Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d006628_T008
CDS Infomation	cds chromosome:B73_RefGen_v4:2:212885078:212891585:-1 gene:Zm00001d006628 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein TIME FOR COFFEE
Sequence	ATGTCGAAGTCGCCGTCTTTCATTCAAGAGGAAATCGAGGTTGCCGAGGTGCTGTTCGGA CTCACCAGGCAGTTCTCGTGCCCTCCCAAACAAGAGGTCAACCACAAGCTCGATCCCAGA GATGTGCCAGAGTCCAAGTGTGGGAACTCTTCGTCGGCCCCCTCTTCTGGCGCCCGACCC TCTGATTCCACCTCCCTTTCCGCTATAGCGCCAAAGAGGAAGAAACCACGGCTGGCGAAG TACGATGAAGATAGCCGTCCGGCGAGCCCAACGAAGCCAGAGTTGGTGGAGCCGTCCTCA AAGCCGGAGCCACCTCCTGTGGCTAGATCAGAAGCAAAGATGGCAACGTCGGCAGCAACC GAAAGTGGCACCAGCACCGCACCTGCGGCTGTTCAACTCGAGACTTTACGAAAGCCAGAG AAGACGGAGGACTCAGAGCTCCGTCCAAGCGAACCAGATCGGCGAAATCACAGCCTGGAG AGCCAGGCGGAGCTGCCGGCGTCGTTGCCGGCGCCTTCAGTCAAGCCGGATGCTGAAGCA AAGCCGGTAGGATCCGAGGCCAGGAACGGCGAAGCTACTGCGACGACAAAGATTGAGCTG GCATCCGATGGCGCTCGGCATGACAAGTTTTCCATTGATCTCATGGCTCCCCCTCCTGGG AAGCTGTCTGATGATATAGATGCCTCCTCCGACCCTGATGCAGATAAGAAGGGATTGGAT TCTGAGATGGACATGTTGGGGAGAGGAAATTCGGAAAAGAAGGATGGTGAAAGGACTCTG GGAGGGCTGGATATTGATTTGGAGGACCAGAAGGTGCAAAGAATTCCAGCCGATGAGTCC ACGCCCAAGAAGCTCACACTGCAGTTGGATTTGGAGAAGCCCAGTCTTGGTGATGAAAAA TCACCATCACAGCGACGGCAGCCGCATCAACATCCACAACAATTGCAGCAGCTGAAGCCC TCAAAAGCTGAGATAAAGCACGAGAAATCTGCTATGCCTGCTGTTACACCACCTATACCT ATACCCGTTGGAGGTTGGCTTGGGAATTTCCCACCGTTTGGTTACCTTAGTCCAGTCCCA GGCCTATCAGGAGCTGGTCTTCATCATCCCATGGACGTGAAGCCAGGGTCTTCTAGTGGA TTACAGCATGCTGCATTGCTTCCACCGCCAACACGCTCAAAGAGATGTGCTACACATTGC TACATTGCGCAATTTATCCAGCACCAGCAGCGGGTTGCAAAGATGAACTCCTTCTGGCCG CCAGCTGTTGCAGCGGCAGCCGCCGCCGCCAACAGATCAGGGCCACTCTTTGGTGCAAGG CCATTCAGCATGGGTGTTGTGCCACCGACAGATGCTGCCTCTATGCTTGTGAACCCAATG CAGGGGAGCTACCCCATCAGGGCTCACACTCCAATGCAAGAAGCAAAGGCTCCTATGGCT ACTTCATTCCAGGGGAGTCTCTCGAAGGATAAAGCACTGGGCAATGCTGCTGGTCCTGAA TCAAGCCAGAGGAAACAACCGCCTGCTCATGAAACACAGCAGTCCACTCCCATGCCAAAC ATGCTGCAAGCCCTGGCATTCATCTTTCCATTCAATCAGCAACATGCTATGGTGGCAGCT GCAAATGCTGCCAATCGAGCAGGGGATGCAAAATCATCTGGAGCCAGCAATGCAATGCCG CCATCTGCCAGTGCTCACACTTTGGCAGCAAACTCTGGTGCCACGGCCATGAACTTGAGC TTTGCCAACTTGCAACCGGCTGATGCCCAGTTCTTGGCGATCTTACAGAATGGATACCAA TTCCAGGTTGCTGCTCATCCTGGAGGGCCTCCATATCGAGGCATGGCACCACCAGGCCCA GCTGTTCCATTCATCAATGGACATGTGTATTCCTCTCCCATGCTGCACCCATCACAGCAG CAAGGTGCGCAACCACAAAGTCATCAGAAGACCCAGCTGCCAAACTTGCCCAGTTCATCA CAGAAGCACCAGCCACAACATTCCCAAGGGCTATTGGGATATGCACCAAATGCTAACGCA GCAGCAGCTGCTAGTAATTCGCACAATTATTCAAGTGGAAATCAGCGCCCTGTCCTTGCG CACCGACAGGAGAGTGACAAAACTGGAGAAGATGGTCTATCGAGTGATGACAAGCCATCC CACTCTCAGAAGAGCGGGTATGAACACAATTTTGCTGTTCCAGTCCATCTACCGAATTTT GCAATGATGCCAGCTGCTCAACCTGCTGGCAGTCAGAGTGAGAAGAAGTTAAGTGACCAT CACCACCAGCAGCAGCAGCCACAAGTCAGTCGTGGCCAGGGTGTGAGGATTGATCTTGCG TCTTCTCAGCCTTTTGTGATGCCCTTTGGCTCCATTGGTCCTCCTGGATCTGCCCCATCT GGTCTCGACTTCTCGGCATTGGCGCAGAGCCATGCATTTTTACAGAGCCATCAAGAAGCA GCCCGGCATGGTTATCCTCAACTTAATTTTGCTGCAGCTCAATCTACGCAGCACAAGCCC CAGCATGGAGAAACAAAATCTGTCGCTGGGGATTCATCCTTGACACACATTGCCGGAGAC AGCCAGAGAAAGAAATCAACTTCTACAAAGTATTCTGGTGATTCACAGCAGCATTCGCTG TCCTTCACCAGGACAGAAAGCAAGAATCATGTGCCTCCTTTCCTTAGTGGCAGCACAAAT GAAAGTTCGTCCCGAACCCTAAGCCTTATTGGAACAGAATCTTCAAATACATTTATGGGA AGCAAATCCACAAATTCCACCACTCCTGCCTCAACACCACCTGCAGCTTCGTCTAGCATT TCTCAGCAGCACCAGCATTTCCTTCAGATGCAAGTGCAGCATAAGCATCAGCATCAGCAG ATGATTCAGCACCACCATTTGAATCGGCCTAGATCTGCCGCACCAAGTACACAAAATAGT GCAGGTGGGTACCCAGACCGTCTCAATATGGCGAGCTTTCAGAATATGATGTACCCACCA AATGCTGCCCAAGGCCAAGGGAGAGTTCAATCCCCCCAGTTGAAGGCATCCTCAGGGAGA GGGACACCTTCATCTACTGCTACCACTCCCCCTGCTGCTGCACCCCCTAATTTGATTGTG ATGAAGACAAGTAGTCTCCACCCGCAACAAGCAAAGATTCCTATGCAGGCTCTCTCCACT CCTGGTCACCAATCCCAGAGTTCTCTAAGCATGAGTTCATCAAAAATGGCTCCTGTAACT AACCTTTCTACTGGAGGAGGGGATCTATCTCGATCTTCAAATGCCCCTGTTGCTTCTGGT TCACCATCCAATTCGGTGTCCAAAAGCACTGGTGGCAGCCCGCCTGCCACAGGAAATGCA AAGGGTGTTCAGCAGCCTGTCCAATTGCCATCACCACAACAGCAGTTAGCCAAGAACTCT GTGTCGACGTGTGGCTCCAAGTCTACTCCTGCAAACCATTTCAGTATGGCTATGCCATCT ATCCTTGGCCAACAGCCTAATTCATCGCCTGGTTCTAATACCGGGAGCAAGCAGCAGTCA CATATGTCATCGTCAATGAAACAGCAGCCGTTCCCTCAAGGCCATTTCTTCATATCCAGC ACGTATGCTCCTCAGGCTCCAGGAGCCGGCGGTGCTGCTGCCCTTGGCCTATACCAGAAG CGACCAGGCGACAAGACACAGCCACAGGCACCACACCAGCAGAACGCCTTGTCAGCCGCT GCTGGCAGTAACATGAAATCGCTTCATCCTTCGTCCGGTGGATTTATGCATCTCGCAGCG GCAACCCAGTCTGCAGGTGGTGGCATGCCACACACCCACATGCCCGCGGCGCAACTGAGT TTCGGAACAATGCCGGTGCCTTTAAAACCCTCAAGCGACCAGAAGCCCGCTGCTGGAAAA TAA

Peptide Sequence

PEP ID	Zm00001d006628_P008
PEP Infomation	pep chromosome:B73_RefGen_v4:2:212885078:212891585:-1 gene:Zm00001d006628 transcript:Zm00001d006628_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein TIME FOR COFFEE
Sequence	MSKSPSFIQEEIEVAEVLFGLTRQFSCPPKQEVNHKLDPRDVPESKCGNSSSAPSSGARP SDSTSLSAIAPKRKKPRLAKYDEDSRPASPTKPELVEPSSKPEPPPVARSEAKMATSAAT ESGTSTAPAAVQLETLRKPEKTEDSELRPSEPDRRNHSLESQAELPASLPAPSVKPDAEA KPVGSEARNGEATATTKIELASDGARHDKFSIDLMAPPPGKLSDDIDASSDPDADKKGLD SEMDMLGRGNSEKKDGERTLGGLDIDLEDQKVQRIPADESTPKKLTLQLDLEKPSLGDEK SPSQRRQPHQHPQQLQQLKPSKAEIKHEKSAMPAVTPPIPIPVGGWLGNFPPFGYLSPVP GLSGAGLHHPMDVKPGSSSGLQHAALLPPPTRSKRCATHCYIAQFIQHQQRVAKMNSFWP PAVAAAAAAANRSGPLFGARPFSMGVVPPTDAASMLVNPMQGSYPIRAHTPMQEAKAPMA TSFQGSLSKDKALGNAAGPESSQRKQPPAHETQQSTPMPNMLQALAFIFPFNQQHAMVAA ANAANRAGDAKSSGASNAMPPSASAHTLAANSGATAMNLSFANLQPADAQFLAILQNGYQ FQVAAHPGGPPYRGMAPPGPAVPFINGHVYSSPMLHPSQQQGAQPQSHQKTQLPNLPSSS QKHQPQHSQGLLGYAPNANAAAAASNSHNYSSGNQRPVLAHRQESDKTGEDGLSSDDKPS HSQKSGYEHNFAVPVHLPNFAMMPAAQPAGSQSEKKLSDHHHQQQQPQVSRGQGVRIDLA SSQPFVMPFGSIGPPGSAPSGLDFSALAQSHAFLQSHQEAARHGYPQLNFAAAQSTQHKP QHGETKSVAGDSSLTHIAGDSQRKKSTSTKYSGDSQQHSLSFTRTESKNHVPPFLSGSTN ESSSRTLSLIGTESSNTFMGSKSTNSTTPASTPPAASSSISQQHQHFLQMQVQHKHQHQQ MIQHHHLNRPRSAAPSTQNSAGGYPDRLNMASFQNMMYPPNAAQGQGRVQSPQLKASSGR GTPSSTATTPPAAAPPNLIVMKTSSLHPQQAKIPMQALSTPGHQSQSSLSMSSSKMAPVT NLSTGGGDLSRSSNAPVASGSPSNSVSKSTGGSPPATGNAKGVQQPVQLPSPQQQLAKNS VSTCGSKSTPANHFSMAMPSILGQQPNSSPGSNTGSKQQSHMSSSMKQQPFPQGHFFISS TYAPQAPGAGGAAALGLYQKRPGDKTQPQAPHQQNALSAAAGSNMKSLHPSSGGFMHLAA ATQSAGGGMPHTHMPAAQLSFGTMPVPLKPSSDQKPAAGK

Transcript Sequence

Transcript ID	Zm00001d006628_T008
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:212885078:212891585:-1 gene:Zm00001d006628 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein TIME FOR COFFEE
Sequence	AGGCGTGGTGAAGGGCAGGGGGAGGCTTGCACCGCAGAGAAGCCAGAGGAGCGTTAGTAG TAGAAGAGCAGAGAGGGAGAGGGAGGAAGAGCCACGCGACGAGAGCCGAGGAGCCATCCA CCGCCCGCCTAATCCTTGTTCGCTGCTAGATTCGCCAGACCACCGAGGCGCTGCTCCCCG GATCTACGGGGCGGCGTCGGTGCTCATCGGAATCCAGAGAGGTGGCGGTTGTTTGCCGGG GATCGGCGCCGCATGTCTCAGATCTGAGATGGACAGGATCCGGGACGGCAGATTCAACGG CCTTTGTCACGGCCAATCTCTCCAGCGTCAGCCTCCACTACCGTCCCGGCTCGGAAGAAG CTTAAACCACTTGGAGGTGGGAGCAGCGGTGGTCCAGGACAAGCGTCAAAGCAGCGACCA TCACCGTCGCCAGCTCCATCAACAACCCCGCCACAACCACCGCCACCGAAGATGTCGAAG TCGCCGTCTTTCATTCAAGAGGAAATCGAGGTTGCCGAGGTGCTGTTCGGACTCACCAGG CAGTTCTCGTGCCCTCCCAAACAAGAGGTCAACCACAAGCTCGATCCCAGAGATGTGCCA GAGTCCAAGTGTGGGAACTCTTCGTCGGCCCCCTCTTCTGGCGCCCGACCCTCTGATTCC ACCTCCCTTTCCGCTATAGCGCCAAAGAGGAAGAAACCACGGCTGGCGAAGTACGATGAA GATAGCCGTCCGGCGAGCCCAACGAAGCCAGAGTTGGTGGAGCCGTCCTCAAAGCCGGAG CCACCTCCTGTGGCTAGATCAGAAGCAAAGATGGCAACGTCGGCAGCAACCGAAAGTGGC ACCAGCACCGCACCTGCGGCTGTTCAACTCGAGACTTTACGAAAGCCAGAGAAGACGGAG GACTCAGAGCTCCGTCCAAGCGAACCAGATCGGCGAAATCACAGCCTGGAGAGCCAGGCG GAGCTGCCGGCGTCGTTGCCGGCGCCTTCAGTCAAGCCGGATGCTGAAGCAAAGCCGGTA GGATCCGAGGCCAGGAACGGCGAAGCTACTGCGACGACAAAGATTGAGCTGGCATCCGAT GGCGCTCGGCATGACAAGTTTTCCATTGATCTCATGGCTCCCCCTCCTGGGAAGCTGTCT GATGATATAGATGCCTCCTCCGACCCTGATGCAGATAAGAAGGGATTGGATTCTGAGATG GACATGTTGGGGAGAGGAAATTCGGAAAAGAAGGATGGTGAAAGGACTCTGGGAGGGCTG GATATTGATTTGGAGGACCAGAAGGTGCAAAGAATTCCAGCCGATGAGTCCACGCCCAAG AAGCTCACACTGCAGTTGGATTTGGAGAAGCCCAGTCTTGGTGATGAAAAATCACCATCA CAGCGACGGCAGCCGCATCAACATCCACAACAATTGCAGCAGCTGAAGCCCTCAAAAGCT GAGATAAAGCACGAGAAATCTGCTATGCCTGCTGTTACACCACCTATACCTATACCCGTT GGAGGTTGGCTTGGGAATTTCCCACCGTTTGGTTACCTTAGTCCAGTCCCAGGCCTATCA GGAGCTGGTCTTCATCATCCCATGGACGTGAAGCCAGGGTCTTCTAGTGGATTACAGCAT GCTGCATTGCTTCCACCGCCAACACGCTCAAAGAGATGTGCTACACATTGCTACATTGCG CAATTTATCCAGCACCAGCAGCGGGTTGCAAAGATGAACTCCTTCTGGCCGCCAGCTGTT GCAGCGGCAGCCGCCGCCGCCAACAGATCAGGGCCACTCTTTGGTGCAAGGCCATTCAGC ATGGGTGTTGTGCCACCGACAGATGCTGCCTCTATGCTTGTGAACCCAATGCAGGGGAGC TACCCCATCAGGGCTCACACTCCAATGCAAGAAGCAAAGGCTCCTATGGCTACTTCATTC CAGGGGAGTCTCTCGAAGGATAAAGCACTGGGCAATGCTGCTGGTCCTGAATCAAGCCAG AGGAAACAACCGCCTGCTCATGAAACACAGCAGTCCACTCCCATGCCAAACATGCTGCAA GCCCTGGCATTCATCTTTCCATTCAATCAGCAACATGCTATGGTGGCAGCTGCAAATGCT GCCAATCGAGCAGGGGATGCAAAATCATCTGGAGCCAGCAATGCAATGCCGCCATCTGCC AGTGCTCACACTTTGGCAGCAAACTCTGGTGCCACGGCCATGAACTTGAGCTTTGCCAAC TTGCAACCGGCTGATGCCCAGTTCTTGGCGATCTTACAGAATGGATACCAATTCCAGGTT GCTGCTCATCCTGGAGGGCCTCCATATCGAGGCATGGCACCACCAGGCCCAGCTGTTCCA TTCATCAATGGACATGTGTATTCCTCTCCCATGCTGCACCCATCACAGCAGCAAGGTGCG CAACCACAAAGTCATCAGAAGACCCAGCTGCCAAACTTGCCCAGTTCATCACAGAAGCAC CAGCCACAACATTCCCAAGGGCTATTGGGATATGCACCAAATGCTAACGCAGCAGCAGCT GCTAGTAATTCGCACAATTATTCAAGTGGAAATCAGCGCCCTGTCCTTGCGCACCGACAG GAGAGTGACAAAACTGGAGAAGATGGTCTATCGAGTGATGACAAGCCATCCCACTCTCAG AAGAGCGGGTATGAACACAATTTTGCTGTTCCAGTCCATCTACCGAATTTTGCAATGATG CCAGCTGCTCAACCTGCTGGCAGTCAGAGTGAGAAGAAGTTAAGTGACCATCACCACCAG CAGCAGCAGCCACAAGTCAGTCGTGGCCAGGGTGTGAGGATTGATCTTGCGTCTTCTCAG CCTTTTGTGATGCCCTTTGGCTCCATTGGTCCTCCTGGATCTGCCCCATCTGGTCTCGAC TTCTCGGCATTGGCGCAGAGCCATGCATTTTTACAGAGCCATCAAGAAGCAGCCCGGCAT GGTTATCCTCAACTTAATTTTGCTGCAGCTCAATCTACGCAGCACAAGCCCCAGCATGGA GAAACAAAATCTGTCGCTGGGGATTCATCCTTGACACACATTGCCGGAGACAGCCAGAGA AAGAAATCAACTTCTACAAAGTATTCTGGTGATTCACAGCAGCATTCGCTGTCCTTCACC AGGACAGAAAGCAAGAATCATGTGCCTCCTTTCCTTAGTGGCAGCACAAATGAAAGTTCG TCCCGAACCCTAAGCCTTATTGGAACAGAATCTTCAAATACATTTATGGGAAGCAAATCC ACAAATTCCACCACTCCTGCCTCAACACCACCTGCAGCTTCGTCTAGCATTTCTCAGCAG CACCAGCATTTCCTTCAGATGCAAGTGCAGCATAAGCATCAGCATCAGCAGATGATTCAG CACCACCATTTGAATCGGCCTAGATCTGCCGCACCAAGTACACAAAATAGTGCAGGTGGG TACCCAGACCGTCTCAATATGGCGAGCTTTCAGAATATGATGTACCCACCAAATGCTGCC CAAGGCCAAGGGAGAGTTCAATCCCCCCAGTTGAAGGCATCCTCAGGGAGAGGGACACCT TCATCTACTGCTACCACTCCCCCTGCTGCTGCACCCCCTAATTTGATTGTGATGAAGACA AGTAGTCTCCACCCGCAACAAGCAAAGATTCCTATGCAGGCTCTCTCCACTCCTGGTCAC CAATCCCAGAGTTCTCTAAGCATGAGTTCATCAAAAATGGCTCCTGTAACTAACCTTTCT ACTGGAGGAGGGGATCTATCTCGATCTTCAAATGCCCCTGTTGCTTCTGGTTCACCATCC AATTCGGTGTCCAAAAGCACTGGTGGCAGCCCGCCTGCCACAGGAAATGCAAAGGGTGTT CAGCAGCCTGTCCAATTGCCATCACCACAACAGCAGTTAGCCAAGAACTCTGTGTCGACG TGTGGCTCCAAGTCTACTCCTGCAAACCATTTCAGTATGGCTATGCCATCTATCCTTGGC CAACAGCCTAATTCATCGCCTGGTTCTAATACCGGGAGCAAGCAGCAGTCACATATGTCA TCGTCAATGAAACAGCAGCCGTTCCCTCAAGGCCATTTCTTCATATCCAGCACGTATGCT CCTCAGGCTCCAGGAGCCGGCGGTGCTGCTGCCCTTGGCCTATACCAGAAGCGACCAGGC GACAAGACACAGCCACAGGCACCACACCAGCAGAACGCCTTGTCAGCCGCTGCTGGCAGT AACATGAAATCGCTTCATCCTTCGTCCGGTGGATTTATGCATCTCGCAGCGGCAACCCAG TCTGCAGGTGGTGGCATGCCACACACCCACATGCCCGCGGCGCAACTGAGTTTCGGAACA ATGCCGGTGCCTTTAAAACCCTCAAGCGACCAGAAGCCCGCTGCTGGAAAATAAACAGAG CCCAGGTGACCATGCGTCGGAGTGGTAATCTGAGCTGGCGAGCTCAAGTGCTTATCCAGC GGAAGCCCCAAATGGAGGAGGAAAGATACAATGAGAAGAGAAAAGCAGGCCACAGCTCGA AGAACCTGCTTTTGGTTGCTGCTGTGGTGATCAGGAAGGGGGAGGAGGGGCACTGCGAGG ACACGCCTTGCTAACTTAAAAGGTTGTTCGGGTCTGGGAATGGCTGATGTGAGTGAATAC TTTTGTGTAGTTTTGGCTGGTTATCCATCCTCCCATCCCATGGTGTAAAGGTCGGAGGAG TGCATAGAATCTGTCTC