Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007698_T040
CDS Infomation

cds chromosome:B73_RefGen_v4:2:237621194:237632317:-1 gene:Zm00001d007698 gene_biotype:protein_coding transcript_biotype:protein_coding description:AAA-type ATPase family protein
Sequence

ATGGTGGAGACTCGCCGGAGCTCGGCCGCTGCGAAGCGCCCGTCCCCGTCGCCGTCCTCT
TCGTCCGTACCTCCCCCGAAGCGGCCCAAGGCGGAGTCTCCGGGGTCACCGACGGCCTCC
GCGCCCGCGAGAGCGGAGGAGGATTCCGTGGCGGGAGCGGCACCCGCGAGGAGCGACGGC
TCGGCCGACGACGCGGCGGCGGCGGTTGCACAGAAAGATCAAGGAGCGGATAAGCCTTCT
TCCGCCGCGGCCGAGAGTTCAAAGAGGAGAAAGGAGCCGGAGCAACAGCAACCCGCAGCG
CCATGGGCAAAGCTGCTCTCGCAGTGCTCACAGACTCCTCACTATCCCATCATTGCCGCT
CAGTTTTCTGTTGGTCAAAGCAAAAACTGTAATTTGTGGCTGAAAGACCAGCCTGTTAGC
AAGGTGCTTTGCAAGCTGCGGCGCCTTGAGCATGGAGGTCCATGTGAGTTAGAAGTTCTT
GGAAAGAAGGGTATGGTCCAATTAAATGGAAGGTCCATAAGTTCAGGCACAAAAGTTCCC
CTTACAGGAGGGGATGAAGTCATATTCAATTCATGCGGCAAGCATGCTTATATTTTTCAG
CATCCTTTGAGTGACAAAGCTCCTAAAACGGTGCCATCATCTGCTGTTAGTCTTATAGAA
CCTCCGGTTGCTAGCGTAAAGCGCATCCGTACAGATAAGAGAACAGGAGACACTTCTGCT
ATTGCTGGTACAGAGATGTTGCCATCTACATCTAATCAGGCAAAGGATGTAGCAGCAGCA
CCTCCCGCGTTCGCCGGAGAGAACAGCCAAAGAGTAATGCTGCCAATGGCATCATCTGCG
TCTGATAAATCAAAAGGGCACACTGTGAGCCCTGATAAGGAATTTGAGAATGGGGAAAAT
GCTAATGAGGTTAATTCTAACATTGAAGACTCTCCAATGGATGCTGCTGCAGCCCCCATA
TCTCCTGATGCTGCTGCGAACGATGCATGTCAACAAAATGGCTTTTTGCCTGATGCTCAT
CTTGGTGCGGAAATCGGTAAGATTGCAACCTATAAGATAAGGCCAGTTCTGAGGATGATT
ACAGGATCAACTATATCCGAGTTCGATTTGACTGGTGATCTTTTTAAAGCTCTTGAAGAT
CAGAGGGATCTCATCAGGGATCTTAACGCTTCAGCCAGTGTGCCTCCGAGTAGATGTCAA
GCCTTTAAGGATGGGATGAAACAAGGAATTATTAATCCAAGTGATATTGATGTTACCTTT
GAGGATTTTCCTTATTATGTCAGTGAGAACACAAAGAATGTGCTCTTGTCATGTGCATTC
ATACACTTGGAAAAGAAGGAGTTCATCAAGCAGTTTGCTGAGATTTCATCAATAAACCAA
CGAATTTTGTTATCCGGTCCCGCAGGTTCTGAGATTTATCAGGAAACATTGGTAAAGGCA
CTTGCGAAACATTTTGGTGCTAGACTTCTTGTCGTGGATTCACTTTTGCTACCTGGGGCA
CCTTTGAAGGATGCAGAGTCCCAGAAAGATGTTGGGAAGGGTGATAAATCAGGGGATAAG
GGAACTGCTGAGAAGTTTGCAATATATCAGAAGCATCGTTCTTCGTTGGCAGACACTGTT
CAGTTCAGGAGGCCAGCTGCTCCAACTTCCAGTGTGAATGCTGATATTGTGGGAACATCC
ACTCTGCAGTCTGCATCTCTACCGAAACAAGAATCCTCAACAGCTACATCCAAGAGCTAT
ACTTTCAGAGAAGGTGATAGGGTGCGTTACGTTGGTCCAGCTCAGCTATCCTCATTGTCA
CAAAGGGGACCAAGTTATGGTTATCGAGGCAGAGTGATGCTTGCTTTTGAAGATAATGGA
TCCTCAAAAATTGGAGTCCGATTTGACAAGCAGATCCCTGATGGTAATGATCTTGGTGGT
TTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTGCTGAATCACTTCGCCCAGACTTTTCT
GCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAGGTCATTTCAGAAGAG
AACAAATCTGGACCTCTGATTGTGTTACTTAAGGATGTAGAGAAATCATTCACTGGAGTT
ACCGAGTCACTTTCATCTTTGCGGAGCAAATTTGAATCGCTTCCATCTGGTGTTCTTATT
ATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAGGCGCATCCTGGAGGTTTTCTT
TTCACAAAGTTTGCCAGTAGCAGCCAGACACTTTTTGACCTTTTCCCGGATAGCTTTGGT
AGCAGGTGGTTGCATGAAAGAAGCAAAGAAAGTCCAAAGGCAATGAAACATCTGAATAAG
CTTTTCCCAAACAAGATTTCGATTCAGCTTCCGCAGGATGAAGCTCTACTTACAGATTGG
AAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAATCAAACATTGGTAGCATT
CGCACGTTTCTGAGTCGCAATGGAATTGAATGCAATGATATTGAAGAATTATTCATCAAA
GACCAATCACTGAGTAATGAAAATGTGGACAAGATTGTTGGATACGCAGTGAGTTATCAC
CTTAAGCACAATAAAATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGT
GAAAGCCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAGC

Peptide Sequence

PEP ID

Zm00001d007698_P040
PEP Infomation

pep chromosome:B73_RefGen_v4:2:237621194:237632317:-1 gene:Zm00001d007698 transcript:Zm00001d007698_T040 gene_biotype:protein_coding transcript_biotype:protein_coding description:AAA-type ATPase family protein
Sequence

MVETRRSSAAAKRPSPSPSSSSVPPPKRPKAESPGSPTASAPARAEEDSVAGAAPARSDG
SADDAAAAVAQKDQGADKPSSAAAESSKRRKEPEQQQPAAPWAKLLSQCSQTPHYPIIAA
QFSVGQSKNCNLWLKDQPVSKVLCKLRRLEHGGPCELEVLGKKGMVQLNGRSISSGTKVP
LTGGDEVIFNSCGKHAYIFQHPLSDKAPKTVPSSAVSLIEPPVASVKRIRTDKRTGDTSA
IAGTEMLPSTSNQAKDVAAAPPAFAGENSQRVMLPMASSASDKSKGHTVSPDKEFENGEN
ANEVNSNIEDSPMDAAAAPISPDAAANDACQQNGFLPDAHLGAEIGKIATYKIRPVLRMI
TGSTISEFDLTGDLFKALEDQRDLIRDLNASASVPPSRCQAFKDGMKQGIINPSDIDVTF
EDFPYYVSENTKNVLLSCAFIHLEKKEFIKQFAEISSINQRILLSGPAGSEIYQETLVKA
LAKHFGARLLVVDSLLLPGAPLKDAESQKDVGKGDKSGDKGTAEKFAIYQKHRSSLADTV
QFRRPAAPTSSVNADIVGTSTLQSASLPKQESSTATSKSYTFREGDRVRYVGPAQLSSLS
QRGPSYGYRGRVMLAFEDNGSSKIGVRFDKQIPDGNDLGGLCEEDHGFFCSAESLRPDFS
AGEEVERLAMTELIEVISEENKSGPLIVLLKDVEKSFTGVTESLSSLRSKFESLPSGVLI
IGSHTQMDSRKEKAHPGGFLFTKFASSSQTLFDLFPDSFGSRWLHERSKESPKAMKHLNK
LFPNKISIQLPQDEALLTDWKQQLDRDVETLKAKSNIGSIRTFLSRNGIECNDIEELFIK
DQSLSNENVDKIVGYAVSYHLKHNKIETSNSKDNKLVLTSESLKHGLNMLQSMQSDNKS

Transcript Sequence

Transcript ID

Zm00001d007698_T040
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:237621194:237632317:-1 gene:Zm00001d007698 gene_biotype:protein_coding transcript_biotype:protein_coding description:AAA-type ATPase family protein
Sequence

GAACTCTCGCTCGAGGGGTGGAAAAGAAGCGGAAGGAGAGACGAGACGAGAGGAAACCCT
CGCCTCCGCCACACGCCATGGTGGAGACTCGCCGGAGCTCGGCCGCTGCGAAGCGCCCGT
CCCCGTCGCCGTCCTCTTCGTCCGTACCTCCCCCGAAGCGGCCCAAGGCGGAGTCTCCGG
GGTCACCGACGGCCTCCGCGCCCGCGAGAGCGGAGGAGGATTCCGTGGCGGGAGCGGCAC
CCGCGAGGAGCGACGGCTCGGCCGACGACGCGGCGGCGGCGGTTGCACAGAAAGATCAAG
GAGCGGATAAGCCTTCTTCCGCCGCGGCCGAGAGTTCAAAGAGGAGAAAGGAGCCGGAGC
AACAGCAACCCGCAGCGCCATGGGCAAAGCTGCTCTCGCAGTGCTCACAGACTCCTCACT
ATCCCATCATTGCCGCTCAGTTTTCTGTTGGTCAAAGCAAAAACTGTAATTTGTGGCTGA
AAGACCAGCCTGTTAGCAAGGTGCTTTGCAAGCTGCGGCGCCTTGAGCATGGAGGTCCAT
GTGAGTTAGAAGTTCTTGGAAAGAAGGGTATGGTCCAATTAAATGGAAGGTCCATAAGTT
CAGGCACAAAAGTTCCCCTTACAGGAGGGGATGAAGTCATATTCAATTCATGCGGCAAGC
ATGCTTATATTTTTCAGCATCCTTTGAGTGACAAAGCTCCTAAAACGGTGCCATCATCTG
CTGTTAGTCTTATAGAACCTCCGGTTGCTAGCGTAAAGCGCATCCGTACAGATAAGAGAA
CAGGAGACACTTCTGCTATTGCTGGTACAGAGATGTTGCCATCTACATCTAATCAGGCAA
AGGATGTAGCAGCAGCACCTCCCGCGTTCGCCGGAGAGAACAGCCAAAGAGTAATGCTGC
CAATGGCATCATCTGCGTCTGATAAATCAAAAGGGCACACTGTGAGCCCTGATAAGGAAT
TTGAGAATGGGGAAAATGCTAATGAGGTTAATTCTAACATTGAAGACTCTCCAATGGATG
CTGCTGCAGCCCCCATATCTCCTGATGCTGCTGCGAACGATGCATGTCAACAAAATGGCT
TTTTGCCTGATGCTCATCTTGGTGCGGAAATCGGTAAGATTGCAACCTATAAGATAAGGC
CAGTTCTGAGGATGATTACAGGATCAACTATATCCGAGTTCGATTTGACTGGTGATCTTT
TTAAAGCTCTTGAAGATCAGAGGGATCTCATCAGGGATCTTAACGCTTCAGCCAGTGTGC
CTCCGAGTAGATGTCAAGCCTTTAAGGATGGGATGAAACAAGGAATTATTAATCCAAGTG
ATATTGATGTTACCTTTGAGGATTTTCCTTATTATGTCAGTGAGAACACAAAGAATGTGC
TCTTGTCATGTGCATTCATACACTTGGAAAAGAAGGAGTTCATCAAGCAGTTTGCTGAGA
TTTCATCAATAAACCAACGAATTTTGTTATCCGGTCCCGCAGGTTCTGAGATTTATCAGG
AAACATTGGTAAAGGCACTTGCGAAACATTTTGGTGCTAGACTTCTTGTCGTGGATTCAC
TTTTGCTACCTGGGGCACCTTTGAAGGATGCAGAGTCCCAGAAAGATGTTGGGAAGGGTG
ATAAATCAGGGGATAAGGGAACTGCTGAGAAGTTTGCAATATATCAGAAGCATCGTTCTT
CGTTGGCAGACACTGTTCAGTTCAGGAGGCCAGCTGCTCCAACTTCCAGTGTGAATGCTG
ATATTGTGGGAACATCCACTCTGCAGTCTGCATCTCTACCGAAACAAGAATCCTCAACAG
CTACATCCAAGAGCTATACTTTCAGAGAAGGTGATAGGGTGCGTTACGTTGGTCCAGCTC
AGCTATCCTCATTGTCACAAAGGGGACCAAGTTATGGTTATCGAGGCAGAGTGATGCTTG
CTTTTGAAGATAATGGATCCTCAAAAATTGGAGTCCGATTTGACAAGCAGATCCCTGATG
GTAATGATCTTGGTGGTTTGTGCGAGGAAGATCATGGCTTCTTCTGCTCTGCTGAATCAC
TTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAG
AGGTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGATGTAGAGA
AATCATTCACTGGAGTTACCGAGTCACTTTCATCTTTGCGGAGCAAATTTGAATCGCTTC
CATCTGGTGTTCTTATTATAGGATCCCACACTCAGATGGACAGCCGCAAAGAAAAGGCGC
ATCCTGGAGGTTTTCTTTTCACAAAGTTTGCCAGTAGCAGCCAGACACTTTTTGACCTTT
TCCCGGATAGCTTTGGTAGCAGGTGGTTGCATGAAAGAAGCAAAGAAAGTCCAAAGGCAA
TGAAACATCTGAATAAGCTTTTCCCAAACAAGATTTCGATTCAGCTTCCGCAGGATGAAG
CTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAAT
CAAACATTGGTAGCATTCGCACGTTTCTGAGTCGCAATGGAATTGAATGCAATGATATTG
AAGAATTATTCATCAAAGACCAATCACTGAGTAATGAAAATGTGGACAAGATTGTTGGAT
ACGCAGTGAGTTATCACCTTAAGCACAATAAAATTGAAACCTCCAACTCGAAGGATAATA
AACTTGTACTCACAAGTGAAAGCCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAA
GTGATAACAAGAGCT