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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006588_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:211696638:211701283:-1 gene:Zm00001d006588 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein THYLAKOID FORMATION 1 chloroplastic
Sequence

ATGGCGTCCATATCGTCGCTTCCCTTTGCGCCGCTGCGCGGAGCCGCCGAGTGGAGGCCG
TCGTCGACGGCGCCGGCCGTCTCCGGCGCCGTCGTGCTCAGCGCGAGGTCTCGGCGGGGC
TCGGGCTCGGTGGTGCGCTGCGTCGCCACGGCGAGTGATGTCCCACCTACTGTTGGAGAA
ACAAAGTTGAACTTCCTTAAGTCATACAAACGCCCAATCCCAAGCATTTACAGTACGGTC
TTACAAGAACTTCTGGTGCAGCAACACCTGATGAGATACAAAAGAACCTATCAGTATGAT
GCTGTGTTTGCTCTTGGATTCGTCACTGTCTATGATCAGCTCATGGAAGGGTACCCCAGC
ATCGAGGACAGGGATTCCATCTTCAAGGCATATATAACAGCATTAAATGAAGATCCTAAT
CAATACAGAGCTGATGCACTAAAGATGGAAGGGTGGGCACGTTCCCAGAATGGCAGTTCC
TTAGTTGATTTTTCTTCTAGAGATGGTGAAATTGAATCCATTCTGAAAGATATATCAGAA
AGGGCCAAGGGTAAGGGAAACTTCAGCTACAGCCGATTCTTTGCAGTTGGCTTGTTCCGT
TTGCTTGAGCTTGCAAATGCAACAGAACCAACAGTACTAGACAAGCTTTGCGCTGCGCTA
AACATCAATAAAAGAAGTGTGGATAGGGACCTTGATGTTTACCGCAACATACTCTCAAAG
CTGGTTCAAGCCAAGGAACTTCTCAAGGAATACGTGGATAGGGAAAAGAAGAAGAGAGAA
GAAAGATCAGAAACCCCAAAGCCAAATGAAGCTGTCACAAAATTTGATGGAAATCTTTAT
TCCATAAGGCATTAG

Peptide Sequence

PEP ID

Zm00001d006588_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:211696638:211701283:-1 gene:Zm00001d006588 transcript:Zm00001d006588_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein THYLAKOID FORMATION 1 chloroplastic
Sequence

MASISSLPFAPLRGAAEWRPSSTAPAVSGAVVLSARSRRGSGSVVRCVATASDVPPTVGE
TKLNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKRTYQYDAVFALGFVTVYDQLMEGYPS
IEDRDSIFKAYITALNEDPNQYRADALKMEGWARSQNGSSLVDFSSRDGEIESILKDISE
RAKGKGNFSYSRFFAVGLFRLLELANATEPTVLDKLCAALNINKRSVDRDLDVYRNILSK
LVQAKELLKEYVDREKKKREERSETPKPNEAVTKFDGNLYSIRH

Transcript Sequence

Transcript ID

Zm00001d006588_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:211696638:211701283:-1 gene:Zm00001d006588 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein THYLAKOID FORMATION 1 chloroplastic
Sequence

CTGCAAGAGCCTTTCCTCGCACTCGCCCCTCTGCATTTACCACATTGCCCTCGTCGGCGG
CGCCGACCAGCTGCCGCCGCGTCCAGCAAAACAACCGGCCGCTAGGTCCAAAATAGTTCC
CCATGGCGTCCATATCGTCGCTTCCCTTTGCGCCGCTGCGCGGAGCCGCCGAGTGGAGGC
CGTCGTCGACGGCGCCGGCCGTCTCCGGCGCCGTCGTGCTCAGCGCGAGGTCTCGGCGGG
GCTCGGGCTCGGTGGTGCGCTGCGTCGCCACGGCGAGTGATGTCCCACCTACTGTTGGAG
AAACAAAGTTGAACTTCCTTAAGTCATACAAACGCCCAATCCCAAGCATTTACAGTACGG
TCTTACAAGAACTTCTGGTGCAGCAACACCTGATGAGATACAAAAGAACCTATCAGTATG
ATGCTGTGTTTGCTCTTGGATTCGTCACTGTCTATGATCAGCTCATGGAAGGGTACCCCA
GCATCGAGGACAGGGATTCCATCTTCAAGGCATATATAACAGCATTAAATGAAGATCCTA
ATCAATACAGAGCTGATGCACTAAAGATGGAAGGGTGGGCACGTTCCCAGAATGGCAGTT
CCTTAGTTGATTTTTCTTCTAGAGATGGTGAAATTGAATCCATTCTGAAAGATATATCAG
AAAGGGCCAAGGGTAAGGGAAACTTCAGCTACAGCCGATTCTTTGCAGTTGGCTTGTTCC
GTTTGCTTGAGCTTGCAAATGCAACAGAACCAACAGTACTAGACAAGCTTTGCGCTGCGC
TAAACATCAATAAAAGAAGTGTGGATAGGGACCTTGATGTTTACCGCAACATACTCTCAA
AGCTGGTTCAAGCCAAGGAACTTCTCAAGGAATACGTGGATAGGGAAAAGAAGAAGAGAG
AAGAAAGATCAGAAACCCCAAAGCCAAATGAAGCTGTCACAAAATTTGATGGAAATCTTT
ATTCCATAAGGCATTAGATCAACCCTTTGCAGAGGAGAGTTTCCCAGTATAACAGAATTA
CGTGTTGAGAAACTACCAAATGATCTCCTTTCACCACAGACATCTTTTGCTGCTCGTCTT
GTGGTGTAGCATTCTTGCGGTACAAAAGGATCCAGATCATTCTTACTATTGGACAGATAT
TTGTATTTTCTCATGAGTCTTCAAATCAAATGTATTTATTTTCTGTCAGTCTGAAAGTAT
ATGAAGCGGTGTGTAGGGTTAATGTTACTCATAAGCAGAGAAATATAGTTTTCTCTTTTG
TACTTTGTGGAG