Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d007502_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:2:233393208:233398004:1 gene:Zm00001d007502 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotene isomerase2 description: carotene isomerase2
Sequence	ATGCCGCCGCTCGCCGCGCGCCTCTATGCCCCGCTTAACCTCGCCCCCGCCGTCCCAGCC GCCTCCCTTCGCCCCGCCACGCGGCTCTGCGCTGCGAGCGGGCCCCGCAACGAGAAGGCG GCGGCGGTGGCGGTCGCGGAGAAAGCGGGCGGCGAAGGTGGAGGAGGAGAGGACGAGGGC CCGTACGATGCGATCGTGATCGGGTCAGGGATCGGGGGCCTGGTGGCGGCGACGCAGCTC GCGGCCAAGGGCGCGCGGGTGCTGGTCCTCGAGAAGTACCTCATCCCCGGGGGAAGCTCC GGGTACTACCGCCGCGACGGGTTCACCTTCGACGTCGGCTCCTCCGTCATGTTCGGCTTC TCCGACAAGGGTAACTTGAATTTGATCACACAAGCATTGGAAGCAGTTGGGCGTAAGATG AGAGTTCTACCAGACCCTTCTACAGTTCATTTCCACCTACCCGGTGATCTCTCTGTCCTT GTGCATAGGAAGTATGAAGACTTCATCAACGAACTGGTCAGCAAATTCCCTCACGAGAAA GAAGGGATCCTTAAATTCTACGATACATGCTGGACGATCTTCAATTCACTAAATTCGTTG GAGCTGAAGTCTCTAGAGGAACCCCTTTATCTTTTTCGGCAATTTTTCCAGAAGCCTCGG GAATGCTTAACTCTAGCTTATTATTTGCCACAGAATGCTGGGGATATCGCTCGCAAGTTC ATAAAAGATCAGGAGCTACTCTCCTTCATAGATGCCGAGTGTTTTATTGTGAGCACAGTC AATGCCTTGCAAACACCCATGATAAATGCAAGCATGGTCTTGTGCGATAGGCACTTTGGA GGGATTAATTATCCAGTTGGTGGCGTTGGTGGTATTGCAATATCCCTGGCAGATGGCCTT GTTGAAAAGGGCAGCGAAATCCGTTACAAGGCGAATGTAACCAACGTTATTCTTGAAAAT GGAAAGGCTCTGAGCACTTCTGTACTCCAGGTTGGGGTGAGGTTATCAAATGGGAAGGAG TTCTTTGCTAAAACAGTGATATCAAATGCCACCAGATGGGACACGTTTGGAAAACTCGTG AAAGAGGAACTTCCAGAAGAGGAGAAAAACTTTCAAAAGAATTACGTTAAGGCACCATCA TTCCTTTCAATTCATATGGGTGTCAAAGCGTCAGTTCTGCCTGCTGGCACTGACTGCCAC CATTTTATACTTGAGGATAATTGGAATAATTTGGAAAAGCCTTATGGAAGCATATTTTTA AGTATCCCTACAGTTCTTGATCCATCATTAGCTCCCGAAGGACATCATATACTTCATATA TTTACTACAGCAGGCATAGAAGATTGGGAGGGTCTTTCTAGGAAGGAATATGAAGAGAAA AAAGAGGTGGTGGCCAATGAGATTATAAGAAGGCTTGAAAAGAAGTTGTTTCCTGGTCTT CAAGATTCAATAGTCCTCAAAGAGGTAGGCTCACCAAAAACACACCGAAGATTTCTTGCT CGAAATGACGGTACATATGGACCAATGCCACGGGGTAAACCGAAGGGATTACTGGCTATG CCTTTCAATACTACCTCAATAGATGGCCTTTACTGTGTCGGTGACAGCTGTTTCCCCGGG CAAGGTGTCATAGCTGTAGCATTCTCAGGGATCATGTGTGCTCACCGAGTTGCTGCAGAT ATTGGACTAGAGCAGAAGTCTCCAGTTCTAGATGCTGGTCTTCTTGGGCTACTCAGATGG CTGAGAACACTTGCATAG

Peptide Sequence

PEP ID	Zm00001d007502_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:2:233393208:233398004:1 gene:Zm00001d007502 transcript:Zm00001d007502_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotene isomerase2 description: carotene isomerase2
Sequence	MPPLAARLYAPLNLAPAVPAASLRPATRLCAASGPRNEKAAAVAVAEKAGGEGGGGEDEG PYDAIVIGSGIGGLVAATQLAAKGARVLVLEKYLIPGGSSGYYRRDGFTFDVGSSVMFGF SDKGNLNLITQALEAVGRKMRVLPDPSTVHFHLPGDLSVLVHRKYEDFINELVSKFPHEK EGILKFYDTCWTIFNSLNSLELKSLEEPLYLFRQFFQKPRECLTLAYYLPQNAGDIARKF IKDQELLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGGIAISLADGL VEKGSEIRYKANVTNVILENGKALSTSVLQVGVRLSNGKEFFAKTVISNATRWDTFGKLV KEELPEEEKNFQKNYVKAPSFLSIHMGVKASVLPAGTDCHHFILEDNWNNLEKPYGSIFL SIPTVLDPSLAPEGHHILHIFTTAGIEDWEGLSRKEYEEKKEVVANEIIRRLEKKLFPGL QDSIVLKEVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTSIDGLYCVGDSCFPG QGVIAVAFSGIMCAHRVAADIGLEQKSPVLDAGLLGLLRWLRTLA

Transcript Sequence

Transcript ID	Zm00001d007502_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:233393208:233398004:1 gene:Zm00001d007502 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotene isomerase2 description: carotene isomerase2
Sequence	ATGCCGCCGCTCGCCGCGCGCCTCTATGCCCCGCTTAACCTCGCCCCCGCCGTCCCAGCC GCCTCCCTTCGCCCCGCCACGCGGCTCTGCGCTGCGAGCGGGCCCCGCAACGAGAAGGCG GCGGCGGTGGCGGTCGCGGAGAAAGCGGGCGGCGAAGGTGGAGGAGGAGAGGACGAGGGC CCGTACGATGCGATCGTGATCGGGTCAGGGATCGGGGGCCTGGTGGCGGCGACGCAGCTC GCGGCCAAGGGCGCGCGGGTGCTGGTCCTCGAGAAGTACCTCATCCCCGGGGGAAGCTCC GGGTACTACCGCCGCGACGGGTTCACCTTCGACGTCGGCTCCTCCGTCATGTTCGGCTTC TCCGACAAGGGTAACTTGAATTTGATCACACAAGCATTGGAAGCAGTTGGGCGTAAGATG AGAGTTCTACCAGACCCTTCTACAGTTCATTTCCACCTACCCGGTGATCTCTCTGTCCTT GTGCATAGGAAGTATGAAGACTTCATCAACGAACTGGTCAGCAAATTCCCTCACGAGAAA GAAGGGATCCTTAAATTCTACGATACATGCTGGACGATCTTCAATTCACTAAATTCGTTG GAGCTGAAGTCTCTAGAGGAACCCCTTTATCTTTTTCGGCAATTTTTCCAGAAGCCTCGG GAATGCTTAACTCTAGCTTATTATTTGCCACAGAATGCTGGGGATATCGCTCGCAAGTTC ATAAAAGATCAGGAGCTACTCTCCTTCATAGATGCCGAGTGTTTTATTGTGAGCACAGTC AATGCCTTGCAAACACCCATGATAAATGCAAGCATGGTCTTGTGCGATAGGCACTTTGGA GGGATTAATTATCCAGTTGGTGGCGTTGGTGGTATTGCAATATCCCTGGCAGATGGCCTT GTTGAAAAGGGCAGCGAAATCCGTTACAAGGCGAATGTAACCAACGTTATTCTTGAAAAT GGAAAGGCTCTGAGCACTTCTGTACTCCAGGTTGGGGTGAGGTTATCAAATGGGAAGGAG TTCTTTGCTAAAACAGTGATATCAAATGCCACCAGATGGGACACGTTTGGAAAACTCGTG AAAGAGGAACTTCCAGAAGAGGAGAAAAACTTTCAAAAGAATTACGTTAAGGCACCATCA TTCCTTTCAATTCATATGGGTGTCAAAGCGTCAGTTCTGCCTGCTGGCACTGACTGCCAC CATTTTATACTTGAGGATAATTGGAATAATTTGGAAAAGCCTTATGGAAGCATATTTTTA AGTATCCCTACAGTTCTTGATCCATCATTAGCTCCCGAAGGACATCATATACTTCATATA TTTACTACAGCAGGCATAGAAGATTGGGAGGGTCTTTCTAGGAAGGAATATGAAGAGAAA AAAGAGGTGGTGGCCAATGAGATTATAAGAAGGCTTGAAAAGAAGTTGTTTCCTGGTCTT CAAGATTCAATAGTCCTCAAAGAGGTAGGCTCACCAAAAACACACCGAAGATTTCTTGCT CGAAATGACGGTACATATGGACCAATGCCACGGGGTAAACCGAAGGGATTACTGGCTATG CCTTTCAATACTACCTCAATAGATGGCCTTTACTGTGTCGGTGACAGCTGTTTCCCCGGG CAAGGTGTCATAGCTGTAGCATTCTCAGGGATCATGTGTGCTCACCGAGTTGCTGCAGAT ATTGGACTAGAGCAGAAGTCTCCAGTTCTAGATGCTGGTCTTCTTGGGCTACTCAGATGG CTGAGAACACTTGCATAGGACGGTATATTAGACAAAGTGGGAAAATGGACCTCATCTTCT TTCAAAAGGCTGATGTTTAACTAGAGTTCGGATTCTGCACTATCATCTGAGTGGCCGGGT TCTGTCATGGGTGTGCCGTGTACAATCGAGGCTGGGCTAGCAGCATGTGGTCGCCCATCA TGAGCACCTGCAGATAATTGTGCTGGGTTTATATAGTAGTAATCCTAATTGGCAACCCAA GTGTCTGAAGCTGCGCGTGCTTGACACGGTACGGTGCGCTCCCGCGCATATAGAAAACAA ATTGTCAATTGCGATGTTGCATCACTTAGGTACAAGTTACATGGTATGCCAAACAGTGTA ATTGTTCTCCAACTAGATTCTTCAAAGACACTTTCTCAATTGTACCAGGATACAGGTTGC ACGGCATAGTGAATTGTGTCAAAAATTTTGGATCACAATGATGTAGCAGCTCATGGTACA GATTAAATCAGATAATCAGTTAGCAAGATTCCCGGTG