Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006504_T028
CDS Infomation

cds chromosome:B73_RefGen_v4:2:210099105:210106998:-1 gene:Zm00001d006504 gene_biotype:protein_coding transcript_biotype:protein_coding description:Microtubule-associated protein TORTIFOLIA1
Sequence

ATGGCGACCGCGGTCTCCAAATCCGCCGTCAAATCCCACCCCAGGTTGCCCACCACAGCG
CAGCCGCCGCCGCCGAACCCCGGCTCCAACGCCGCGTCGGCTGGCGGAGGGGCGGCGCCT
CCGCCGCCGCCGTCTCCCGCCGCCGGCGCGACGCCGTCGAAGAACGCGGCGATGGCGGAG
CTCAAGTCGCGCGTGCTCGCCGCGCTCGCCAAGCTCTCGGACCGCGACACGCACCACATC
GCCGTTGAGGAGCTGGACCGCATCATCCGCGCGCCGCCGTCGACCGACGCCGTGCCCATG
CTGCTCAATGCGCTGGCACCCGACTCCCCGGGGCTCGCCTCCCCGGCCAGGCGCGAGTGT
CTGCGCCTCCTCGCCACGCTCTGCACGTCGCACCCGGATGCCGCCGCGTCGCACCTCCAC
AAGGTGCTCGCCCACCTCGCGCGTCGGCTAAAGGACCCGGCGTCCGACACTTCCGTGCGC
GACACGTGCCGAGACGTCGCGGGGCAGCTCGCGGCAGTGTACCTCCGCCCTCTGTCGGCT
TCAGGCGTTTGCGAGGCGGGCAATGCGACCGTGACGCTGTTCGTGAAGCCGCTGTTCGAG
GTGATGGGGGAGCAGAGCAAATCGGTGCAGGGCGGGGCGGCCGCATGCTTGGCCAAGGCG
GTGGAAGGGGCGGGACCTGGGCCCGGTGCCATCGGGATGTTTGGGAAGCTCGGTCCTAGG
ATTTGCAAGTTGCTCGGTGGGCAGGGCGTGCAAGCCAAGGCGGGATTACTAGGCATCATG
GGAAGTTTGGCGCAGGTGGGAGCAATCAGTTCCCAGAATATGCAGCAGACTCTGCAAAGT
ATCCGCGACTGCCTTGAGAACAGCGATTGGGCTACTAGAAAAGCAGCTGCTGATACATTA
TCTGTCTTTGCTACCCATTCTGTTCACTTGATAGGTGACGGAACAGCTCCAACCATTGCT
GCTCTCGAAGCTTGCCGTTTTGATAAGGTAAGGCCTGTCAGAGATAGCATGATTGATGCA
GTACAGTTGTGGAAAAAGTTGACTGGAGAAGATGCAAATGATGGTAGAAATAAGGATCTT
GCTGATGGTGAAGGGAAACTGGACTCAAGAAGGTCAATACAAAGAGGTGGAAAATCAGAA
TCCTTTGATGATTCCTCTCCAGATTCACCTAGTAACAACGTGAAGGGCAGTAGCATAGCT
GAAAAGGCAGCTTTTCTTTTGAAGAAAAGACCAACATTAACTGACAGGGAATTGAACCCT
GAGTTTTTCCAAAAGCTCGAGACAAGAAAAACAGATGACTTGGCAGTTGAGGTTGTAGTC
CCCCACAAGACTCTACAATCTCACTTGCGAGGTGAAGATGAAACAGAAGAAGATGATGAT
CCTGTTGGTCCAGCTGACAGCAATGGATCAGCTGAAGATGAAGCAAATCTAACTCAAATG
CGTGCTAGCTTTAATTTTCAGAATATCCGGGATAAATGGGCTGGCCAAAGGGGAAATAGA
AACAAAATTACAAAAGCTAGGACAACTGATGTTGAAGATAGGGGCGAACCCAGTACAAAA
GATTCCACTGCTGCAGCCATGAACATTTCTGGAGAAGGCCCTTTCATAAATAATAAAACA
AATTGGTTAGCAATACAGAGGCAATTGTCACACTTGGAGAGGCAGCAAACTAGTCTCATG
AACATGTTGCAGGATTTCATGGGAGGGTCTCATGACAGCATGGTTACATTGGAGAACAGA
GTACGTGGTCTTGAGAGAGTTGTTGAGGAAATGGCTAGAGAAATATCACTCTCCTCAGGC
AGGAGAGGTGGTGGTCCAGCGTTGGGCTTTGATTCATCTCCTGGCAGATCATCTAAACAC
AATGGTTTCCATGAATATTCTAATTCGAAATATGGAAGGAGTGGTGATGGACGGATGGGA
TTTGCAGAAAGGTATTTCTCTGCAGATGCTATGGCTTCTGGTACGAAAAACCAATCTTGG
AGACCAGATTCTGAACCATGGGACTCATATGCTTATTCTGGATCAAGAAGTGGTATGAAT
GTGAGGAGAGGATTAGATTCTGTTTCATCAGACAATAGAATGGCAAGAAATGAACGGAGT
AATGATCAAGTGGGTCCCCGGAGAGGTTGGGACAAAGGTCAGGGACCCTTTAGGTTCGGT
GAGGGTCCTTCTGCCCGAAGTGCATGGCGGGCCTCAAAAGATGAAGCAACACTGGAAGCT
ATTAGAGTAGCTGGTGAAGATAATGGAAATTCAAGGGCCGCTGCAAGAGTTGCTATTCCT
GAACTGGATGGAGAAGCTTTGAATGATGACAACCAAGGGGATGAAAGAGGCCCACTTTGG
GAGGCCTGGACTCGTGCGATGGATGCTGTTCATCTTGAGGATATGGACTCTGCTTATGCT
GAACTTCTTTCGACTGGTGATGCTGAATTACTTGTAAAGTTGATGGAGCAAACTGGACCG
GTCGTTGATCAACTTTCAAATGAGGTTGCAAATGAAGTCCTACATGCAGTGGGGCAGTTT
CTCATGGAAGAAAGCTTATATGACGTAGCATTAAACTGGCTTCAGCAGAATTCAGCTTTC
CCCTTTGGTGTAGAATGA

Peptide Sequence

PEP ID

Zm00001d006504_P028
PEP Infomation

pep chromosome:B73_RefGen_v4:2:210099105:210106998:-1 gene:Zm00001d006504 transcript:Zm00001d006504_T028 gene_biotype:protein_coding transcript_biotype:protein_coding description:Microtubule-associated protein TORTIFOLIA1
Sequence

MATAVSKSAVKSHPRLPTTAQPPPPNPGSNAASAGGGAAPPPPPSPAAGATPSKNAAMAE
LKSRVLAALAKLSDRDTHHIAVEELDRIIRAPPSTDAVPMLLNALAPDSPGLASPARREC
LRLLATLCTSHPDAAASHLHKVLAHLARRLKDPASDTSVRDTCRDVAGQLAAVYLRPLSA
SGVCEAGNATVTLFVKPLFEVMGEQSKSVQGGAAACLAKAVEGAGPGPGAIGMFGKLGPR
ICKLLGGQGVQAKAGLLGIMGSLAQVGAISSQNMQQTLQSIRDCLENSDWATRKAAADTL
SVFATHSVHLIGDGTAPTIAALEACRFDKVRPVRDSMIDAVQLWKKLTGEDANDGRNKDL
ADGEGKLDSRRSIQRGGKSESFDDSSPDSPSNNVKGSSIAEKAAFLLKKRPTLTDRELNP
EFFQKLETRKTDDLAVEVVVPHKTLQSHLRGEDETEEDDDPVGPADSNGSAEDEANLTQM
RASFNFQNIRDKWAGQRGNRNKITKARTTDVEDRGEPSTKDSTAAAMNISGEGPFINNKT
NWLAIQRQLSHLERQQTSLMNMLQDFMGGSHDSMVTLENRVRGLERVVEEMAREISLSSG
RRGGGPALGFDSSPGRSSKHNGFHEYSNSKYGRSGDGRMGFAERYFSADAMASGTKNQSW
RPDSEPWDSYAYSGSRSGMNVRRGLDSVSSDNRMARNERSNDQVGPRRGWDKGQGPFRFG
EGPSARSAWRASKDEATLEAIRVAGEDNGNSRAAARVAIPELDGEALNDDNQGDERGPLW
EAWTRAMDAVHLEDMDSAYAELLSTGDAELLVKLMEQTGPVVDQLSNEVANEVLHAVGQF
LMEESLYDVALNWLQQNSAFPFGVE

Transcript Sequence

Transcript ID

Zm00001d006504_T028
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:210099105:210106998:-1 gene:Zm00001d006504 gene_biotype:protein_coding transcript_biotype:protein_coding description:Microtubule-associated protein TORTIFOLIA1
Sequence

GTTATCCATTCTATTCTCACCAGCCATCGCCCATCTTTAAAAAAAAATCTTGAACCCCTC
CTTTGCCGACTCCTCTCTCCAGAAGGCCCCAACCCATCTCATCACTCACCGCTCCCAAGG
CGAGAGATCTCACCTCCCCATTCCCAAACCAACCCAAACACCAAAATTCAAACTGACGAT
CGATCCAAAAACGCCACAAATCCCACCAAATCCACCTCAAATTTGCCACAAAATGCCCCA
GATTGGCACCCAAACCCCGCACCCACCGTTTCAAATCTGACCTCGCCATTCCCACTCCTC
CCACTCTACCCACCGCATACTCCAGATCCCCACCGCAATGGCGACCGCGGTCTCCAAATC
CGCCGTCAAATCCCACCCCAGGTTGCCCACCACAGCGCAGCCGCCGCCGCCGAACCCCGG
CTCCAACGCCGCGTCGGCTGGCGGAGGGGCGGCGCCTCCGCCGCCGCCGTCTCCCGCCGC
CGGCGCGACGCCGTCGAAGAACGCGGCGATGGCGGAGCTCAAGTCGCGCGTGCTCGCCGC
GCTCGCCAAGCTCTCGGACCGCGACACGCACCACATCGCCGTTGAGGAGCTGGACCGCAT
CATCCGCGCGCCGCCGTCGACCGACGCCGTGCCCATGCTGCTCAATGCGCTGGCACCCGA
CTCCCCGGGGCTCGCCTCCCCGGCCAGGCGCGAGTGTCTGCGCCTCCTCGCCACGCTCTG
CACGTCGCACCCGGATGCCGCCGCGTCGCACCTCCACAAGGTGCTCGCCCACCTCGCGCG
TCGGCTAAAGGACCCGGCGTCCGACACTTCCGTGCGCGACACGTGCCGAGACGTCGCGGG
GCAGCTCGCGGCAGTGTACCTCCGCCCTCTGTCGGCTTCAGGCGTTTGCGAGGCGGGCAA
TGCGACCGTGACGCTGTTCGTGAAGCCGCTGTTCGAGGTGATGGGGGAGCAGAGCAAATC
GGTGCAGGGCGGGGCGGCCGCATGCTTGGCCAAGGCGGTGGAAGGGGCGGGACCTGGGCC
CGGTGCCATCGGGATGTTTGGGAAGCTCGGTCCTAGGATTTGCAAGTTGCTCGGTGGGCA
GGGCGTGCAAGCCAAGGCGGGATTACTAGGCATCATGGGAAGTTTGGCGCAGGTGGGAGC
AATCAGTTCCCAGAATATGCAGCAGACTCTGCAAAGTATCCGCGACTGCCTTGAGAACAG
CGATTGGGCTACTAGAAAAGCAGCTGCTGATACATTATCTGTCTTTGCTACCCATTCTGT
TCACTTGATAGGTGACGGAACAGCTCCAACCATTGCTGCTCTCGAAGCTTGCCGTTTTGA
TAAGGTAAGGCCTGTCAGAGATAGCATGATTGATGCAGTACAGTTGTGGAAAAAGTTGAC
TGGAGAAGATGCAAATGATGGTAGAAATAAGGATCTTGCTGATGGTGAAGGGAAACTGGA
CTCAAGAAGGTCAATACAAAGAGGTGGAAAATCAGAATCCTTTGATGATTCCTCTCCAGA
TTCACCTAGTAACAACGTGAAGGGCAGTAGCATAGCTGAAAAGGCAGCTTTTCTTTTGAA
GAAAAGACCAACATTAACTGACAGGGAATTGAACCCTGAGTTTTTCCAAAAGCTCGAGAC
AAGAAAAACAGATGACTTGGCAGTTGAGGTTGTAGTCCCCCACAAGACTCTACAATCTCA
CTTGCGAGGTGAAGATGAAACAGAAGAAGATGATGATCCTGTTGGTCCAGCTGACAGCAA
TGGATCAGCTGAAGATGAAGCAAATCTAACTCAAATGCGTGCTAGCTTTAATTTTCAGAA
TATCCGGGATAAATGGGCTGGCCAAAGGGGAAATAGAAACAAAATTACAAAAGCTAGGAC
AACTGATGTTGAAGATAGGGGCGAACCCAGTACAAAAGATTCCACTGCTGCAGCCATGAA
CATTTCTGGAGAAGGCCCTTTCATAAATAATAAAACAAATTGGTTAGCAATACAGAGGCA
ATTGTCACACTTGGAGAGGCAGCAAACTAGTCTCATGAACATGTTGCAGGATTTCATGGG
AGGGTCTCATGACAGCATGGTTACATTGGAGAACAGAGTACGTGGTCTTGAGAGAGTTGT
TGAGGAAATGGCTAGAGAAATATCACTCTCCTCAGGCAGGAGAGGTGGTGGTCCAGCGTT
GGGCTTTGATTCATCTCCTGGCAGATCATCTAAACACAATGGTTTCCATGAATATTCTAA
TTCGAAATATGGAAGGAGTGGTGATGGACGGATGGGATTTGCAGAAAGGTATTTCTCTGC
AGATGCTATGGCTTCTGGTACGAAAAACCAATCTTGGAGACCAGATTCTGAACCATGGGA
CTCATATGCTTATTCTGGATCAAGAAGTGGTATGAATGTGAGGAGAGGATTAGATTCTGT
TTCATCAGACAATAGAATGGCAAGAAATGAACGGAGTAATGATCAAGTGGGTCCCCGGAG
AGGTTGGGACAAAGGTCAGGGACCCTTTAGGTTCGGTGAGGGTCCTTCTGCCCGAAGTGC
ATGGCGGGCCTCAAAAGATGAAGCAACACTGGAAGCTATTAGAGTAGCTGGTGAAGATAA
TGGAAATTCAAGGGCCGCTGCAAGAGTTGCTATTCCTGAACTGGATGGAGAAGCTTTGAA
TGATGACAACCAAGGGGATGAAAGAGGCCCACTTTGGGAGGCCTGGACTCGTGCGATGGA
TGCTGTTCATCTTGAGGATATGGACTCTGCTTATGCTGAACTTCTTTCGACTGGTGATGC
TGAATTACTTGTAAAGTTGATGGAGCAAACTGGACCGGTCGTTGATCAACTTTCAAATGA
GGTTGCAAATGAAGTCCTACATGCAGTGGGGCAGTTTCTCATGGAAGAAAGCTTATATGA
CGTAGCATTAAACTGGCTTCAGCAGAATTCAGCTTTCCCCTTTGGTGTAGAATGAAGGCC
CATCAGTTTTCTGGATTGCTCAAGGTTGAAGCCTTGAAGGGGAAACTGTAGTGAAGTGTG
TGATTGATATTTGATCCCTCGAACAGATGTGTTCTTATCTAGTAAAACTTGTTTTTATGT
TCTTCTTTGTTTGCTCAATGATAATTATGGTTCCCACCTGGACAGCAGGTATGCGCTTGC
ATGCTTGTATGGTTGAACTAATCAAGCTGTTTCAATTCACAGGTGAAATGAATGCATCAC
TATAATCTATGTATGCCCTGACATGGTTGATTAAGGTGGAAAGATGGTTGTATCTAATAA
TGTATAAACATGAAACGTTAGAGTATGTTAGACAACACCAGTTTGCAAAGATAATACTTG
GCACATATTATTTCCTTTTTTTTGTACTCAAATGTCTGGCATTGTCTTGTTTTCATTTCT
GAGCTGAAAGCTCACTAAAAGATATCTCAATGTGCTGCAGTTGACTGATCTGGTAATGGA
AAATGGCTCTGATTATCTCGGAATACCTCTAGACGCAAAGCAGGACGTCTTACTGGGACT
TCATGAGGCGACAGCGATTGACCTGCCTGATGACTGGGAGGGAGCGACACCGTTGCAGAT
AATGAAGCAGCTAGCTTCATCCTGGCACATCGACCTACAGCAACTTATCAATTAGGGTAA
CATTGATTACCGACATATGGGTTAATTTCATTTGTTCGTTGCCTCTTGGTCTTGTCTGGC
CTGTTGCTATTAGGATTAGGAATATTATATTGGTTGGAGTGGAAGTGGCACTGTGTTGAA
ATGGATTGGTTGTATT