGATGGCTATGGTCCTAAGTTTGGGCTTGTG
GCTGTTGATCGTGCTAACAACCTAGCACGGAAACCTAGGCCATCATACTATTTGTTCTCT
AAGATTGTTACAACTGGGAAAATCACAAGACATGACAGGTTGGCTGCTTGGAGGGAGCTG
CAACAGGCAGCGTTTCAGAAGAAAACACGCCCGTTTTTTAGGGCAGTAGATAAACATGGC
CGGATGTATGCAGGGGGTCTGGATCGGCCTATCCAGAGATCATTCATATTGCGGGATTGG
CGATTTGGTCATTATGAAATGGAAGGCTTGCAGGATCCTTTCAGCCGATTTATAACATCC
ATTATTTCAACAATTTTGTGGAAGAAGAAGATCAGTTACATTGAGGATGAGGATATTTCT
TATTCTCTTTCTTGTTGATGCTTCTTACTCTAGGTGTTATGTCTAAGAGAATTTGAGGTC
CCATTTTTTTTTACTTTCACTGTATATGGCCTGTATAAAATTGTTTGCCCTTATTTTTAT
ATGTAAGTAGCATGATTCGTCCTCTAGACAAAGTAAATATAAAGTTCTAGAAAGTAAAAG
TTTCTCTTTATGGAT