Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007228_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:225207322:225209334:1 gene:Zm00001d007228 gene_biotype:protein_coding transcript_biotype:protein_coding description:Omega-3 fatty acid desaturase

Sequence

ATGGCACGCCTGCTCCTCTCCGTCTCAGTCCCCATGTCCGCTAGCAGCAGCCGCCGCATT
GTGGTTCCTGGTACCGCGCGGCACCGAGGCCGCAGCGGCGTCTGTGTCGCTGTGCCCGCC
ACCTCCACCGCCACCGCCACCCAACAAGAATTTGACCCCGCGGCGGCGCCACCGTTCGGG
CTGGGCGACATCCGCGCCGCCATCCCCAAGCACTGCTGGGTGAAGGACCCCTGGCGCTCC
ATGGGCTACGTGGTGCGCGACGTGGTCCTGGTGCTGGGTCTCGCCGCCGCCGCGGCGCGC
CTCGACAGCTGGCTCGTCTGGCCGCTCTACTGGGCGGCACAGGGCACCATGTTCTGGGCG
CTCTTCGTGCTGGGACACGACTGCGGCCACGGCAGCTTCTCCAACAACCCCAGACTCAAC
AGCGTGGTCGGTCACATTCTGCACTCCTCCATCCTGGTGCCATACAACGGCTGGCGGATT
AGCCACAGGACGCACCACCAGAACCACGGCCACGTGGACAAGGACGAGTCATGGCATCCC
CTCCCCGAGCGTCTGTTCAAGAGCCTGGACAGCGTCGTCCTGATGCTGCGCTTCAGGCTG
CCCTTCCCTATGCTCGTCTACCCATTCTACCTGGCCAACAGGAGCCCCGGCAAGTCCGGC
TCCCATTTCCACCCGGCCAGCGACCTCTTCCAGCCCAGCGAGAGCAAACAAGTGCTCACC
TCCACGGCGTGCTGGCTCGCCATGGTCGCACTCCTAGCTGGCCTCGCCTTCCTCATGGGC
CCTCTGCAGATGCTCAAGCTCTACCTGGTCCCCTACTGGGTTTTTGTCATGTGGCTCGAC
TTCGTCACCTACCTGCATCATCACGGACACAATGACAAGCTTCCATGGTACCGAGGAAAG
GTAGAATGGACCTATCTTCGGGGTGGCCTGACAACGCTCGACCGGGACTACGGGTGGATC
AACAACATCCACCATGACATTGGGACTCATGTCATCCACCATCTCTTCCCGCAGATCCCA
CACTACCATCTCATAGAGGCAACAGAGGCAGCCAAGCCGGTGCTGGGAAATTACTACAGA
GAGCCGCAAAAGTCTGGCCCTCTCCCCTTGCATCTACTTGGTGATCTGGTTCAGAGCTTG
AGGCGTGACCACTATGTCAGCGACACAGGGGATGTCGTCTACTACCAAACTGACCCCACC
ATTAGCTGTTCTGGTCCATTCACTTGA

Peptide Sequence

PEP ID

Zm00001d007228_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:225207322:225209334:1 gene:Zm00001d007228 transcript:Zm00001d007228_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Omega-3 fatty acid desaturase

Sequence

MARLLLSVSVPMSASSSRRIVVPGTARHRGRSGVCVAVPATSTATATQQEFDPAAAPPFG
LGDIRAAIPKHCWVKDPWRSMGYVVRDVVLVLGLAAAAARLDSWLVWPLYWAAQGTMFWA
LFVLGHDCGHGSFSNNPRLNSVVGHILHSSILVPYNGWRISHRTHHQNHGHVDKDESWHP
LPERLFKSLDSVVLMLRFRLPFPMLVYPFYLANRSPGKSGSHFHPASDLFQPSESKQVLT
STACWLAMVALLAGLAFLMGPLQMLKLYLVPYWVFVMWLDFVTYLHHHGHNDKLPWYRGK
VEWTYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGNYYR
EPQKSGPLPLHLLGDLVQSLRRDHYVSDTGDVVYYQTDPTISCSGPFT

Transcript Sequence

Transcript ID

Zm00001d007228_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:225207322:225209334:1 gene:Zm00001d007228 gene_biotype:protein_coding transcript_biotype:protein_coding description:Omega-3 fatty acid desaturase

Sequence

GCCGAAGAGAGGAGGAGAGCCAAGCGGCGACTGGACCTGGAGAGCCGGCATGGCACGCCT
GCTCCTCTCCGTCTCAGTCCCCATGTCCGCTAGCAGCAGCCGCCGCATTGTGGTTCCTGG
TACCGCGCGGCACCGAGGCCGCAGCGGCGTCTGTGTCGCTGTGCCCGCCACCTCCACCGC
CACCGCCACCCAACAAGAATTTGACCCCGCGGCGGCGCCACCGTTCGGGCTGGGCGACAT
CCGCGCCGCCATCCCCAAGCACTGCTGGGTGAAGGACCCCTGGCGCTCCATGGGCTACGT
GGTGCGCGACGTGGTCCTGGTGCTGGGTCTCGCCGCCGCCGCGGCGCGCCTCGACAGCTG
GCTCGTCTGGCCGCTCTACTGGGCGGCACAGGGCACCATGTTCTGGGCGCTCTTCGTGCT
GGGACACGACTGCGGCCACGGCAGCTTCTCCAACAACCCCAGACTCAACAGCGTGGTCGG
TCACATTCTGCACTCCTCCATCCTGGTGCCATACAACGGCTGGCGGATTAGCCACAGGAC
GCACCACCAGAACCACGGCCACGTGGACAAGGACGAGTCATGGCATCCCCTCCCCGAGCG
TCTGTTCAAGAGCCTGGACAGCGTCGTCCTGATGCTGCGCTTCAGGCTGCCCTTCCCTAT
GCTCGTCTACCCATTCTACCTGGCCAACAGGAGCCCCGGCAAGTCCGGCTCCCATTTCCA
CCCGGCCAGCGACCTCTTCCAGCCCAGCGAGAGCAAACAAGTGCTCACCTCCACGGCGTG
CTGGCTCGCCATGGTCGCACTCCTAGCTGGCCTCGCCTTCCTCATGGGCCCTCTGCAGAT
GCTCAAGCTCTACCTGGTCCCCTACTGGGTTTTTGTCATGTGGCTCGACTTCGTCACCTA
CCTGCATCATCACGGACACAATGACAAGCTTCCATGGTACCGAGGAAAGGTAGAATGGAC
CTATCTTCGGGGTGGCCTGACAACGCTCGACCGGGACTACGGGTGGATCAACAACATCCA
CCATGACATTGGGACTCATGTCATCCACCATCTCTTCCCGCAGATCCCACACTACCATCT
CATAGAGGCAACAGAGGCAGCCAAGCCGGTGCTGGGAAATTACTACAGAGAGCCGCAAAA
GTCTGGCCCTCTCCCCTTGCATCTACTTGGTGATCTGGTTCAGAGCTTGAGGCGTGACCA
CTATGTCAGCGACACAGGGGATGTCGTCTACTACCAAACTGACCCCACCATTAGCTGTTC
TGGTCCATTCACTTGACTAATTGAGGGAGGCTGGAAGTTATGCGAAACACAAGGATCAGA
GGCTACCGGAGAGATCTGATCTATGAGCCACACACTTGCATATAACAATAAGTCAATCAT
TCTTTGGGCAAAACAAGCTACAGTACAATTTCCAGTGCTTTACTATCAGGACTCATTAGC
ACATGCTTAGCTGGTACTGTTGCAAGAAAGCAATGTGCAGTACCTCCGCTTATTGCTGTC
CTCACATATGCAGTACATTATTTGCAAAATGTAAGTGGACTACCTGCGCCTTAGATCTCT
CTGCAAAAGTTGGAGACATGGGGCTTTTCCTGACAAATCATGTATTGCTGCTTGATGACA
AAATGAGAATATTCTGACAAAATAAATAATGCATGGAAATAGAAAACGAGGTACCAAGTC
TTCTTTCTGGTCC