Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007307_T014
CDS Infomation

cds chromosome:B73_RefGen_v4:2:227404317:227408852:1 gene:Zm00001d007307 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable magnesium transporter NIPA4
Sequence

ATGTACGTACATGTGTTTTGTACAGTGATTGTAGGTGAAATTGCTAATTTTGCTGCTTAT
GCATTCGCTCCTGCTATTCTTGTCACTCCTCTTGGTGCACTCAGTATAATCATCAGCGCT
GCACTTGCACATGCCATTCTACAGGAGAAACTGCACACATTTGGTATACTTGGTTGTGTT
CTCTGTGTTGTTGGATCTATCACAATTGTGCTCCATGCCCCACAAGAGCGTGACATTGAT
TCTGTAAAGGAAGTTTGGGATCTTGCAACTGAACCAGCTTTCCTTTGCTATGCGGCTATA
GTAGTTGCAGCAGCCTTAGTGCTTATATATTTTGTTGTCCCTCATCATGGACAAACAAAC
ATAATGGTGTACATTGGAGTATGTTCTCTTCTGGGATCACTCACGGTTATGAGTGTAAGA
GCTCTTGGAATTGCCTTGAAGCTAACATTGTCAGGAACAAACCAATTATTCTATCCTCAG
ACTTGGGCCTTTGCACTGATTGTAGCTACCTGTGTGAGCACCCAGATTAACTATCTAAAT
AAGGCATTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTATGTGATGTTTACT
TCACTAACAATTATAGCCAGTGTGATAATGTTCAAGGATTGGGACCATCAAAATCCAACA
CAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCAC
AAGACAAAAGATATGACTGATAGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCAT
GCTAGTCAGAATGCGTTTGCAATTGAAGTGATGCCACTAAAATGTCAAGATTATATAGAT
GACGAGACCTTGACGTTATCACTTCCCAAGGTTGAAAATGGTTACCTAAAGGAAGAGTAT
CTTCTTAGATACAAGGACTCGAGTATTGTCTGA

Peptide Sequence

PEP ID

Zm00001d007307_P014
PEP Infomation

pep chromosome:B73_RefGen_v4:2:227404317:227408852:1 gene:Zm00001d007307 transcript:Zm00001d007307_T014 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable magnesium transporter NIPA4
Sequence

MYVHVFCTVIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHAILQEKLHTFGILGCV
LCVVGSITIVLHAPQERDIDSVKEVWDLATEPAFLCYAAIVVAAALVLIYFVVPHHGQTN
IMVYIGVCSLLGSLTVMSVRALGIALKLTLSGTNQLFYPQTWAFALIVATCVSTQINYLN
KALDTFNTAVVSPIYYVMFTSLTIIASVIMFKDWDHQNPTQIVTEMCGFMTILSGTFLLH
KTKDMTDSPGQSLLTRRPKHASQNAFAIEVMPLKCQDYIDDETLTLSLPKVENGYLKEEY
LLRYKDSSIV

Transcript Sequence

Transcript ID

Zm00001d007307_T014
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:227404317:227408852:1 gene:Zm00001d007307 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable magnesium transporter NIPA4
Sequence

GGAGGGCCGCCGACTCCGGCGTCCGCGCGGGTGAGTGAGGGCTCTGTTCGCCGCGTCCGT
CGGTGGATGCCCGCTCTGGTGTTTGGATCTCCTTCCAGGTCGGCCGGTGTGTGCCGTTTG
CGCTGGATTGGCTGGTTGGTTCGCACGACGGCGAGACGGGTCGAGTTGTTGGGCTGTGTG
CCAGCCATGTGGTTGCTTAGCTGGCTACTGGGAATCCGGTTGAAGCTTTGAAATTGATTT
CTTAATTTTTGGGTCCCCTTTTGCGACGCGGTTTCTGGTTGGTGAGAGGGATCTGCAGCA
GTAGAAAAAAATGTGGTGGGCTGTTCTTCCTGATGTTAAACTGGAAGTCGTCGAGAAATT
ACTTTCATGGTGGAAATTTGAGGATTCTGATCATAGTTTTATTTCCTGATTTTGTTTGTC
AGACGAGCTAAGTTGATTTCGGAGAAAATATTTATTTCCTTGGCCGTGGTAGATTTGGTC
ACGGCAGAAATTGACCACCATGAGAGCAATGTTCACTTTGATTGGTGGAGAAAAAGGTTG
CAATCATTGACGGCGAGGCATGTCGAGTTGTCAACTTGGTGTCTATGCTGATGCAAAAAG
GTTTGCTTGCATAAAGTCCAATGGAGCCAAGGGTGCTTGTTTCTTGTTTGTGCCCTTCAG
TTGCAACCTGCAAAGGAGGCTCGCTCAACTAGTAAAAAACAAAAACGTTTGTTTGTCACT
TTTGTTTTACATTTGCAATGGCTTTTTTGAAACAAGCTGAGTGAATCTTTGTTTTTGTTA
ACAGTCTATGCATCATGACTGATTCTTCGTCTGGCGAATATACTGATATTATTCATTTGT
ATTTCATAAATTTGCCCTTTTGCTTTCCTCAAGTTTAGTGCTAAGCATAATTAGATGTTT
TATGTACATAAACCAGGATATGGCGGGTTTTCTTATTTAGTGGAGCCTCTTTGGTGGATA
GGCATGATTTCTAGTAAGTTTTCTTTCCAGTCTTATTAAATAATGACCTTTTATAATACT
AAACTCCTCTAGTTCGTTTGTTGTTTATATGTATGCAATTCTTTTCTACATTGGGGTTAT
TGGTGTTTCGCCCCAAATATACAGCATATCATGTTCCATTTGAATATTTCCCCATTATTA
TTCTTGCTTGGCTTATCAATGGTTCTCACCCTGCTTTGCTAACACTGTCTATGTTGATAG
TCCTTATAGAAAACAAACACACAAAAAAACATATTGCTGAGAATTTGAGATACATATGGC
CGGTTTGTTTTAGGGAGAAGTAAATATCTCATTCAAGAAAGCAGCTTTGATAGTTTCATA
GGTGCCTGCAGATATAGAATTATAGATTTTAGTTTTTTTATTGGGCCAGTACAGGCCCAT
GAAAAACATCAGTACAATTTAGATCTTATCATCTGAATGGAACATTCATTGCTAACAATT
TGAGGCTGTTTTGTTGAACTTAATAGGAAGTGGATGGAATGACATTATGTAGTGTACTAA
GTTTGCTAAGTGATTTATGTATGCACAGAACTGCTGCTACAACCTTTTTTAGGAGAACAT
GTTACTGAAGCTTTCTGAATGAAAGAAACTTGAAATATGTACGTACATGTGTTTTGTACA
GTGATTGTAGGTGAAATTGCTAATTTTGCTGCTTATGCATTCGCTCCTGCTATTCTTGTC
ACTCCTCTTGGTGCACTCAGTATAATCATCAGCGCTGCACTTGCACATGCCATTCTACAG
GAGAAACTGCACACATTTGGTATACTTGGTTGTGTTCTCTGTGTTGTTGGATCTATCACA
ATTGTGCTCCATGCCCCACAAGAGCGTGACATTGATTCTGTAAAGGAAGTTTGGGATCTT
GCAACTGAACCAGCTTTCCTTTGCTATGCGGCTATAGTAGTTGCAGCAGCCTTAGTGCTT
ATATATTTTGTTGTCCCTCATCATGGACAAACAAACATAATGGTGTACATTGGAGTATGT
TCTCTTCTGGGATCACTCACGGTTATGAGTGTAAGAGCTCTTGGAATTGCCTTGAAGCTA
ACATTGTCAGGAACAAACCAATTATTCTATCCTCAGACTTGGGCCTTTGCACTGATTGTA
GCTACCTGTGTGAGCACCCAGATTAACTATCTAAATAAGGCATTGGATACATTTAATACA
GCAGTAGTCTCACCAATATATTATGTGATGTTTACTTCACTAACAATTATAGCCAGTGTG
ATAATGTTCAAGGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGC
TTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATAGT
CCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGCGTTTGCAATT
GAAGTGATGCCACTAAAATGTCAAGATTATATAGATGACGAGACCTTGACGTTATCACTT
CCCAAGGTTGAAAATGGTTACCTAAAGGAAGAGTATCTTCTTAGATACAAGGACTCGAGT
ATTGTCTGATAGATAATTCTTCGCCAACATTTGACGGGAAGCTCTTGAGAATCATTCTGC
TTCCAGACATGATTGATTGATGTAGAACTGGAGTTGGCAGTTTTACCTCAACCTGGCCTT
GGATAGATTGATATTACAGATTGTAAGTTGTCAACTGTGGTTTGTCTACATCTGGATGAT
GTTTTGAGGGAAGGAGCATGCCAGAAGGATGCCACATTGAGGCCAATTAAGTGCTAGTCA
TCTAGGAATTGTGGTTCCGGAAAAGAATTTGAAGTGTACTTAGATACAATGGTGTCACCA
ACTATACTCTTTTCCCCCCTCTTTTCTCTCTCATTTTAGAACGCCATGTGATAGCTGCAA
TGTGATCTTATCTGATTCATAGGACGACGCCATATAGAAATGTCAAGCATCGTTTTTTCC
TGTAATTACATCAAATTGGCCAGTTGTCATTGTGTATACTTAGTCTATGTAAAGTATATC
AATTCATACTTTATGACAAGGGACCCTTAGGATAAACTCTTGATCATTCTAATTCATATT
TCTCACATTGC