Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d007090_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:2:222096488:222100048:-1 gene:Zm00001d007090 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA pseudouridine synthase 6 chloroplastic
Sequence	ATGCAGAAGCCAGTGGCCTCCGTCGTCTCCCTATGTCCGCAGCTATGGCACCGCCACTTC CGTCGCGCTCCCCTCCTCCCCCGCGCCCGCGGCCTCCCCTCCTCCTCTCCTATCCTCACA CGCCGCCGCTCCGTACTCCCCCGTTCCACTTCCACTCACCTCGCCGCGGTGTCAACCGCT GCCGCCGCCGCCGCCGCCCCATCAGCCACACCGTACCCAGTGTACGATCGGCTTCTGCCG TGCCCCTTGCAGGACGACCCTCCGAGAATCGAGCACCTCGTGGCTCGGGAGGACGAGGTG GCAGCCGATTTCATCGCCAGGTCGCTCGGCCTGCCTCCTCTGTATGCTGCAGACCTCATC GAGTTCGGTGCTGTGTACTACGCGCTCGTCGCCCCGCAGCCGCCTCCCTACGCTTCTCCG GAGCATTTTAGGCTCTTTCGGGAAGTCACCGAGCCTTCCGTCCTGCGCCGGAGGGCGTCC ATCAAGGGGAAGACGGTGAGGGAGGCTCAGAAGACGTTCCGGGTGACGGACCCCAACCAG CGCCTCGAGGCCGGCACCTACCTGCGGGTTCATGTGCATCCTAAACGGTTTCCAAGGTGC TATCAAATTGACTGGAAATCCAGGGTAATAGCAGTCGCTGATGAATACGTTGTTCTTGAT AAACCTGCCGCAACATCAGTGGGCGGAGCAACTGATAACATTGAGGAATCCTGTGCAGTC TTTACTTCGCGTGCATTAGGATTGGAAACGCCATTGCTGACGACTCACCAGATTGACAAC TGCTCTGAAGGCTGTGTGGTACTATCTAAAACGAAAGAGTTCTGCTCTGTTTTCCATGGA CTGATAAGGGAGAAACAGGTTAAAAAACTCTATCTTGCACTTACTACAGCACCTGTGTCA ACAGGAACGATTACCCATTATATGCGCCCAGTTAATCGCGCTCCTAGATTAGTTTCTGAA GACTGTATTGAAAGATGGCATCTCTGTCAAATGGAGGTACTCGATTGTAGCAAGGTACCA TGGCCAAGCTCTTCGATCAGGAAAGCTTACAATGTAAATGGTTGTGGGTGGCCACAGCAA GAAGCTGCTTACGAATGTAAAATCAATCTCTTGACAGGGAAAACTCACCAGATAAGGGCA CAGCTTGCTGCTATAGGCGCTCCTATTATAGGGGATTCTGCATACATGACTGCAGCAATG GCAGCGATGGCCAACCCAAGCATAAACCCATTCGGTAGAGAGAGGCTGAGTTACAACAGT GAAGAGGAGAAAGAAGCCGCCGTCGAAGCATGGATTGCCTCCCACGGGAAGGAACCAAAA TCCGTAATTGGGCTGCAAGCGTCAGAGATCTCTTGGGATCACGAGGGCAAGCACCATTCT TACAAGGCTGGAGTTCCGTGGTGGTGGCAGGATCCTGACTCCTGA

Peptide Sequence

PEP ID	Zm00001d007090_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:2:222096488:222100048:-1 gene:Zm00001d007090 transcript:Zm00001d007090_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA pseudouridine synthase 6 chloroplastic
Sequence	MQKPVASVVSLCPQLWHRHFRRAPLLPRARGLPSSSPILTRRRSVLPRSTSTHLAAVSTA AAAAAAPSATPYPVYDRLLPCPLQDDPPRIEHLVAREDEVAADFIARSLGLPPLYAADLI EFGAVYYALVAPQPPPYASPEHFRLFREVTEPSVLRRRASIKGKTVREAQKTFRVTDPNQ RLEAGTYLRVHVHPKRFPRCYQIDWKSRVIAVADEYVVLDKPAATSVGGATDNIEESCAV FTSRALGLETPLLTTHQIDNCSEGCVVLSKTKEFCSVFHGLIREKQVKKLYLALTTAPVS TGTITHYMRPVNRAPRLVSEDCIERWHLCQMEVLDCSKVPWPSSSIRKAYNVNGCGWPQQ EAAYECKINLLTGKTHQIRAQLAAIGAPIIGDSAYMTAAMAAMANPSINPFGRERLSYNS EEEKEAAVEAWIASHGKEPKSVIGLQASEISWDHEGKHHSYKAGVPWWWQDPDS

Transcript Sequence

Transcript ID	Zm00001d007090_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:222096488:222100048:-1 gene:Zm00001d007090 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA pseudouridine synthase 6 chloroplastic
Sequence	GAGCCAACATCGTTTCAGAGTCCCATCTGAACTCCGTAGCGTGATAGCAGAGGGCGGCAG CAGCAGCAAATCCCTGCTCCTTCCTCCTCCCCGGCCCCAAAACCGCACAAACCCCTGCTC CTCCTCCCGCCGCCGCCGCCGCCGGGGCACGCCGGGATGCAGAAGCCAGTGGCCTCCGTC GTCTCCCTATGTCCGCAGCTATGGCACCGCCACTTCCGTCGCGCTCCCCTCCTCCCCCGC GCCCGCGGCCTCCCCTCCTCCTCTCCTATCCTCACACGCCGCCGCTCCGTACTCCCCCGT TCCACTTCCACTCACCTCGCCGCGGTGTCAACCGCTGCCGCCGCCGCCGCCGCCCCATCA GCCACACCGTACCCAGTGTACGATCGGCTTCTGCCGTGCCCCTTGCAGGACGACCCTCCG AGAATCGAGCACCTCGTGGCTCGGGAGGACGAGGTGGCAGCCGATTTCATCGCCAGGTCG CTCGGCCTGCCTCCTCTGTATGCTGCAGACCTCATCGAGTTCGGTGCTGTGTACTACGCG CTCGTCGCCCCGCAGCCGCCTCCCTACGCTTCTCCGGAGCATTTTAGGCTCTTTCGGGAA GTCACCGAGCCTTCCGTCCTGCGCCGGAGGGCGTCCATCAAGGGGAAGACGGTGAGGGAG GCTCAGAAGACGTTCCGGGTGACGGACCCCAACCAGCGCCTCGAGGCCGGCACCTACCTG CGGGTTCATGTGCATCCTAAACGGTTTCCAAGGTGCTATCAAATTGACTGGAAATCCAGG GTAATAGCAGTCGCTGATGAATACGTTGTTCTTGATAAACCTGCCGCAACATCAGTGGGC GGAGCAACTGATAACATTGAGGAATCCTGTGCAGTCTTTACTTCGCGTGCATTAGGATTG GAAACGCCATTGCTGACGACTCACCAGATTGACAACTGCTCTGAAGGCTGTGTGGTACTA TCTAAAACGAAAGAGTTCTGCTCTGTTTTCCATGGACTGATAAGGGAGAAACAGGTTAAA AAACTCTATCTTGCACTTACTACAGCACCTGTGTCAACAGGAACGATTACCCATTATATG CGCCCAGTTAATCGCGCTCCTAGATTAGTTTCTGAAGACTGTATTGAAAGATGGCATCTC TGTCAAATGGAGGTACTCGATTGTAGCAAGGTACCATGGCCAAGCTCTTCGATCAGGAAA GCTTACAATGTAAATGGTTGTGGGTGGCCACAGCAAGAAGCTGCTTACGAATGTAAAATC AATCTCTTGACAGGGAAAACTCACCAGATAAGGGCACAGCTTGCTGCTATAGGCGCTCCT ATTATAGGGGATTCTGCATACATGACTGCAGCAATGGCAGCGATGGCCAACCCAAGCATA AACCCATTCGGTAGAGAGAGGCTGAGTTACAACAGTGAAGAGGAGAAAGAAGCCGCCGTC GAAGCATGGATTGCCTCCCACGGGAAGGAACCAAAATCCGTAATTGGGCTGCAAGCGTCA GAGATCTCTTGGGATCACGAGGGCAAGCACCATTCTTACAAGGCTGGAGTTCCGTGGTGG TGGCAGGATCCTGACTCCTGAGTGCGATGGTGGATTGGATGGGGGAGTTCCATATGAACC CCTGGAATCTCGCCTTTTTAGAGGACAGATGTTTTTCTACATTGTTCCGAGTGCTGAGCG ACCACTGTCCAACACGAACATTGGTTTGGTTTGGTTGCTGCGCAGAAATTGTTGGGTCAC CGAAAACTGAATTTGGGCTTGGGAGATGAAACTAAGCCCGAGTCTGAGCTCTCGACCAGG CCAACACGAACACCACACCAGAGCTCCTTCAACTGGGAAAAGCAGATCCAGGCCAACACG AACATTGCTTTGCTGTTCATTCTAGGGCATGCAACGTCATTCGTTCTATGACTGTAGCTG TATGGTTGTGTGCAAGGCCTAGCTTCTATTTGGGACAGCTCTCAATAATATTCCCTGGAG ATTGAGTTGGGGTGAGACCGTCTCTCATAAAGTCAGTGACCGAAACATCAAATTTTTTAA AGGCAAGCATCTTAAAATCGATAATGGGGCGTTTGGATCCCTCATTTAATAGGAATTGAA GTTCACT