Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006621_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:2:212770393:212773921:-1 gene:Zm00001d006621 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-dependent protein kinase 7
Sequence

ATGGGCAACTGCTGCGTAACACCGAACGGAGCCGCCGACGCCGGCGGCGGCAAGAAGCCC
AAGGAGCCGAAGCAGAAGAAGGGCAAGAAGCCGAACCCCTTCTCGATCGAGTACAACCGC
TCGACGCCGGCGAGCGCGCCGAGGCTGGTGGTGCTGCGGGAGCCCACGGGGCGGGACATC
GCGGAGCGGTACGAGCTTGGAGCGGAGCTCGGGCGCGGCGAGTTCGGGGTCACCTATCTC
TGCACGGACCGCGCCTCAGGGGAGGCGCTAGCCTGCAAGTCCATCTCCAAGAAGAAGCTC
CGCACCCCCGTCGACGTCGAGGACGTGCGCCGGGAGGTGGAGATCATGCGCCACCTCCCC
AAGCACCCCAACATCGTCACGCTCAGGGATACCTACGAGGACGACAATGCCGTGCACCTC
GTCATGGAGCTCTGTGAGGGTGGGGAGCTCTTCGACCGCATCGTGGCGCGGGGGCACTAC
ACGGAACGCGCTGCCGCCTTGGTCACACGCACTATCGTCGAGGTCGTGCAGATGTGCCAT
AAGCATGGAGTGATGCACAGGGATCTCAAACCAGAAAATTTCTTGTTTGCGAACAAAAAA
GAATCAGCAGCCCTTAAGGCCATTGATTTTGGCCTGTCTGTATTTTTCACTCCAGGCGAA
CGGTTTACAGAGATTGTTGGGAGTCCTTATTACATGGCCCCAGAGGTACTAAAGAGAAAT
TATGGCCCAGAGGTTGATGTTTGGAGTGCAGGGGTGATTCTGTACATTCTTCTCTGTGGT
GTCCCTCCATTCTGGGCAGAATCGGAGCAAGGTGTTGCTCAGGCAATTATCCGATCTGTC
ATTGATTTCAAAAGAGATCCATGGCCAAGGGTCTCTGATAATGCCAAAGACCTTGTAAGA
GGAATGCTCAACCCAGATCCAAAGCGACGATTGACAGCTCAGCAAGTGCTTGATCACCCA
TGGTTACAGAACATTAAGAAGGCTCCAAATGTCAATTTGGGCGAAACTGTTAAGGCCAGA
CTTCAACAATTCTCTGTGATGAACAAGTTCAAGAAGCATGCACTTAGGGTCATAGCTGAG
CATCTTTCAGTAGAAGAGGCTGCTGACATAAAGGATATGTTTGAGAAGATGGATCTTAAC
AAGGATCAAATGCTTAATTTCGATGAGCTGAAGCTTGGTCTGCATAAATTTGGTCACCAA
ATCCCTGATGCAGATGTTCAAATACTAATGGAAGCTGCGGATGCTGATGGAAACGGGTCC
TTGGATTATGGAGAATTTGTTACACTATCTGTTCATCTAAGAAAGATTGGAAATGATGAG
CATCTTCATAAGGCATTTGCATACTTTGACCGGAACCAGAGTGGTTATATTGAAATCGAT
GAACTCCGTGAGTCATTAGCTGATGACCTTGGACAGAATCATGAAGAGGTTATCAATGCC
ATTATCCGTGACGTAGACACCGATAAGGATGGCAAGATAAGCTACGATGAGTTTGCAGCG
ATGATGAAGGCCGGAACAGACTGGAGGAAAGCGTCGAGACAGTATTCGAGAGAGCGGTTC
ACCAGCCTGAGCCTTAAGCTGCAAAAGGATGGATCGTTGCAGATGGAGAGTACGCAGTAG

Peptide Sequence

PEP ID

Zm00001d006621_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:2:212770393:212773921:-1 gene:Zm00001d006621 transcript:Zm00001d006621_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-dependent protein kinase 7
Sequence

MGNCCVTPNGAADAGGGKKPKEPKQKKGKKPNPFSIEYNRSTPASAPRLVVLREPTGRDI
AERYELGAELGRGEFGVTYLCTDRASGEALACKSISKKKLRTPVDVEDVRREVEIMRHLP
KHPNIVTLRDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAALVTRTIVEVVQMCH
KHGVMHRDLKPENFLFANKKESAALKAIDFGLSVFFTPGERFTEIVGSPYYMAPEVLKRN
YGPEVDVWSAGVILYILLCGVPPFWAESEQGVAQAIIRSVIDFKRDPWPRVSDNAKDLVR
GMLNPDPKRRLTAQQVLDHPWLQNIKKAPNVNLGETVKARLQQFSVMNKFKKHALRVIAE
HLSVEEAADIKDMFEKMDLNKDQMLNFDELKLGLHKFGHQIPDADVQILMEAADADGNGS
LDYGEFVTLSVHLRKIGNDEHLHKAFAYFDRNQSGYIEIDELRESLADDLGQNHEEVINA
IIRDVDTDKDGKISYDEFAAMMKAGTDWRKASRQYSRERFTSLSLKLQKDGSLQMESTQ

Transcript Sequence

Transcript ID

Zm00001d006621_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:212770393:212773921:-1 gene:Zm00001d006621 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-dependent protein kinase 7
Sequence

CCTCCCCCTCCGCGTCCCCGTCGCTGCTGGGCTTGGCTTTACCACTGGGGCGGGTTCCCA
CACCGGGGCCAGACGCCGCCACCGCTGTCCCCGTCTACACCGAGTTCCCCCCGCGCGATT
TAACCCCTCGCCTCGCTCGCTGCCTCCGGTTCCCTACAACGCGCACACCAAACGCGCACG
CGGCGTTCGTTCCTCGGCCGCTCTCCCTACCCACGTCCTTCTCCCCCCACAGATCTCCGC
GGGCCGTGAGGTTCCTTGATTCGCCTTCTCCGGGGCTGCCGGATCTCCGCGGCGGCTGGG
GATGGGCAACTGCTGCGTAACACCGAACGGAGCCGCCGACGCCGGCGGCGGCAAGAAGCC
CAAGGAGCCGAAGCAGAAGAAGGGCAAGAAGCCGAACCCCTTCTCGATCGAGTACAACCG
CTCGACGCCGGCGAGCGCGCCGAGGCTGGTGGTGCTGCGGGAGCCCACGGGGCGGGACAT
CGCGGAGCGGTACGAGCTTGGAGCGGAGCTCGGGCGCGGCGAGTTCGGGGTCACCTATCT
CTGCACGGACCGCGCCTCAGGGGAGGCGCTAGCCTGCAAGTCCATCTCCAAGAAGAAGCT
CCGCACCCCCGTCGACGTCGAGGACGTGCGCCGGGAGGTGGAGATCATGCGCCACCTCCC
CAAGCACCCCAACATCGTCACGCTCAGGGATACCTACGAGGACGACAATGCCGTGCACCT
CGTCATGGAGCTCTGTGAGGGTGGGGAGCTCTTCGACCGCATCGTGGCGCGGGGGCACTA
CACGGAACGCGCTGCCGCCTTGGTCACACGCACTATCGTCGAGGTCGTGCAGATGTGCCA
TAAGCATGGAGTGATGCACAGGGATCTCAAACCAGAAAATTTCTTGTTTGCGAACAAAAA
AGAATCAGCAGCCCTTAAGGCCATTGATTTTGGCCTGTCTGTATTTTTCACTCCAGGCGA
ACGGTTTACAGAGATTGTTGGGAGTCCTTATTACATGGCCCCAGAGGTACTAAAGAGAAA
TTATGGCCCAGAGGTTGATGTTTGGAGTGCAGGGGTGATTCTGTACATTCTTCTCTGTGG
TGTCCCTCCATTCTGGGCAGAATCGGAGCAAGGTGTTGCTCAGGCAATTATCCGATCTGT
CATTGATTTCAAAAGAGATCCATGGCCAAGGGTCTCTGATAATGCCAAAGACCTTGTAAG
AGGAATGCTCAACCCAGATCCAAAGCGACGATTGACAGCTCAGCAAGTGCTTGATCACCC
ATGGTTACAGAACATTAAGAAGGCTCCAAATGTCAATTTGGGCGAAACTGTTAAGGCCAG
ACTTCAACAATTCTCTGTGATGAACAAGTTCAAGAAGCATGCACTTAGGGTCATAGCTGA
GCATCTTTCAGTAGAAGAGGCTGCTGACATAAAGGATATGTTTGAGAAGATGGATCTTAA
CAAGGATCAAATGCTTAATTTCGATGAGCTGAAGCTTGGTCTGCATAAATTTGGTCACCA
AATCCCTGATGCAGATGTTCAAATACTAATGGAAGCTGCGGATGCTGATGGAAACGGGTC
CTTGGATTATGGAGAATTTGTTACACTATCTGTTCATCTAAGAAAGATTGGAAATGATGA
GCATCTTCATAAGGCATTTGCATACTTTGACCGGAACCAGAGTGGTTATATTGAAATCGA
TGAACTCCGTGAGTCATTAGCTGATGACCTTGGACAGAATCATGAAGAGGTTATCAATGC
CATTATCCGTGACGTAGACACCGATAAGGATGGCAAGATAAGCTACGATGAGTTTGCAGC
GATGATGAAGGCCGGAACAGACTGGAGGAAAGCGTCGAGACAGTATTCGAGAGAGCGGTT
CACCAGCCTGAGCCTTAAGCTGCAAAAGGATGGATCGTTGCAGATGGAGAGTACGCAGTA
GTCGATAACACCCATAGGCAAGTTGTGAATTACAGAAGGAAACCCTGTGTAGATTTTCTG
GTTGTTTGTTGACAGCTCTTCTGCTCGTCCTGATCTTCTATTGCTTTCTATTCTTCACTC
GTCTGTTTGAAGCATTGGGGGGGATTGTTGATGCCGTGATTGTATTTAGACTGCATGATC
CAGCCTCACTGATTTCCACGCCTTAGGGCAAAGTGTACTGTACAAGAGAAAGAGGGGAAA
ATGATTAGGAG