Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006553_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:210882336:210885962:1 gene:Zm00001d006553 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB/POZ domain-containing protein

Sequence

ATGGCGGCGGCCGCAGACGCGCCCGCGCCCGAGGCCGCGTCCACGGCCGCGCCGAGCCTG
GTGCGGATGACGGAGAAGGCGCTCGAGGAGATGCCGCACTGGCCGTGGCACGCCGTCGTG
GACGCCGTGAAGCAGTGCCAGCGCCGCCTGCTCCCGCTCGCGGACTCCACCGGCGCGTTC
GACGCGGCCGTGGCCGCGCTGGTGTCCCAGATGGCCGTGCCCCCGCCGGCCGGGGACGCC
ACGCCCACGGGCTCCTCGCCGGAGAGCACGGCGTTCCGCTTCTCGTGCGACACCAAGAGC
AGCGGCCTAAGCCTGCGCGGCGGGTCCTGCGTCAGCCGCACCTGGTGGTTCGAGGACCTC
GTCGCGCTCGCCCCCGCCACGGTGGAGCGCGTCGCCTCGGCGCTCGTGGCCAGGGGCACC
GACCACGGCGTCGTCGCCCGGTTCCTCTTCTACTACCTCAAGTGCCGCATCGCCGGCGCG
AGCGCCGACGACAAGAAGGCGATGCTGGAGGCGTCGGTCGCCGTCATGGCCAGCCTCGAC
CGGAGCGCGGTCTCCTTCAAGGGCCTCTTCGGCATCCTGAGGGTGGCCGCGCCGCTGAGG
CTAGCCGACGCGTGCCAGGACCGGCTCGTCGCCATGATCGGCCGCAAGCTGGACCACGCG
ACGCTCGATAACCTGCTCGTCCCAGCGCCGCCAGGGACGGCCAGCCTGTACGACGTGAGT
CTGGTGCTCAGGTTCTTGGCCGCGTTCCTCCGCGGCGGCGCCAGCGACGAGCCGGCGAAG
CTGAAGAAGGTGGGCGGGCTCACGGACCTGTACCTGGCCGAGGTCGCTCCGGACCCGTCC
CTTCGCCCGGCCAAGTTCCTGGATCTCGCTACCGCGCTACCGGCTCCGGCGAGGGACTGC
CACGACGCGCTGTATCGCGCCATCGACGTTTATTTCCAGGTTCACGGGCGACTGACGGAC
GAGGAGAAGATGAACATCTGCAGGGGGCTCAGCTACGAGAAGCTATCGCCGGAATGCTGC
AAGCACATGTTGCGGAACGGCGAGTTCCCGACCACGGCGGCGGTGCAAGCGCTGGCATCG
CAGCACACGGTGTTGAAGAGCGTCGTGCTGCGCGAACCGGGCCAACTGAAGTCCGTGTCG
CCATCCCCTACCGCTTCCACGGGAAAGCGCCGCGACGGCTATGACGACGACAATGGCGGC
GGCGAGAACGACGGGCAGGTGATCCTGTACGCGAGACGGCTGGACCTGTCGGTGGAGAAC
CAGAACCTGCGGTCGCTCCTTGACGGGATGCACTGGCGGGTGGTGGAGCTGGAGAAGGTG
TGCAGCCGGATGAAGACGCGGATGAGCAAGATGAAGCAGGCCAGGAGAGGCGGCGGCGGC
CGCACCGCCAGGTCGCTCCCTAGGATGTGTTCTTGA

Peptide Sequence

PEP ID

Zm00001d006553_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:210882336:210885962:1 gene:Zm00001d006553 transcript:Zm00001d006553_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB/POZ domain-containing protein

Sequence

MAAAADAPAPEAASTAAPSLVRMTEKALEEMPHWPWHAVVDAVKQCQRRLLPLADSTGAF
DAAVAALVSQMAVPPPAGDATPTGSSPESTAFRFSCDTKSSGLSLRGGSCVSRTWWFEDL
VALAPATVERVASALVARGTDHGVVARFLFYYLKCRIAGASADDKKAMLEASVAVMASLD
RSAVSFKGLFGILRVAAPLRLADACQDRLVAMIGRKLDHATLDNLLVPAPPGTASLYDVS
LVLRFLAAFLRGGASDEPAKLKKVGGLTDLYLAEVAPDPSLRPAKFLDLATALPAPARDC
HDALYRAIDVYFQVHGRLTDEEKMNICRGLSYEKLSPECCKHMLRNGEFPTTAAVQALAS
QHTVLKSVVLREPGQLKSVSPSPTASTGKRRDGYDDDNGGGENDGQVILYARRLDLSVEN
QNLRSLLDGMHWRVVELEKVCSRMKTRMSKMKQARRGGGGRTARSLPRMCS

Transcript Sequence

Transcript ID

Zm00001d006553_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:210882336:210885962:1 gene:Zm00001d006553 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB/POZ domain-containing protein

Sequence

AAGCTCCACAGCACGGCAGAGGGCGCGAGCACCAACTTTGCGTCCATTAACTGCTCAGAG
CCTCAGAGCATCAGGTGCGCTTCAGCGTCTAGCCATTTGGCGGCTTGGGCTTTCTGCGTG
GGTGCCGCATCCTCTCCCTCCCACCTTTGCTTCCATTCCATCCCCATCACCGCAGCCTTT
TTTTTTTGCCTCGCATCATCGCCATGTTGCTTTAAAGTTCAAAACTTGCGGGGTTGGGGA
GGAACGGAGTCTTAAGATGAGCGGTGTCGGTGTCGTCCTTAAGGTGGACGTCAACGGCGA
GGAGCTCTTCTTCGTTGATAAGGTGCGGTGCGGTGCGGCTCCCTCTTAGCTTGTGTTCAC
GTTCTTGCTTCCTCTTCCTCCTCCATGGATGATTATGCCATTTTAAGGTCTCTTCTTGCT
CTGCTCTCAACTCTGGTGTGTTTATGTTTCTCTCCATACACGGCGGCGGCGGCATGATGA
TGTCGATGCTTTTGGTTTTGGTGCTGTACTCTTTCCCAGATTGGCAGCTTGCTGCCCACA
GCCTAGCGGCCGGCTCTCTCTATTTTTGGACTCACTGTTGTCTAGCCGCTTGTTTCTTGT
GGACACCTTACCTTAGCCTTGGGGGATGAGTGATGCTTGGCAGCTTGCCATATCATATCC
TGCTGGAATCGAACCGGCTTCTGATTCTTCCTTCTTGTAGTTTACCTTGGCATCGTCTTC
CCCAATTCGGTCGCGTCCAACCCTTCCTCTCTGGCCTTATTCCGACGTTTTCCTCTTGAT
TTGTACCCCCGTCGCAGGTTTCCGAGACGTGTGCGGCTTGTCACACTCACACCCCGATGG
TTGGTTCCCTGCCAGTCTCCGACTGCTAGTTCCTATTTCGCCTCATGGCTTGAAAATCCT
TGCCTTGTCTGTCGTCCCATCACTTCTAGCCTGCCGTTTTGTGGGTCAAGACATCGATAG
CATGTTTGTCACACGCCACCCTGATATTTCCACTCATTATTATGCTAACCTGCAACCATG
CTTCCACATAATTTGTGTCGACGAATCACTCAGATTCATCACCCTGCACTTTTTTTTGTT
CTTGTTTCTGTTCCTCTGGAATTTTACTGACCGCGCTGTTTCTGAGAGGTGGCGGGAAGG
GCAGAGCAGCACGTCGCGACTCTTTTTCTTTACACACAGTGATGTGAAGCTGTGTCCGTT
TCCCCATCGCTGTCATCAATGAGCTCGCACCATGCCTGGTCCTTCCGTTCATATTAATGG
CGTAACTGTACCGAGCATTTCCCGCACCCGCTAACGTTCTTCTCCGTCCTCCCGCTCCAT
TCCTCCACTGCTGGGCGTTAATGGCGTAAACAGCTGCCTATAGCTCATCTTCTTGGCCGT
TTTCTATGCGAGGTTTAATGCCCGTTTGGTCACTACGACTTCCCCCCAGGCCCCCATTGA
AGAAGCTTGCTACACTCTGCTCCGCAAAGAGAGAGACCTGATCTTCTTGGCGTCGGTGTT
TAATTTGGATTCTTGCAAGTGGGTGGCGTCTCGCGTTCTTGCGGGCTTGTGCTTCTTTAA
TGCGCTGACGCTTCTTGTCCTGAATTGCCGTTGCGTTTTTTGGATACGAATTGCCGGACG
TTCTTGCGCGTTTCTGCGGTAGGATCAGGAGGCTGGTGGTCGCCGGCGCAGCGTCTGCGA
GGCGGCATCCGAGGCCGAGGGTACCACTGCACGGATTCCCCGGTGGCCCCGAGGCGTTCG
AGCTCGTCGCGAGGTTCTGCTACGCTGACGGCGGACGCGGCGGGGCGGTGACCGCGGCCA
ACGCGTGCGCGCTGCGGTGCGCGGCGGAGTTCCTGGACATGGCGGCGGCCGCAGACGCGC
CCGCGCCCGAGGCCGCGTCCACGGCCGCGCCGAGCCTGGTGCGGATGACGGAGAAGGCGC
TCGAGGAGATGCCGCACTGGCCGTGGCACGCCGTCGTGGACGCCGTGAAGCAGTGCCAGC
GCCGCCTGCTCCCGCTCGCGGACTCCACCGGCGCGTTCGACGCGGCCGTGGCCGCGCTGG
TGTCCCAGATGGCCGTGCCCCCGCCGGCCGGGGACGCCACGCCCACGGGCTCCTCGCCGG
AGAGCACGGCGTTCCGCTTCTCGTGCGACACCAAGAGCAGCGGCCTAAGCCTGCGCGGCG
GGTCCTGCGTCAGCCGCACCTGGTGGTTCGAGGACCTCGTCGCGCTCGCCCCCGCCACGG
TGGAGCGCGTCGCCTCGGCGCTCGTGGCCAGGGGCACCGACCACGGCGTCGTCGCCCGGT
TCCTCTTCTACTACCTCAAGTGCCGCATCGCCGGCGCGAGCGCCGACGACAAGAAGGCGA
TGCTGGAGGCGTCGGTCGCCGTCATGGCCAGCCTCGACCGGAGCGCGGTCTCCTTCAAGG
GCCTCTTCGGCATCCTGAGGGTGGCCGCGCCGCTGAGGCTAGCCGACGCGTGCCAGGACC
GGCTCGTCGCCATGATCGGCCGCAAGCTGGACCACGCGACGCTCGATAACCTGCTCGTCC
CAGCGCCGCCAGGGACGGCCAGCCTGTACGACGTGAGTCTGGTGCTCAGGTTCTTGGCCG
CGTTCCTCCGCGGCGGCGCCAGCGACGAGCCGGCGAAGCTGAAGAAGGTGGGCGGGCTCA
CGGACCTGTACCTGGCCGAGGTCGCTCCGGACCCGTCCCTTCGCCCGGCCAAGTTCCTGG
ATCTCGCTACCGCGCTACCGGCTCCGGCGAGGGACTGCCACGACGCGCTGTATCGCGCCA
TCGACGTTTATTTCCAGGTTCACGGGCGACTGACGGACGAGGAGAAGATGAACATCTGCA
GGGGGCTCAGCTACGAGAAGCTATCGCCGGAATGCTGCAAGCACATGTTGCGGAACGGCG
AGTTCCCGACCACGGCGGCGGTGCAAGCGCTGGCATCGCAGCACACGGTGTTGAAGAGCG
TCGTGCTGCGCGAACCGGGCCAACTGAAGTCCGTGTCGCCATCCCCTACCGCTTCCACGG
GAAAGCGCCGCGACGGCTATGACGACGACAATGGCGGCGGCGAGAACGACGGGCAGGTGA
TCCTGTACGCGAGACGGCTGGACCTGTCGGTGGAGAACCAGAACCTGCGGTCGCTCCTTG
ACGGGATGCACTGGCGGGTGGTGGAGCTGGAGAAGGTGTGCAGCCGGATGAAGACGCGGA
TGAGCAAGATGAAGCAGGCCAGGAGAGGCGGCGGCGGCCGCACCGCCAGGTCGCTCCCTA
GGATGTGTTCTTGATCCAGCTCGCCCTGCCACTAGCGCTTAGCGGTGATCGCAACACTGT
ACCATAGCGACGATGTACATACTCTAGTTGCTAGGAATCAATCAAAAGCGGATCGCAGCT
GGGATCTGTCCGG