Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d007635_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:2:236671676:236677308:1 gene:Zm00001d007635 gene_biotype:protein_coding transcript_biotype:protein_coding description:Splicing factor U2af large subunit B
Sequence	ATGGCTGAGTACGGCGAGCGCTACCAGGGCAACGGCGACCAGGCCACGGCCGAGGGTGGC TATGCGCAGACCGAGTACGCCGCCGGCGCCGGTGGCTCGCCGCCCTCCGACAGCAATCCC TCCGTGTTCTCCGACCACGCCGACGGCCGCTCCTCCCAGCCCCAGCATGAGACCCAATCA CATGACAGTGGTTCCTCCAAATCTCAAGAAAGGGACCGAGAACGTGATAAGGGCAAGGAC AGGGAGCGAGGCAGAGACCGTGTCCGCGAAAAGGAGAGGGGCCGAGACAGGGACAAGGAT CGTGAAAGAGGTGACAGAGACAGGGATCGTGATCGCCACCACAGGGATCGTCGCGAGCGC AGCGAGATAAGGGAACACCGTGATCGTTCTGATGATCGTGACCGTCGCAGGAGTCATGAT TCTGAGAGGAGAAGAGATCGTGACAGAGATGGCCATCGTAGGCATCGCTCCCGTTCCCCT TCTAAGGGTCGTGACCGTGACCGCAGATCTAGTTCTCATTCACGCTCTAGATCGAAGAGC AAGCGTGTGAGTGGTTTTGACCAAGCACCTACACAACAGGCAGTTCCTATTGTTGCTGCT GGTGTTATCCCTGGTCAGCTGCCTGGTGTCACCGCTCCTATTCCTGGGGTTGGGGTGCTT CCAAACTTGTATAATTTGGCTGCAGGACAGTTCAACCCCCATGTTATTCAGCCACAAGCC ATGACACAACAGGCTACCCGGCATGCTCGGCCTGTCTATGTGGGCGGACTTCCTCCAACT GCTAATGAGCAGACCGTTGCCATATTCTTCAATGGAGTTATGGCTGCTATTGGAGGAAAC ACAGCTGGTCCAGGTGATGCTGTTCCCAGTCAACCACCGCTATGGCCTAGGGGCTTCATT CAGCAGCATCCTTTGGATTGCAACATGATGAGAAACATTAATTTTTCTAATGCATCCTAT GGTCCAACAACAATGTGGGCTCCCATTCAGACAGGAAATATAAGTTCCGAATCAACCATG CTACCAGCCACACAATCTGCAGTATATTGGAATCATTATATGAACTTTGTCAGGAATCCT CTTGGTTCAGTTCAAGGAAATCCTTTTCCAGATTCGTTTTCAGGTACAAATACTAGTACA CCTTTGCAGGGTTCGAATACAATACCTTCAATACCTGTCAACTTGGAGTCCGCTGCTGAA CATAGTGTTCAGGACATCAATAGTCCTATAAAGACTTCTGCCCCTGTTACAAAACCAAAG AAAACAAAGGAACAAAATTATACTGCTGCTGAAGACCTTCTACTTTGCACAACCTGGTTG CAAATTAGCAGTGATCCTATTGTCCACACTGGACAAAGGAAGAAGGGACTTTGGGCACGA ATAGAAAAAAGGTACAACGAACAAAGGGGCGAGTACCCTTGTAGAATGAATCGAGCCCTT AGCAGCAGATGGGACAAGATTAGAGCAGATGTTGGTAAGTTCTCAGGCTGTTACGCAAGA GTGCTGCGAGAGAAACAAAGTGGTTTGACAGACGACGATAAGACTTCCAAGGCGGCAACT TTGTTTGCACATGAGGAGAACAAACCATTTCATTTTATGCATTGCTGGCATAAGCTGAAG GGGGAACCTAAATGGGAGAGCATTTGTCAAGGACCTTTCCGAGGATTACATGGAAAAGCA ATTGGATCTTCTGGTGGTCCTTTTATTGGTGTAGAAGAATCAGATAGTGGGTCTGCTGGT TTGACTGGTAAACGGCCTCTCTGTCGTGATTCTTCTAAATCAGAGAGAAAGAAGGCTGCG TCATCAACGACGACGGAATACTTAAGCCGTCTTCAAGAATTAACTGAAAAACTAATTCAG CGCATCATAGAAAAGGGTGAGAAGAAATATAAGTACAATGAACAGGACATGGAGCTAGAG AAGAAGAGGTTGGACTTGGAAGCAAAAAAATTAAGCATTCGTAAAAGGGAATTGAGATTA AAAGAACTAAGTATGGCCGAACAACAACTCGAGATGCTGGAGCGTACTCGTGAAGACGAG GTCGATCCAGAAGTATGGAGTATGATGAAGGAGCGCAAAAAACATTTGCAGCAGTTCATA TTTAGTTTTTGCTAA

Peptide Sequence

PEP ID	Zm00001d007635_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:2:236671676:236677308:1 gene:Zm00001d007635 transcript:Zm00001d007635_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Splicing factor U2af large subunit B
Sequence	MAEYGERYQGNGDQATAEGGYAQTEYAAGAGGSPPSDSNPSVFSDHADGRSSQPQHETQS HDSGSSKSQERDRERDKGKDRERGRDRVREKERGRDRDKDRERGDRDRDRDRHHRDRRER SEIREHRDRSDDRDRRRSHDSERRRDRDRDGHRRHRSRSPSKGRDRDRRSSSHSRSRSKS KRVSGFDQAPTQQAVPIVAAGVIPGQLPGVTAPIPGVGVLPNLYNLAAGQFNPHVIQPQA MTQQATRHARPVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVPSQPPLWPRGFI QQHPLDCNMMRNINFSNASYGPTTMWAPIQTGNISSESTMLPATQSAVYWNHYMNFVRNP LGSVQGNPFPDSFSGTNTSTPLQGSNTIPSIPVNLESAAEHSVQDINSPIKTSAPVTKPK KTKEQNYTAAEDLLLCTTWLQISSDPIVHTGQRKKGLWARIEKRYNEQRGEYPCRMNRAL SSRWDKIRADVGKFSGCYARVLREKQSGLTDDDKTSKAATLFAHEENKPFHFMHCWHKLK GEPKWESICQGPFRGLHGKAIGSSGGPFIGVEESDSGSAGLTGKRPLCRDSSKSERKKAA SSTTTEYLSRLQELTEKLIQRIIEKGEKKYKYNEQDMELEKKRLDLEAKKLSIRKRELRL KELSMAEQQLEMLERTREDEVDPEVWSMMKERKKHLQQFIFSFC

Transcript Sequence

Transcript ID	Zm00001d007635_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:236671676:236677308:1 gene:Zm00001d007635 gene_biotype:protein_coding transcript_biotype:protein_coding description:Splicing factor U2af large subunit B
Sequence	GTCCCCAACCCGAACCGTGAGATGGCTGAGTACGGCGAGCGCTACCAGGGCAACGGCGAC CAGGCCACGGCCGAGGGTGGCTATGCGCAGACCGAGTACGCCGCCGGCGCCGGTGGCTCG CCGCCCTCCGACAGCAATCCCTCCGTGTTCTCCGACCACGCCGACGGCCGCTCCTCCCAG CCCCAGCATGAGACCCAATCACATGACAGTGGTTCCTCCAAATCTCAAGAAAGGGACCGA GAACGTGATAAGGGCAAGGACAGGGAGCGAGGCAGAGACCGTGTCCGCGAAAAGGAGAGG GGCCGAGACAGGGACAAGGATCGTGAAAGAGGTGACAGAGACAGGGATCGTGATCGCCAC CACAGGGATCGTCGCGAGCGCAGCGAGATAAGGGAACACCGTGATCGTTCTGATGATCGT GACCGTCGCAGGAGTCATGATTCTGAGAGGAGAAGAGATCGTGACAGAGATGGCCATCGT AGGCATCGCTCCCGTTCCCCTTCTAAGGGTCGTGACCGTGACCGCAGATCTAGTTCTCAT TCACGCTCTAGATCGAAGAGCAAGCGTGTGAGTGGTTTTGACCAAGCACCTACACAACAG GCAGTTCCTATTGTTGCTGCTGGTGTTATCCCTGGTCAGCTGCCTGGTGTCACCGCTCCT ATTCCTGGGGTTGGGGTGCTTCCAAACTTGTATAATTTGGCTGCAGGACAGTTCAACCCC CATGTTATTCAGCCACAAGCCATGACACAACAGGCTACCCGGCATGCTCGGCCTGTCTAT GTGGGCGGACTTCCTCCAACTGCTAATGAGCAGACCGTTGCCATATTCTTCAATGGAGTT ATGGCTGCTATTGGAGGAAACACAGCTGGTCCAGGTGATGCTGTTCCCAGTCAACCACCG CTATGGCCTAGGGGCTTCATTCAGCAGCATCCTTTGGATTGCAACATGATGAGAAACATT AATTTTTCTAATGCATCCTATGGTCCAACAACAATGTGGGCTCCCATTCAGACAGGAAAT ATAAGTTCCGAATCAACCATGCTACCAGCCACACAATCTGCAGTATATTGGAATCATTAT ATGAACTTTGTCAGGAATCCTCTTGGTTCAGTTCAAGGAAATCCTTTTCCAGATTCGTTT TCAGGTACAAATACTAGTACACCTTTGCAGGGTTCGAATACAATACCTTCAATACCTGTC AACTTGGAGTCCGCTGCTGAACATAGTGTTCAGGACATCAATAGTCCTATAAAGACTTCT GCCCCTGTTACAAAACCAAAGAAAACAAAGGAACAAAATTATACTGCTGCTGAAGACCTT CTACTTTGCACAACCTGGTTGCAAATTAGCAGTGATCCTATTGTCCACACTGGACAAAGG AAGAAGGGACTTTGGGCACGAATAGAAAAAAGGTACAACGAACAAAGGGGCGAGTACCCT TGTAGAATGAATCGAGCCCTTAGCAGCAGATGGGACAAGATTAGAGCAGATGTTGGTAAG TTCTCAGGCTGTTACGCAAGAGTGCTGCGAGAGAAACAAAGTGGTTTGACAGACGACGAT AAGACTTCCAAGGCGGCAACTTTGTTTGCACATGAGGAGAACAAACCATTTCATTTTATG CATTGCTGGCATAAGCTGAAGGGGGAACCTAAATGGGAGAGCATTTGTCAAGGACCTTTC CGAGGATTACATGGAAAAGCAATTGGATCTTCTGGTGGTCCTTTTATTGGTGTAGAAGAA TCAGATAGTGGGTCTGCTGGTTTGACTGGTAAACGGCCTCTCTGTCGTGATTCTTCTAAA TCAGAGAGAAAGAAGGCTGCGTCATCAACGACGACGGAATACTTAAGCCGTCTTCAAGAA TTAACTGAAAAACTAATTCAGCGCATCATAGAAAAGGGTGAGAAGAAATATAAGTACAAT GAACAGGACATGGAGCTAGAGAAGAAGAGGTTGGACTTGGAAGCAAAAAAATTAAGCATT CGTAAAAGGGAATTGAGATTAAAAGAACTAAGTATGGCCGAACAACAACTCGAGATGCTG GAGCGTACTCGTGAAGACGAGGTCGATCCAGAAGTATGGAGTATGATGAAGGAGCGCAAA AAACATTTGCAGCAGTTCATATTTAGTTTTTGCTAAATTTACTGTTGTTTAACATGTCGT GCTTCTGTTTCCATATCCGGTTTGCGAAGAAATTTATAAGTGCATTGTCTTATTTGCTTT CTAAAACATTATAAAGTTGTTGTATGCTTATGTCTTGCAAGACATGTCAGTGTTATTAAA GTTTGTAACGTTAATTCTGAAAGGAAATGGGCATTAACTATT