Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007200_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:2:224484791:224490009:1 gene:Zm00001d007200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Centromere protein-like
Sequence

ATGAGAAGGTTCTTTTTCTTCGGGTCCCCTGCTGCAAACGCTGGTGAGGGAGCCGGGCAA
CCGGTCAATGATAGCAGGACTGGACATAGAAAGACAGATGAGGGAAAGGACATCTCCACC
GCGAGATTGTCGAGATCCAGAAGCCGTCGTCAGAAGCGGAATAAGGAGGAACCGGCTAAC
CCCAAACAACTCAGGAGGTCCATGTCCTTCTCATCCCCGGCCAGAAGCAGCTGTGTGGAG
GAACGATGCTTTAGCTTCTCGGGTGATGTTCCGTGCTCTTTGTACGATGAATCTGATGCA
CCCCACCATGCCAAAGATGTCGCTCCCGACATGTGGTCTCCAGAAGGGAATCCGTTCTCT
AGAGAATATGCAATAAGAACCCCGAAAGATCATTCTGCCATGGAAAATGATTCTCCTCGT
TCAAAATACTGTTCTTGCTCAGCAGGGCACTCTCCTGTTAGCTCTCCTGTCGCTATACAG
TGCAGATCAACAAGACTAGGCAATTTATTAAACAGGAACGAAGTACTAGATCGTTACATT
GATAGAGGGCATGGAGATGCAATCGTAGATGAGAAACAGAAGCAGTGCGTACCTACGGTT
TCTAATTTGGGAAGGCCACCTCGACCCCACTCTACAGTACCATCCATACCGAGACCATTC
AAAGAGACAACGGAAAGCTACCCAGATGTGGACTTAAACGACGCCTTCCTTTGGCGACTT
GCTCAAGAGGGTATAGGAGATACCCACAAGATTACAACTATGTGCAGTGCATCTAGACGC
CACATAAACATGTCAGATGCTTCTGAAAGAGAAAGTGCAACAACTGTTGAAGATATTTAT
GAAGATTTGCAAGATGTGAGACTTCCAAATGTTATCTGCCCCTCCACTTGTCCTAACTCA
GCGGTAGAAGAAACTGATGACATGTTGCTTCAAAGAGTTAAGGAAGTTGAGTCAAGGTTT
ACTATTCCTTGTGGAGATGAATATGAATTTAGCATGCTCAGGTATAAATCATCAACCTCA
AATGACATGTTTCAGTTGATCCAGCAATTGACTGAAGATAGGAAACAGTTAGCATATGAA
TTGTCTTCAGAGATCAAAGCACGTGTTACAGAAAGATTTGCTGCCAAAGAGCAATACAAA
CAATTAAAGAAAGAATTGGACAACAGAACTAGAAGGCTGGAGAAGGAGAAGAGTGAAGTA
CAAACTACACTGGAAGGAGAGATGGATAGAAGGTCAGATGATTGGTCTATCAGGCTATCA
AGATTTCAATCTGAAGAAGAGAGACTACATGAACGGGTGAGAGAACTTGCAGAGCAGAAT
GTGTCATTTCAGAGAGAAGTTACTTCTCTTGGAGCAACTAAGGCTGAAGCTTTAATGAAA
GCTGCGAGTTTGGAAACGCAAAATAGCAAACTAAATGACGATCTAGAGAAACTAAAAAAT
GAGCATGAGAAACTGCATTATTCCTCAACAGATTTGCAGGCTCGCTTTGCTGAGATTGTA
GAGGAAAGGGACCACATCCGAGAATATTTGAAGGCCAAGGAGGGAGAGAACAAAGCATTG
CACAAAGTAATTGCAAGACTACAAACAACATGTAATGAGCAGGAAAGAACAATCACAGGC
ATGAGACAAGGATGCATAGACGAATTAGGTAGGAAATTTGTTGAGTACAGCACCAATGAT
AAAACGAGAAAATTACAAATGGAACTTATTAGACTGACTGGGGTGGAGCAAAAGTTGAGA
GGTGAAATTCGATCTTGTAATCTTGAAGTAAAATCTCTCAGACAAGAGAACATTGCACTC
TTAAATCGTTTACAAGGTGCTGGAAATGGAGCAAGCTTCTCCTCGATTCGACTTGATCAG
GAGCTTCAAGCTAGGGTGGACAACCTGCAAATGCAAGGCTTGTCACTACTTGATAAGATT
AGCCAACTTTGTACCAAATTGCTGGATCTGATGAAACATAAGAGACATGAAAATGAATAT
TTGTGTGGCAATGATGTGTCAACATTCAGTGATTACATATTTGAGTACCAGAGCATCAAA
GGAGGAATTGAAGGTCTGAAGCTAAGTTTGAAAGCAATAAATTCTATACTAGCTGAAAAG
CAAAATGCTAAAGAAAAATCTGGTGAAATTGTAGCTGAAGGTAGTCCTTCCAAAGATCAA
ACGGATGATTTTGGACTCAAGCTGAAAGAAGAGGCTATGCTGAATAGAGTACTGAAGGAG
GCAGTCTTGTCAAAAGAAGTTGCCATTGAACAATTGCAATCTGATCTGGCATCTTCACTT
CGCATCCAAGACGTTATGAGAAACGAGATCCAGAGGGTTCAGGATGAGCTTTCTTGCATA
ACCCACAAAGCTAAGCAGTTGGAGCTTCAGGTATCCAAGAAGGATGAGTCAATCGATGAG
ATCCAACAGGATTTCCAGGAATCTGCAAAGGAGCTGGCTGCTCTTCGTGGAACACTGAAA
ACAGTGACGGAGGAGAGGGACCTGTCGTGGCAGGAGGCGAAGCAGCTGAGACGAAACATC
AGCATCATGCAGGACGAGGTTGTATCGCTGAAGAAGAAGATCGAAGCCCTGGACGAAGAC
ATACTTGTGAAGGAGGGGCAGATCACAATATTGCAGGACAGCATCGACAAGCCGTTCGAC
ATCATCTGCAGCCCAAGATCGATGAGGGAGTTCGATATGGCGTGA

Peptide Sequence

PEP ID

Zm00001d007200_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:2:224484791:224490009:1 gene:Zm00001d007200 transcript:Zm00001d007200_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Centromere protein-like
Sequence

MRRFFFFGSPAANAGEGAGQPVNDSRTGHRKTDEGKDISTARLSRSRSRRQKRNKEEPAN
PKQLRRSMSFSSPARSSCVEERCFSFSGDVPCSLYDESDAPHHAKDVAPDMWSPEGNPFS
REYAIRTPKDHSAMENDSPRSKYCSCSAGHSPVSSPVAIQCRSTRLGNLLNRNEVLDRYI
DRGHGDAIVDEKQKQCVPTVSNLGRPPRPHSTVPSIPRPFKETTESYPDVDLNDAFLWRL
AQEGIGDTHKITTMCSASRRHINMSDASERESATTVEDIYEDLQDVRLPNVICPSTCPNS
AVEETDDMLLQRVKEVESRFTIPCGDEYEFSMLRYKSSTSNDMFQLIQQLTEDRKQLAYE
LSSEIKARVTERFAAKEQYKQLKKELDNRTRRLEKEKSEVQTTLEGEMDRRSDDWSIRLS
RFQSEEERLHERVRELAEQNVSFQREVTSLGATKAEALMKAASLETQNSKLNDDLEKLKN
EHEKLHYSSTDLQARFAEIVEERDHIREYLKAKEGENKALHKVIARLQTTCNEQERTITG
MRQGCIDELGRKFVEYSTNDKTRKLQMELIRLTGVEQKLRGEIRSCNLEVKSLRQENIAL
LNRLQGAGNGASFSSIRLDQELQARVDNLQMQGLSLLDKISQLCTKLLDLMKHKRHENEY
LCGNDVSTFSDYIFEYQSIKGGIEGLKLSLKAINSILAEKQNAKEKSGEIVAEGSPSKDQ
TDDFGLKLKEEAMLNRVLKEAVLSKEVAIEQLQSDLASSLRIQDVMRNEIQRVQDELSCI
THKAKQLELQVSKKDESIDEIQQDFQESAKELAALRGTLKTVTEERDLSWQEAKQLRRNI
SIMQDEVVSLKKKIEALDEDILVKEGQITILQDSIDKPFDIICSPRSMREFDMA

Transcript Sequence

Transcript ID

Zm00001d007200_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:224484791:224490009:1 gene:Zm00001d007200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Centromere protein-like
Sequence

GCAGGGACTAGTTTGTGGCGGAATCTCAAACCCAGGAACCTGTGAATCCTCGACACTTGT
GAAACATGAGAAGGTTCTTTTTCTTCGGGTCCCCTGCTGCAAACGCTGGTGAGGGAGCCG
GGCAACCGGTCAATGATAGCAGGACTGGACATAGAAAGACAGATGAGGGAAAGGACATCT
CCACCGCGAGATTGTCGAGATCCAGAAGCCGTCGTCAGAAGCGGAATAAGGAGGAACCGG
CTAACCCCAAACAACTCAGGAGGTCCATGTCCTTCTCATCCCCGGCCAGAAGCAGCTGTG
TGGAGGAACGATGCTTTAGCTTCTCGGGTGATGTTCCGTGCTCTTTGTACGATGAATCTG
ATGCACCCCACCATGCCAAAGATGTCGCTCCCGACATGTGGTCTCCAGAAGGGAATCCGT
TCTCTAGAGAATATGCAATAAGAACCCCGAAAGATCATTCTGCCATGGAAAATGATTCTC
CTCGTTCAAAATACTGTTCTTGCTCAGCAGGGCACTCTCCTGTTAGCTCTCCTGTCGCTA
TACAGTGCAGATCAACAAGACTAGGCAATTTATTAAACAGGAACGAAGTACTAGATCGTT
ACATTGATAGAGGGCATGGAGATGCAATCGTAGATGAGAAACAGAAGCAGTGCGTACCTA
CGGTTTCTAATTTGGGAAGGCCACCTCGACCCCACTCTACAGTACCATCCATACCGAGAC
CATTCAAAGAGACAACGGAAAGCTACCCAGATGTGGACTTAAACGACGCCTTCCTTTGGC
GACTTGCTCAAGAGGGTATAGGAGATACCCACAAGATTACAACTATGTGCAGTGCATCTA
GACGCCACATAAACATGTCAGATGCTTCTGAAAGAGAAAGTGCAACAACTGTTGAAGATA
TTTATGAAGATTTGCAAGATGTGAGACTTCCAAATGTTATCTGCCCCTCCACTTGTCCTA
ACTCAGCGGTAGAAGAAACTGATGACATGTTGCTTCAAAGAGTTAAGGAAGTTGAGTCAA
GGTTTACTATTCCTTGTGGAGATGAATATGAATTTAGCATGCTCAGGTATAAATCATCAA
CCTCAAATGACATGTTTCAGTTGATCCAGCAATTGACTGAAGATAGGAAACAGTTAGCAT
ATGAATTGTCTTCAGAGATCAAAGCACGTGTTACAGAAAGATTTGCTGCCAAAGAGCAAT
ACAAACAATTAAAGAAAGAATTGGACAACAGAACTAGAAGGCTGGAGAAGGAGAAGAGTG
AAGTACAAACTACACTGGAAGGAGAGATGGATAGAAGGTCAGATGATTGGTCTATCAGGC
TATCAAGATTTCAATCTGAAGAAGAGAGACTACATGAACGGGTGAGAGAACTTGCAGAGC
AGAATGTGTCATTTCAGAGAGAAGTTACTTCTCTTGGAGCAACTAAGGCTGAAGCTTTAA
TGAAAGCTGCGAGTTTGGAAACGCAAAATAGCAAACTAAATGACGATCTAGAGAAACTAA
AAAATGAGCATGAGAAACTGCATTATTCCTCAACAGATTTGCAGGCTCGCTTTGCTGAGA
TTGTAGAGGAAAGGGACCACATCCGAGAATATTTGAAGGCCAAGGAGGGAGAGAACAAAG
CATTGCACAAAGTAATTGCAAGACTACAAACAACATGTAATGAGCAGGAAAGAACAATCA
CAGGCATGAGACAAGGATGCATAGACGAATTAGGTAGGAAATTTGTTGAGTACAGCACCA
ATGATAAAACGAGAAAATTACAAATGGAACTTATTAGACTGACTGGGGTGGAGCAAAAGT
TGAGAGGTGAAATTCGATCTTGTAATCTTGAAGTAAAATCTCTCAGACAAGAGAACATTG
CACTCTTAAATCGTTTACAAGGTGCTGGAAATGGAGCAAGCTTCTCCTCGATTCGACTTG
ATCAGGAGCTTCAAGCTAGGGTGGACAACCTGCAAATGCAAGGCTTGTCACTACTTGATA
AGATTAGCCAACTTTGTACCAAATTGCTGGATCTGATGAAACATAAGAGACATGAAAATG
AATATTTGTGTGGCAATGATGTGTCAACATTCAGTGATTACATATTTGAGTACCAGAGCA
TCAAAGGAGGAATTGAAGGTCTGAAGCTAAGTTTGAAAGCAATAAATTCTATACTAGCTG
AAAAGCAAAATGCTAAAGAAAAATCTGGTGAAATTGTAGCTGAAGGTAGTCCTTCCAAAG
ATCAAACGGATGATTTTGGACTCAAGCTGAAAGAAGAGGCTATGCTGAATAGAGTACTGA
AGGAGGCAGTCTTGTCAAAAGAAGTTGCCATTGAACAATTGCAATCTGATCTGGCATCTT
CACTTCGCATCCAAGACGTTATGAGAAACGAGATCCAGAGGGTTCAGGATGAGCTTTCTT
GCATAACCCACAAAGCTAAGCAGTTGGAGCTTCAGGTATCCAAGAAGGATGAGTCAATCG
ATGAGATCCAACAGGATTTCCAGGAATCTGCAAAGGAGCTGGCTGCTCTTCGTGGAACAC
TGAAAACAGTGACGGAGGAGAGGGACCTGTCGTGGCAGGAGGCGAAGCAGCTGAGACGAA
ACATCAGCATCATGCAGGACGAGGTTGTATCGCTGAAGAAGAAGATCGAAGCCCTGGACG
AAGACATACTTGTGAAGGAGGGGCAGATCACAATATTGCAGGACAGCATCGACAAGCCGT
TCGACATCATCTGCAGCCCAAGATCGATGAGGGAGTTCGATATGGCGTGAAGACGGCTGC
TGTTTTGTAGCGTATGCATGAAGGATTTTTTGCATCAAGGGCAAGATGCATGGAGTATAA
TGTGTTGGAAGTTGACAGTAGACCCAACAACACATTGCATTCTGGTCAATTGTTTCTGTC
TGGTGGGACAGCACAAGCGAAGGTTTTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCTGCTTGGTTTATTTCTAGACAAGGACACGCTGAATGC
GCCACGTGTGGTCTAAGTCTAAAGCTGTGTCATCGTATTTATTGCTTTGCTTTCTATTTT
ATCTTGTACAGTATACAAGTAGCTACCATTAGCTGCAGAAGATGCCTGCATCTCCAAGCG
TCTTAACCGGCTCCTTGTATTGATTTGAGCTGTCGATTTCAGAAGCAAGTTGGACGTAAC
G