Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007111_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:222481037:222485565:1 gene:Zm00001d007111 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGCTGCGTGCACGGACGCCCCACCACCTCCAGCCCCGCGCCCGCCGCCACCTCCTCT
CGCCGCCGGGACCAGCCCGCGGCCTCCCAGCCGCACCAGGAAGGGGTCGATTCCTCCGAC
GCCGCGCCTCCAGCGGACGCCGCGGCGCCGGAGCAGCCGGCGGCCGAGAAGCCTGAGAAG
GTCAAGCGGGAGCGGCGGTCGCGGTCGTCGCGCTCCGCAGCCACCGCGGCGGCGGCGCAC
GCCGAGGTGCGCCTGGGCGGGAGCTTCGCCAACAAGGCGCGCGGGGAGCAGGTCGCCGCT
GGCTGGCCCGCCTGGCTCTCCGCCGTCGCCGGTGAGGCCATCGATGGCTGGACCCCTCGC
CGCGCCGACTCCTTCGAGAAGATCGACAAGATCGGCCAGGGCACGTACAGCAATGTGTAC
AAGGCGCGGGACTCGCTCAGCGGCAAGATCGTGGCGCTCAAGAAGGTGCGCTTCGACAAC
CTGGAGCCCGAGAGCGTGCGGTTCATGGCGCGCGAGATCCTCATCCTGCGCCGCCTCGAC
CACCCCAATGTCATCAAGCTCGACGGGCTCGTCACCTCCCGCATGTCCTGCAGCCTCTAC
CTCGTCTTCGACTACATGGTCCACGACCTCGCCGGCCTCGCTGCCAGCCCCGACATCAAG
TTCACGCTGCCCCAGGTCAAGTGCTATATGCGTCAGCTCTTGTCAGGGCTGGAGCACTGC
CACAACCGGGGAGTGCTTCATCGCGACATCAAGGGGTCAAACCTGCTTTTGGACAACAAC
GGTGTGCTGAAGATTGGTGATTTCGGTCTGGCGTCCTTCTTCGACCCCAACCATAAACAG
CCAATGACGAGTCGGGTGGTGACACTCTGGTACCGCCCTCCAGAGTTGCTGCTGGGTGCG
ACGGATTATGGAGTTGGCGTAGACTTGTGGAGTGCAGGATGTATACTGGCTGAATTGCTG
GCTGGAAAGCCTATTATGCCTGGACGGACTGAGGTGGAACAGCTGCATAAAATTTTTAAG
CTATGTGGCTCTCCGACTGAAGAATATTGGAAAAAATCAAAGTTGCCCCATGCAACTATA
TTTAAGCCTCAACAGCCATACAAAAGGCGAATAGCAGATACATTCAAAGATTTCCCTCAA
TCAGCACTTCGACTGATCGAGACACTACTTGCAATCGATCCATCTGACCGATTAACTGCA
ACTTCTGCATTGAACAGTGATTTCTTTAAAACAGAGCCTTATGCGTGTGAACCATCAAGT
CTGCCCCAATACCCGCCAAGCAAAGAGATGGATGCCAAACGAAGAGACGAAGAAGCTAGA
CGATTAAAGGCTGCTGGTGGTAGAGCTAATGGAGATGGAACAAGGAAGACAAGGACACGG
GACCGGCCTAGGGCTGTTCCAGCTCCAGAGGCAAACGCCGAACTGCAAGCAAATATTGAT
AAAAGAAGGTTAATAACTCATGCAAATGCGAAGAGCAAGAGTGAAAAGTTCCCTCCGCCG
CATCAGGATGGCGCACTTGGATTTCCCTTGGGCTGTTCGAACCACATGGAACCTTCATTT
GAACCCCCAGACCCTTCTTCCTTCAGCACTGTATTTCCTTACGAAAAAAGCACCGTGCCA
ACCTGGTCCGGACCATTGGCGGACTCTGCAGCTGGCAACCAGAAGCGGAAACACAAGTCT
GGCCGCTCCTCGAAACAACCAGCAACCGCCCGTGCTAGATGA

Peptide Sequence

PEP ID

Zm00001d007111_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:222481037:222485565:1 gene:Zm00001d007111 transcript:Zm00001d007111_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGCVHGRPTTSSPAPAATSSRRRDQPAASQPHQEGVDSSDAAPPADAAAPEQPAAEKPEK
VKRERRSRSSRSAATAAAAHAEVRLGGSFANKARGEQVAAGWPAWLSAVAGEAIDGWTPR
RADSFEKIDKIGQGTYSNVYKARDSLSGKIVALKKVRFDNLEPESVRFMAREILILRRLD
HPNVIKLDGLVTSRMSCSLYLVFDYMVHDLAGLAASPDIKFTLPQVKCYMRQLLSGLEHC
HNRGVLHRDIKGSNLLLDNNGVLKIGDFGLASFFDPNHKQPMTSRVVTLWYRPPELLLGA
TDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSKLPHATI
FKPQQPYKRRIADTFKDFPQSALRLIETLLAIDPSDRLTATSALNSDFFKTEPYACEPSS
LPQYPPSKEMDAKRRDEEARRLKAAGGRANGDGTRKTRTRDRPRAVPAPEANAELQANID
KRRLITHANAKSKSEKFPPPHQDGALGFPLGCSNHMEPSFEPPDPSSFSTVFPYEKSTVP
TWSGPLADSAAGNQKRKHKSGRSSKQPATARAR

Transcript Sequence

Transcript ID

Zm00001d007111_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:222481037:222485565:1 gene:Zm00001d007111 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AGTCGCCCAAGCTCCTTTCCTTTCCTTTACTTTACTTTACTCGCCCCTAACCCCGCCTTC
CGCTTCCCACCCGCCCGCCTGCCTCCCCGCGCCGCCGCCTCCGGATCGCGGCCTCCCTCC
CTCCTGCGCCGAAGCTTCGCGCGCTCGGCCCGCCCCATGCTTCGCCGCGGGTGACCGACG
CCTCCACGGCCGGCCATGGGCTGCGTGCACGGACGCCCCACCACCTCCAGCCCCGCGCCC
GCCGCCACCTCCTCTCGCCGCCGGGACCAGCCCGCGGCCTCCCAGCCGCACCAGGAAGGG
GTCGATTCCTCCGACGCCGCGCCTCCAGCGGACGCCGCGGCGCCGGAGCAGCCGGCGGCC
GAGAAGCCTGAGAAGGTCAAGCGGGAGCGGCGGTCGCGGTCGTCGCGCTCCGCAGCCACC
GCGGCGGCGGCGCACGCCGAGGTGCGCCTGGGCGGGAGCTTCGCCAACAAGGCGCGCGGG
GAGCAGGTCGCCGCTGGCTGGCCCGCCTGGCTCTCCGCCGTCGCCGGTGAGGCCATCGAT
GGCTGGACCCCTCGCCGCGCCGACTCCTTCGAGAAGATCGACAAGATCGGCCAGGGCACG
TACAGCAATGTGTACAAGGCGCGGGACTCGCTCAGCGGCAAGATCGTGGCGCTCAAGAAG
GTGCGCTTCGACAACCTGGAGCCCGAGAGCGTGCGGTTCATGGCGCGCGAGATCCTCATC
CTGCGCCGCCTCGACCACCCCAATGTCATCAAGCTCGACGGGCTCGTCACCTCCCGCATG
TCCTGCAGCCTCTACCTCGTCTTCGACTACATGGTCCACGACCTCGCCGGCCTCGCTGCC
AGCCCCGACATCAAGTTCACGCTGCCCCAGGTCAAGTGCTATATGCGTCAGCTCTTGTCA
GGGCTGGAGCACTGCCACAACCGGGGAGTGCTTCATCGCGACATCAAGGGGTCAAACCTG
CTTTTGGACAACAACGGTGTGCTGAAGATTGGTGATTTCGGTCTGGCGTCCTTCTTCGAC
CCCAACCATAAACAGCCAATGACGAGTCGGGTGGTGACACTCTGGTACCGCCCTCCAGAG
TTGCTGCTGGGTGCGACGGATTATGGAGTTGGCGTAGACTTGTGGAGTGCAGGATGTATA
CTGGCTGAATTGCTGGCTGGAAAGCCTATTATGCCTGGACGGACTGAGGTGGAACAGCTG
CATAAAATTTTTAAGCTATGTGGCTCTCCGACTGAAGAATATTGGAAAAAATCAAAGTTG
CCCCATGCAACTATATTTAAGCCTCAACAGCCATACAAAAGGCGAATAGCAGATACATTC
AAAGATTTCCCTCAATCAGCACTTCGACTGATCGAGACACTACTTGCAATCGATCCATCT
GACCGATTAACTGCAACTTCTGCATTGAACAGTGATTTCTTTAAAACAGAGCCTTATGCG
TGTGAACCATCAAGTCTGCCCCAATACCCGCCAAGCAAAGAGATGGATGCCAAACGAAGA
GACGAAGAAGCTAGACGATTAAAGGCTGCTGGTGGTAGAGCTAATGGAGATGGAACAAGG
AAGACAAGGACACGGGACCGGCCTAGGGCTGTTCCAGCTCCAGAGGCAAACGCCGAACTG
CAAGCAAATATTGATAAAAGAAGGTTAATAACTCATGCAAATGCGAAGAGCAAGAGTGAA
AAGTTCCCTCCGCCGCATCAGGATGGCGCACTTGGATTTCCCTTGGGCTGTTCGAACCAC
ATGGAACCTTCATTTGAACCCCCAGACCCTTCTTCCTTCAGCACTGTATTTCCTTACGAA
AAAAGCACCGTGCCAACCTGGTCCGGACCATTGGCGGACTCTGCAGCTGGCAACCAGAAG
CGGAAACACAAGTCTGGCCGCTCCTCGAAACAACCAGCAACCGCCCGTGCTAGATGATAC
ACATCATGCCATGCTTAGTCCAAACCAAATCTTCAATACCTCCCAAAGAAATACCTTGCA
GTGGTTCCTACAAACTGGGATACCTGATTCGGAATCAAGAGCTACAGCAATGAACTGTTT
TCTTTTCCTCAGATCCATTCATGTACGCATTTTTTTTCCTGAGCATCGAGCAATGTATAG
GCTGGAGATGGAGCTGGATTAGTCAGTTATGTACATTAGGTTCTCTTTTCCATTCTTACA
AGCAGCAACATGTCAGTTTAGATTTATTCGAGTGAGGAATGGAGCTGGTAGGTCAACTTA
GCAAGCTATCATTCTACATAGATACTTACAATCAATTGAAATATTTTTTACTTTTTATTT
TGTCTA