Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007707_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:237891870:237893696:-1 gene:Zm00001d007707 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plant invertase/pectin methylesterase inhibitor superfamily protein
Sequence

ATGAGGGCGCCTCTCCTCTCCTCGCTCCTCGTCCTCGCCGTCGTCGCCACCGTGCCTCTA
CTAGTCCCGGCGGTGTGCATCTCGCGGCACGACAAGTCCGAGAGCAAGGCTGACGAAGAA
GCTGCTGCTACTACCGTTGCCGCCGACGAGCATGGCTCTGTCAAGACCATGTCCCTCGAC
GCATACGGGCCACTGGAGATGGCCGCCAAGAAGCCCAAGGAGCAGGTCCTGAACGCGCAA
GCTACGCCGGCGACGACCGCTGGCGCTGACACATATGACCAGAAACCCGTTGGTGAAAAA
CAGGCTGAAACGGCCACGGCCTCCGCTGCCGATGAACAACCCGACAAATACGTGGAAGCT
CTAGTTCCTGACGAGAAGGCGGAGGAATTTCCCGATAAATATGTGGAAGCTCTAGTTCCT
GACGACAAGGTGGAGGTGAAGAAGAAGAAGGTAAAGAAGGAAAAGAAGGACGAGTCTGAT
GATTCTGATGTAGCTACGTCTTATAAGAAGAAGGAGAAGTCTGATGATTCTGAGGTGTCT
ACATCTTATAAGAAGAAGAAGAAATCTGACGATTCTGATGAAGATGCATCTCTTGATAAG
AAAGAAAAGAAGGCGAAGTTTGCAGCATCTGACAAAAAAGAAAAGAAGGACAAGTCTGAC
AACACATCTTCCAAGAAAGAAAAGGAGGAGAGATCCGCCGATTCCGATGCATCTGCGTAT
TTCGACAAGGAAGAGCAGAAATCCGGCGATTCTGACGCCGCCACGTCTGTTGAGAAGCAA
AAGAAGCAGAAGAAGGAGAAATCCGGTGATTATTTCGACAAGGAAAAGGAGGAGAACCCC
GAGGAGGACGCTGCGCCCGTCGACGTCTCCGCGGACGGCGTGTATGTGCCTCTCAAGAAG
GAGAAATCCGGCGAAGACGCCACGCCGGTCGACGTCTCCACCACCACCGGCAAATACGTA
TCTTCTTCTTCCAAGGCAAACGGCAAGCCCACGGGAGGTCAGCCCGCAGAGAGCTCCACC
ACCGCCACCGCGGATGCGTACGCGTCTCCAAAGCAGAAAGTCGTCAGCAGCCAGCCCATG
GCCAGCGCCGCTCCTGACGAGCTTCCGCTGGCGGCCAAGAGCTCCACCACCTCCGACGCG
TACGCATCTCCAAGGCAGCAGCAGGTCGCCAGCAGCCAGCCCATGTCTGGTGGCGCTCCC
GACGAGCTTCCACCGGTGGCCAAGACCTCTGCCACGCCCGAACCGTACGCATCTCTGAAC
GTCGCCGGCGGCGGGCAGCCCAACGAGCCGGCGGCGGGGAGGCCGCCGAAGCTGTCGATG
GAGACGTTCTCGGGGATGATCAAGAGGCCGTTCGCCAAGTTCCTGAGCCCGGTGATCAAG
AGCGTGTGCGCCAAGACGGAGTACCCGGAGGACTGCGAGTCGTCGATCGGGGGCCTCCCG
GGGGCCGCGTCGGCGGCGGCCACGGACAGCGTGGGCGTGCTGAAGCTGGCCATGGAGGCG
GTGCGGCAGAAGGCCATCGAGGCGATGAACGCGGCCACGGACAGGATGAACGCGCCGGGC
ACGGACCCGACGACCAAGGAGGCGCTCGACTCGTGCACGTCGTCGTACAGCGACATCAAG
ACGAGCCTGGAGACGGTGGACGACGCGCTCAAGCGCGGCGACGTCGACACGGCGCACACC
AACCTCGACTCGGTGGAGACGGACATCACCACCTGCGACGACGGCTTCCAGGAGCGCGGC
ACCCCGTCAGTCATGACCGACCACGACCAGGAGCTCCAGAAGCTCGCCAGCAACCTCCTC
TCCATCGGCGCCGCCATCCACCACTAG

Peptide Sequence

PEP ID

Zm00001d007707_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:237891870:237893696:-1 gene:Zm00001d007707 transcript:Zm00001d007707_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plant invertase/pectin methylesterase inhibitor superfamily protein
Sequence

MRAPLLSSLLVLAVVATVPLLVPAVCISRHDKSESKADEEAAATTVAADEHGSVKTMSLD
AYGPLEMAAKKPKEQVLNAQATPATTAGADTYDQKPVGEKQAETATASAADEQPDKYVEA
LVPDEKAEEFPDKYVEALVPDDKVEVKKKKVKKEKKDESDDSDVATSYKKKEKSDDSEVS
TSYKKKKKSDDSDEDASLDKKEKKAKFAASDKKEKKDKSDNTSSKKEKEERSADSDASAY
FDKEEQKSGDSDAATSVEKQKKQKKEKSGDYFDKEKEENPEEDAAPVDVSADGVYVPLKK
EKSGEDATPVDVSTTTGKYVSSSSKANGKPTGGQPAESSTTATADAYASPKQKVVSSQPM
ASAAPDELPLAAKSSTTSDAYASPRQQQVASSQPMSGGAPDELPPVAKTSATPEPYASLN
VAGGGQPNEPAAGRPPKLSMETFSGMIKRPFAKFLSPVIKSVCAKTEYPEDCESSIGGLP
GAASAAATDSVGVLKLAMEAVRQKAIEAMNAATDRMNAPGTDPTTKEALDSCTSSYSDIK
TSLETVDDALKRGDVDTAHTNLDSVETDITTCDDGFQERGTPSVMTDHDQELQKLASNLL
SIGAAIHH

Transcript Sequence

Transcript ID

Zm00001d007707_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:237891870:237893696:-1 gene:Zm00001d007707 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plant invertase/pectin methylesterase inhibitor superfamily protein
Sequence

ATGAGGGCGCCTCTCCTCTCCTCGCTCCTCGTCCTCGCCGTCGTCGCCACCGTGCCTCTA
CTAGTCCCGGCGGTGTGCATCTCGCGGCACGACAAGTCCGAGAGCAAGGCTGACGAAGAA
GCTGCTGCTACTACCGTTGCCGCCGACGAGCATGGCTCTGTCAAGACCATGTCCCTCGAC
GCATACGGGCCACTGGAGATGGCCGCCAAGAAGCCCAAGGAGCAGGTCCTGAACGCGCAA
GCTACGCCGGCGACGACCGCTGGCGCTGACACATATGACCAGAAACCCGTTGGTGAAAAA
CAGGCTGAAACGGCCACGGCCTCCGCTGCCGATGAACAACCCGACAAATACGTGGAAGCT
CTAGTTCCTGACGAGAAGGCGGAGGAATTTCCCGATAAATATGTGGAAGCTCTAGTTCCT
GACGACAAGGTGGAGGTGAAGAAGAAGAAGGTAAAGAAGGAAAAGAAGGACGAGTCTGAT
GATTCTGATGTAGCTACGTCTTATAAGAAGAAGGAGAAGTCTGATGATTCTGAGGTGTCT
ACATCTTATAAGAAGAAGAAGAAATCTGACGATTCTGATGAAGATGCATCTCTTGATAAG
AAAGAAAAGAAGGCGAAGTTTGCAGCATCTGACAAAAAAGAAAAGAAGGACAAGTCTGAC
AACACATCTTCCAAGAAAGAAAAGGAGGAGAGATCCGCCGATTCCGATGCATCTGCGTAT
TTCGACAAGGAAGAGCAGAAATCCGGCGATTCTGACGCCGCCACGTCTGTTGAGAAGCAA
AAGAAGCAGAAGAAGGAGAAATCCGGTGATTATTTCGACAAGGAAAAGGAGGAGAACCCC
GAGGAGGACGCTGCGCCCGTCGACGTCTCCGCGGACGGCGTGTATGTGCCTCTCAAGAAG
GAGAAATCCGGCGAAGACGCCACGCCGGTCGACGTCTCCACCACCACCGGCAAATACGTA
TCTTCTTCTTCCAAGGCAAACGGCAAGCCCACGGGAGGTCAGCCCGCAGAGAGCTCCACC
ACCGCCACCGCGGATGCGTACGCGTCTCCAAAGCAGAAAGTCGTCAGCAGCCAGCCCATG
GCCAGCGCCGCTCCTGACGAGCTTCCGCTGGCGGCCAAGAGCTCCACCACCTCCGACGCG
TACGCATCTCCAAGGCAGCAGCAGGTCGCCAGCAGCCAGCCCATGTCTGGTGGCGCTCCC
GACGAGCTTCCACCGGTGGCCAAGACCTCTGCCACGCCCGAACCGTACGCATCTCTGAAC
GTCGCCGGCGGCGGGCAGCCCAACGAGCCGGCGGCGGGGAGGCCGCCGAAGCTGTCGATG
GAGACGTTCTCGGGGATGATCAAGAGGCCGTTCGCCAAGTTCCTGAGCCCGGTGATCAAG
AGCGTGTGCGCCAAGACGGAGTACCCGGAGGACTGCGAGTCGTCGATCGGGGGCCTCCCG
GGGGCCGCGTCGGCGGCGGCCACGGACAGCGTGGGCGTGCTGAAGCTGGCCATGGAGGCG
GTGCGGCAGAAGGCCATCGAGGCGATGAACGCGGCCACGGACAGGATGAACGCGCCGGGC
ACGGACCCGACGACCAAGGAGGCGCTCGACTCGTGCACGTCGTCGTACAGCGACATCAAG
ACGAGCCTGGAGACGGTGGACGACGCGCTCAAGCGCGGCGACGTCGACACGGCGCACACC
AACCTCGACTCGGTGGAGACGGACATCACCACCTGCGACGACGGCTTCCAGGAGCGCGGC
ACCCCGTCAGTCATGACCGACCACGACCAGGAGCTCCAGAAGCTCGCCAGCAACCTCCTC
TCCATCGGCGCCGCCATCCACCACTAG