Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007290_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:226920403:226923007:-1 gene:Zm00001d007290 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase

Sequence

ATGCGAGACTTTCATTGTGTTTTGCAACAGGAGCACAGGCAGGAGAGAGGCGAGATGCGA
AGGCTAGAGGTCCTTGCATGGTCTTGCGCCATTGCCACGGTGGTGCTAGCTCTCGCGCCG
GGTGTGGCTGCGGCCAGCGAAGCAACGCATGACGTGGACGACGTCAGCCTCGCCGTCTCA
AGGATCGGCACCGCAGCACCGTCGCCGACCAGCAACGTCACGGCGATCTGCCTGTCGACG
CCGTACCCGAGCGCGTGCGAGACGGCGCTCTCGTCGCCGGCGCAGGGCTCGTCCGGCACG
GACGACCCGTTCGCGACGTCCGTGCACTACGCGATGGCCCGGGTCGCGTCGGCGCGCGCT
GTGGCGCGGAACCTCTCGGCCGCGCATCTCCGCGGCGCCCGCCCGCCGCCGGGCGTGCAG
GACTGCGCCGAGCTGCTCGACATCAGCCTCGACCAGCTGGGCGACGCGCTCGCGGCGGCC
GCGCGCGACGCGGACGGGGTGACCACGTGGCTGAGCGCCGCGCTGACGAACCAGGCCACG
TGCGACGACAGCCTCGCGGCCGACCCGGACTCCGCGGGGCGCGGGGCCATCCGCGCGCGC
CTCTCCGCGCTCACCCAGTTCATCGCCACGGCGCTGGCTCTGCACGTCAACAAGTCCAAG
GCTCACCACAGCGGCGGCGGCTCACCGTCGTCAGGCTCGCTGCCGACTCCAGCATCGCCG
TTCCCGTCCTGGGTAACCCAGCAGGACAGGAAACTCCTGGAGTCGTCCCACGCGGGAGCC
AGTGGCGGCCTCGCGGTGGACGCTGTGGTGGCGCTGGACGGCAGCGGGACGCACCGGACC
ATTAACGAGGCGATCGCGGCCGTGACGACGACCGCGGCGAACGGCGGCGGCGCGAGGAAG
GTGATACACGTGAAGGCCGGGCGGTACGAGGAGAGCGTGACCGTCTCCAGCAAGCAGAAG
AACGTGATGCTTATGGGCGACGGCAAGGGAAAGAGCGTCATCGTCGGACACAAGAGCGCC
GGCGAAGGTTACACCACCTACGCCTCCGCCACCGTCGCTGCGATGGGCTCGGGCTTCATC
GCCAAGGGCCTCACCATCGTGAACAGCGCCGGGCCAGGGAAGGGGCAGGCCGTGGCGCTG
CGCGTCGGCGGCGACCTCTCCGTGGTGTACCAGTGCGCCATCCAGGCGTACCAGGACACG
CTCTACGTGCACTCCGGCCGCCAGTTCTACGCCGACGACGACATCGCCGGCACGGTGGAC
TTCATCTTCGGCAACGCCGCCGTGGTGCTCCAGAGCTGCGACATCCAGGCCCGGAGGCCG
AGCCCCGGGCAGAAGGACACGGTGACGGCGCAGGGCCGCACCGACCCCAACCAGAACTCC
GGCATCTCCATCCACCGCTGCAGGATCACCGGCGCGCCGGACCTCGGCGGCACGCCGGTG
TACCTGGGCCGTCCGTGGCAGAGGTACTCGCGGACGGTCGTCATGGAGAGCTTCCTCGAC
CGCTCGGTCTCGCCGGCCGGGTGGCTCGAGTGGTCGGGCCAGTTCGCTCTGAGCACGTTG
TACTACGGGGAGTACGGCAATACCGGGCCTGGTGCCGGAACGAGTCGGCGAGTGACGTGG
ACTGGGGTGCACACGTCACTGTCCAAGTCAGATGCCGCGAGGTTTACCGTGGCGGAATTC
ATCCTCGGAGACGAATGGTTGGGTGGCACTGGAGTCAACTATATTTCAGGACTGTGA

Peptide Sequence

PEP ID

Zm00001d007290_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:226920403:226923007:-1 gene:Zm00001d007290 transcript:Zm00001d007290_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase

Sequence

MRDFHCVLQQEHRQERGEMRRLEVLAWSCAIATVVLALAPGVAAASEATHDVDDVSLAVS
RIGTAAPSPTSNVTAICLSTPYPSACETALSSPAQGSSGTDDPFATSVHYAMARVASARA
VARNLSAAHLRGARPPPGVQDCAELLDISLDQLGDALAAAARDADGVTTWLSAALTNQAT
CDDSLAADPDSAGRGAIRARLSALTQFIATALALHVNKSKAHHSGGGSPSSGSLPTPASP
FPSWVTQQDRKLLESSHAGASGGLAVDAVVALDGSGTHRTINEAIAAVTTTAANGGGARK
VIHVKAGRYEESVTVSSKQKNVMLMGDGKGKSVIVGHKSAGEGYTTYASATVAAMGSGFI
AKGLTIVNSAGPGKGQAVALRVGGDLSVVYQCAIQAYQDTLYVHSGRQFYADDDIAGTVD
FIFGNAAVVLQSCDIQARRPSPGQKDTVTAQGRTDPNQNSGISIHRCRITGAPDLGGTPV
YLGRPWQRYSRTVVMESFLDRSVSPAGWLEWSGQFALSTLYYGEYGNTGPGAGTSRRVTW
TGVHTSLSKSDAARFTVAEFILGDEWLGGTGVNYISGL

Transcript Sequence

Transcript ID

Zm00001d007290_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:226920403:226923007:-1 gene:Zm00001d007290 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase

Sequence

GCAGCAGCTATGCGAGACTTTCATTGTGTTTTGCAACAGGAGCACAGGCAGGAGAGAGGC
GAGATGCGAAGGCTAGAGGTCCTTGCATGGTCTTGCGCCATTGCCACGGTGGTGCTAGCT
CTCGCGCCGGGTGTGGCTGCGGCCAGCGAAGCAACGCATGACGTGGACGACGTCAGCCTC
GCCGTCTCAAGGATCGGCACCGCAGCACCGTCGCCGACCAGCAACGTCACGGCGATCTGC
CTGTCGACGCCGTACCCGAGCGCGTGCGAGACGGCGCTCTCGTCGCCGGCGCAGGGCTCG
TCCGGCACGGACGACCCGTTCGCGACGTCCGTGCACTACGCGATGGCCCGGGTCGCGTCG
GCGCGCGCTGTGGCGCGGAACCTCTCGGCCGCGCATCTCCGCGGCGCCCGCCCGCCGCCG
GGCGTGCAGGACTGCGCCGAGCTGCTCGACATCAGCCTCGACCAGCTGGGCGACGCGCTC
GCGGCGGCCGCGCGCGACGCGGACGGGGTGACCACGTGGCTGAGCGCCGCGCTGACGAAC
CAGGCCACGTGCGACGACAGCCTCGCGGCCGACCCGGACTCCGCGGGGCGCGGGGCCATC
CGCGCGCGCCTCTCCGCGCTCACCCAGTTCATCGCCACGGCGCTGGCTCTGCACGTCAAC
AAGTCCAAGGCTCACCACAGCGGCGGCGGCTCACCGTCGTCAGGCTCGCTGCCGACTCCA
GCATCGCCGTTCCCGTCCTGGGTAACCCAGCAGGACAGGAAACTCCTGGAGTCGTCCCAC
GCGGGAGCCAGTGGCGGCCTCGCGGTGGACGCTGTGGTGGCGCTGGACGGCAGCGGGACG
CACCGGACCATTAACGAGGCGATCGCGGCCGTGACGACGACCGCGGCGAACGGCGGCGGC
GCGAGGAAGGTGATACACGTGAAGGCCGGGCGGTACGAGGAGAGCGTGACCGTCTCCAGC
AAGCAGAAGAACGTGATGCTTATGGGCGACGGCAAGGGAAAGAGCGTCATCGTCGGACAC
AAGAGCGCCGGCGAAGGTTACACCACCTACGCCTCCGCCACCGTCGCTGCGATGGGCTCG
GGCTTCATCGCCAAGGGCCTCACCATCGTGAACAGCGCCGGGCCAGGGAAGGGGCAGGCC
GTGGCGCTGCGCGTCGGCGGCGACCTCTCCGTGGTGTACCAGTGCGCCATCCAGGCGTAC
CAGGACACGCTCTACGTGCACTCCGGCCGCCAGTTCTACGCCGACGACGACATCGCCGGC
ACGGTGGACTTCATCTTCGGCAACGCCGCCGTGGTGCTCCAGAGCTGCGACATCCAGGCC
CGGAGGCCGAGCCCCGGGCAGAAGGACACGGTGACGGCGCAGGGCCGCACCGACCCCAAC
CAGAACTCCGGCATCTCCATCCACCGCTGCAGGATCACCGGCGCGCCGGACCTCGGCGGC
ACGCCGGTGTACCTGGGCCGTCCGTGGCAGAGGTACTCGCGGACGGTCGTCATGGAGAGC
TTCCTCGACCGCTCGGTCTCGCCGGCCGGGTGGCTCGAGTGGTCGGGCCAGTTCGCTCTG
AGCACGTTGTACTACGGGGAGTACGGCAATACCGGGCCTGGTGCCGGAACGAGTCGGCGA
GTGACGTGGACTGGGGTGCACACGTCACTGTCCAAGTCAGATGCCGCGAGGTTTACCGTG
GCGGAATTCATCCTCGGAGACGAATGGTTGGGTGGCACTGGAGTCAACTATATTTCAGGA
CTGTGAGGTGAATGTCTCGCCTCCTTGTCCGTATATGTGTACGTAATTCAGTGATTTTAA
TAATAACTAAATAAAAGATTCCTGGGT