Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d007070_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:221396699:221400079:-1 gene:Zm00001d007070 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plasma-membrane choline transporter family protein
Sequence

ATGGGCGCCGCCGAGAACCCCCCGGCGCCGCCGCGGCAGGAGTCTGCACCAGTCAGGGGA
GCGGCTCCGACGCCGGCGACGGAGGCGGTGGAGAAGGTGGTCGTCGTGGACCAGGCGCCG
CCCCCGCAAGCGGCGTCGAGGCTGCAGGCGCAGCGGCCGCTGGCGCCGCTGCAGGTCACC
ACGCAGGCGCCGCCGCCGCCCATGACGGTGGCCTCCGGCGCCGTCGAGCCGCCGCCGCAG
TTGGCAGCGTACCAGCCTGTCATGCAGCCTCCGCAGCAGGGGCCGCTTCCGTCGCTCAAC
TCAAGCAAGTACACCAACGGCATAACGCTGTGCCTCTTCCTGCTCCACCTTGCCGCCGCG
GCAGCCGCCATGGGGTTCTTCGTGTTCAAGACCGTCCAGGAGATCAGCCAGCACCCAAGG
TCGCACGACGCGCAGCGAGAGCGCAGCCTGCTGCGGGACTGGCTGCTGCCCGTGGAGGGC
GCGGTGGCGCTCAGCATCGTGCTGGCCTTCGCGTGGCAGAAGGCCGTGCGCGCGTGGCCG
CGCGCTATGGTGCGCGTCATCCTCTGGTCCAGCTTCGGTGTGACCCTGGCCGTGGGCGCG
CTGCTCATGTGCTTCTCGATGCTGGCCACTGTGGGGCTGGGCGTGGCGATGGTGGTGTTC
TCCATCGGCACCGGGCTGTACGCGTGCTGGGTGACGCGGCGTGTGGGCTTCACGGCGCGG
GTGTTCGAGCGCGCGGTGCAGCCGGTGGATAAGTTCCACGGTTTGAATGGCCCCGCGTAC
CTGATGGTGGCGGCGGGCTTCGCGTGGATCTCCGTGTGGTGCGTGGCGGTGATCGGAGCT
GTGAACTTCCGCTTCCCCGGGCTCACCATCCTGGGGCTGGTGGTCAGCCTGGCGTGGACC
GCCGAGGTGATGCGGAACGTGGCGAACCTGACGGTGAGCCGGGTGATCGCGCTCTACTAC
CTGCGCGGCATGCAGTCGAGCGTGCAGTTCAGCTTCCACCGCGCGCTGTCGCACAACCTC
GGCAGCGCCTGCCTGGGCTCGCTCTTCGTGCCCACCATCGAGGCGCTCCGCATCCTGGCG
CGCGGGCTCAACCTGCTGGAGGGCGAGGACGAGTTCATGTTCTCCTGCGCGCACTGCTGC
CTCCACGTCATGAACGCCATCTTCAGCTTCGGCAACAGCTGGGCCTTTGTCCACATCGCG
GCGTACGGGCGAGGGTTCGTGCAGGCGTCGCGGAGCACGTGGAGCCAGTTCGAGGCGCTG
CCGGGGATGGCGGCGCTGGTGGACTCGGACATCACCAGCTCCGTGTGCTTCCTGACGGGC
GTGACGAGCGGCGCGCTGTGCGTGGCGCTGGCGGGGTCCTGGGCGTTCGCGACGCACCGG
CACTACACGGCCACCGTGTCGCTGCTGGCCTTCTACGTCGGGTACCTGATGACCCGCATC
GGCATGGCGCTGCCCCAGGCGTGCGTCGGCTGCTACTACGTCTGCTACGCCGAGAACCCC
ACGTCGCGGCTCTTCGACGGTAACATACCGAACCAGCTGAGCAAGATGCAGGAAAGCCGC
GGCCCGTCCGTGCCGACGCCGCGGTTCCCGCACCGCCAGCACGTCGGCGCGTGA

Peptide Sequence

PEP ID

Zm00001d007070_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:221396699:221400079:-1 gene:Zm00001d007070 transcript:Zm00001d007070_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plasma-membrane choline transporter family protein
Sequence

MGAAENPPAPPRQESAPVRGAAPTPATEAVEKVVVVDQAPPPQAASRLQAQRPLAPLQVT
TQAPPPPMTVASGAVEPPPQLAAYQPVMQPPQQGPLPSLNSSKYTNGITLCLFLLHLAAA
AAAMGFFVFKTVQEISQHPRSHDAQRERSLLRDWLLPVEGAVALSIVLAFAWQKAVRAWP
RAMVRVILWSSFGVTLAVGALLMCFSMLATVGLGVAMVVFSIGTGLYACWVTRRVGFTAR
VFERAVQPVDKFHGLNGPAYLMVAAGFAWISVWCVAVIGAVNFRFPGLTILGLVVSLAWT
AEVMRNVANLTVSRVIALYYLRGMQSSVQFSFHRALSHNLGSACLGSLFVPTIEALRILA
RGLNLLEGEDEFMFSCAHCCLHVMNAIFSFGNSWAFVHIAAYGRGFVQASRSTWSQFEAL
PGMAALVDSDITSSVCFLTGVTSGALCVALAGSWAFATHRHYTATVSLLAFYVGYLMTRI
GMALPQACVGCYYVCYAENPTSRLFDGNIPNQLSKMQESRGPSVPTPRFPHRQHVGA

Transcript Sequence

Transcript ID

Zm00001d007070_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:221396699:221400079:-1 gene:Zm00001d007070 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plasma-membrane choline transporter family protein
Sequence

AAATCCTACCTCGTCTCGCTTTCCCATCCCATCCCTCCCCTTCCAGCCTTCCTCCACGGT
CCACGCCACCAGTCGAGTCCACCGCTCCATAACTCCATTCCTCCGGCCTCCGCACGCCCT
ACTTCTCCATTCCGCAAAGAGGGGCCAGGCGTCAAGGGCGCGGCTGCTCTCTGCTGGACG
CGCGTCATGGGCGCCGCCGAGAACCCCCCGGCGCCGCCGCGGCAGGAGTCTGCACCAGTC
AGGGGAGCGGCTCCGACGCCGGCGACGGAGGCGGTGGAGAAGGTGGTCGTCGTGGACCAG
GCGCCGCCCCCGCAAGCGGCGTCGAGGCTGCAGGCGCAGCGGCCGCTGGCGCCGCTGCAG
GTCACCACGCAGGCGCCGCCGCCGCCCATGACGGTGGCCTCCGGCGCCGTCGAGCCGCCG
CCGCAGTTGGCAGCGTACCAGCCTGTCATGCAGCCTCCGCAGCAGGGGCCGCTTCCGTCG
CTCAACTCAAGCAAGTACACCAACGGCATAACGCTGTGCCTCTTCCTGCTCCACCTTGCC
GCCGCGGCAGCCGCCATGGGGTTCTTCGTGTTCAAGACCGTCCAGGAGATCAGCCAGCAC
CCAAGGTCGCACGACGCGCAGCGAGAGCGCAGCCTGCTGCGGGACTGGCTGCTGCCCGTG
GAGGGCGCGGTGGCGCTCAGCATCGTGCTGGCCTTCGCGTGGCAGAAGGCCGTGCGCGCG
TGGCCGCGCGCTATGGTGCGCGTCATCCTCTGGTCCAGCTTCGGTGTGACCCTGGCCGTG
GGCGCGCTGCTCATGTGCTTCTCGATGCTGGCCACTGTGGGGCTGGGCGTGGCGATGGTG
GTGTTCTCCATCGGCACCGGGCTGTACGCGTGCTGGGTGACGCGGCGTGTGGGCTTCACG
GCGCGGGTGTTCGAGCGCGCGGTGCAGCCGGTGGATAAGTTCCACGGTTTGAATGGCCCC
GCGTACCTGATGGTGGCGGCGGGCTTCGCGTGGATCTCCGTGTGGTGCGTGGCGGTGATC
GGAGCTGTGAACTTCCGCTTCCCCGGGCTCACCATCCTGGGGCTGGTGGTCAGCCTGGCG
TGGACCGCCGAGGTGATGCGGAACGTGGCGAACCTGACGGTGAGCCGGGTGATCGCGCTC
TACTACCTGCGCGGCATGCAGTCGAGCGTGCAGTTCAGCTTCCACCGCGCGCTGTCGCAC
AACCTCGGCAGCGCCTGCCTGGGCTCGCTCTTCGTGCCCACCATCGAGGCGCTCCGCATC
CTGGCGCGCGGGCTCAACCTGCTGGAGGGCGAGGACGAGTTCATGTTCTCCTGCGCGCAC
TGCTGCCTCCACGTCATGAACGCCATCTTCAGCTTCGGCAACAGCTGGGCCTTTGTCCAC
ATCGCGGCGTACGGGCGAGGGTTCGTGCAGGCGTCGCGGAGCACGTGGAGCCAGTTCGAG
GCGCTGCCGGGGATGGCGGCGCTGGTGGACTCGGACATCACCAGCTCCGTGTGCTTCCTG
ACGGGCGTGACGAGCGGCGCGCTGTGCGTGGCGCTGGCGGGGTCCTGGGCGTTCGCGACG
CACCGGCACTACACGGCCACCGTGTCGCTGCTGGCCTTCTACGTCGGGTACCTGATGACC
CGCATCGGCATGGCGCTGCCCCAGGCGTGCGTCGGCTGCTACTACGTCTGCTACGCCGAG
AACCCCACGTCGCGGCTCTTCGACGGTAACATACCGAACCAGCTGAGCAAGATGCAGGAA
AGCCGCGGCCCGTCCGTGCCGACGCCGCGGTTCCCGCACCGCCAGCACGTCGGCGCGTGA
GTGAGACGACGGAGCTTCTTTTCCCTCGTGTGCCACCGCCGCTCGTCGGTGTGGCTTGAT
CCGGATGAGGGCGGCGGCTCGTACGGCGGTCTGGAGATCAAATTTTATTTTTCTAGTTTT
GTAAATTTATTTATCCATTTTTTAGCTGACAGAAATGGTGAATCCCCAATATTTTGGGTG
TATGTAGACAGAGTACTATTCTTGCATAGGAGTTATGTGAATATTTTAACTAACTGAATC
AGAATCAGGCTTTGTCC