Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006430_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:2:207774747:207778703:-1 gene:Zm00001d006430 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

ATGGATGATGCAGCAGAAAATATTCTTGCATCACTTGGCCGTGTGCATCTCGTTGATCTA
ATGGCCTCTGAGGGCCTTCCTTCTGACAGCTATAAGATGTGTGTGTCGACTCTGATGCAG
TCACTCGCTCAATATTCGGCAGCCATCATTCAGCTGTCACCAGCTGATGGTGCCTTGTTG
AGGTCAGGTTTGGACTCGGCTCGCTTTTTCTTCCACCAGCGAGGGTATAATTCAAATGAG
GCTGTACACTCGGATGATTCCCGTGAATGGTGCAAGACCTCTGGTTACTATGTTGATTCT
CAGATGTGTCTGGAAATGTATGATTACAGGCCTGGTATTACTGCAACTGATCCCAGCGGT
GAAATGGAATTACCTCCATCAGGTTTGCCTGACATATTTTCGGTGCTGGGTAAAGTTTCT
CGAGATATATTGGACGCAATCAGTTTCTCATTGAATTTACGTAGCTGTGCATTTACTGAG
ATACTCGACAACATACCCTTGAGAAGCCAGGAAGTATCATCTTCTGTTCTTTCAGCATGT
TGTCATTCAAGGCCATCGCTTGAAGGAGGACATCAGCATAGCATTGCTTCTCAAGATAAT
GGTCACTTGCTCATGTTTTCTGAGCAGGAGCAACAGATTGATAAGACTTTGCTTACCCTA
GTTAAGTCAGATATGTCAGGTCTATATATTAAAGACTTACATGGACACTGGATTCTTGTT
GATGGAGATATTGGTCCACATGATGTTATTGTCTATTCTGGCCTTGCACTTTATCAGGAA
ACTGCTGGCTATGTAAATCCAGCTGTACATAAAACAGAGGTTGGAATACATGGATGTATG
TTTGGGCGATGCTCTTTGATGTTCAAGTTCATGCCTAGATCAGTTGCAAGGCTGAGTGGT
TCAGAGATGAGAGCTGCTGGCCATGGTGTTGATGCCCAGTTTCAGGTTCCCATACAAGTT
AATGATTTCATGCAGACAGATCGTTTTTCTGATCAACTGTTTCCTAAGACTGAACCATCA
TTACACACAGAACAAGATTCAGCATCATTCAACTCCGTGATGAATAAAAAGAAGGGAAAT
ACAAGAACAAAGCCGCTCCCTCCTTCTAAAAGACTTCGCCAAGAAGCACAGAGGGTCCTG
AAGGAGCGTGTTCAGGACATTGCAGATAAGAAAGGCGTCAAGCTGAGATTTTGCAATCTC
AAGGAATGTGAAAGCCACATCCTGTCATTGGATAGTCCATGTGAGAACACGAGAACTGAA
ATTGGATGGCCACAAGGGGTTCCGTTTGTCCATCCACATGACCTCCCAAACAAGGCAAAG
CTTGGGTTTTTGGAAGCTTACGAACCTGGATGGACGGCCTCCCAACAAGAAATGGAGGTT
GGACAACTGCTTGCGACATTGTGA

Peptide Sequence

PEP ID

Zm00001d006430_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:2:207774747:207778703:-1 gene:Zm00001d006430 transcript:Zm00001d006430_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

MDDAAENILASLGRVHLVDLMASEGLPSDSYKMCVSTLMQSLAQYSAAIIQLSPADGALL
RSGLDSARFFFHQRGYNSNEAVHSDDSREWCKTSGYYVDSQMCLEMYDYRPGITATDPSG
EMELPPSGLPDIFSVLGKVSRDILDAISFSLNLRSCAFTEILDNIPLRSQEVSSSVLSAC
CHSRPSLEGGHQHSIASQDNGHLLMFSEQEQQIDKTLLTLVKSDMSGLYIKDLHGHWILV
DGDIGPHDVIVYSGLALYQETAGYVNPAVHKTEVGIHGCMFGRCSLMFKFMPRSVARLSG
SEMRAAGHGVDAQFQVPIQVNDFMQTDRFSDQLFPKTEPSLHTEQDSASFNSVMNKKKGN
TRTKPLPPSKRLRQEAQRVLKERVQDIADKKGVKLRFCNLKECESHILSLDSPCENTRTE
IGWPQGVPFVHPHDLPNKAKLGFLEAYEPGWTASQQEMEVGQLLATL

Transcript Sequence

Transcript ID

Zm00001d006430_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:207774747:207778703:-1 gene:Zm00001d006430 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

GCTCGATGCAGCAGCAGCGACTGCAGGCGGCGCTCGACAGAAAACAACACGGCTGCGACC
GGATCTCACCGGAAAAGTTGAGGAGTGGAGGGTCTTAGCTGCCGGAGTTGGGTAATACCT
CCCTATATCCCCTATTGGTAGGTCCGCCGCTGCTCCAACCTCCAGGTCCAGGCACCAGGT
CGCTCCTCCCTTCTCTTCCCGTCGGGTTCTTGTCCATCGTAGATAGCCTCTCCTTCGCCG
AGGTCACCAGTTCCTCCTCGTGTCCTTCTCGCTAGTCGCTACAGTCCTCCTACTCTGCTT
GGCTCGAGTGGAATGGGGATCCATCCTGACCTGAGTGGTTTCTTCTTTGCTTGGTAGTCG
CGCATATTTGGTAGCCGCGTCCGCGTGACGTCGTCGGTGCTTGGGTCCATTCAGACATTG
TTCTTATTTGATCAGTACCCCTATTTAGCGCCTGCAAGATCGAGATCGATCTTACTTGAC
TCCATAAGATGTATTGGGGATTTGGAGTGCCTTGTACTCCAACTTAAGACTGGGAGTGAA
CCCGCATACCCCAAGCCCGCCCTTCCACCGAACTGAACTAGACATCCTCAAGCGTCATCA
ATTCTAATGGATGATGCAGCAGAAAATATTCTTGCATCACTTGGCCGTGTGCATCTCGTT
GATCTAATGGCCTCTGAGGGCCTTCCTTCTGACAGCTATAAGATGTGTGTGTCGACTCTG
ATGCAGTCACTCGCTCAATATTCGGCAGCCATCATTCAGCTGTCACCAGCTGATGGTGCC
TTGTTGAGGTCAGGTTTGGACTCGGCTCGCTTTTTCTTCCACCAGCGAGGGTATAATTCA
AATGAGGCTGTACACTCGGATGATTCCCGTGAATGGTGCAAGACCTCTGGTTACTATGTT
GATTCTCAGATGTGTCTGGAAATGTATGATTACAGGCCTGGTATTACTGCAACTGATCCC
AGCGGTGAAATGGAATTACCTCCATCAGGTTTGCCTGACATATTTTCGGTGCTGGGTAAA
GTTTCTCGAGATATATTGGACGCAATCAGTTTCTCATTGAATTTACGTAGCTGTGCATTT
ACTGAGATACTCGACAACATACCCTTGAGAAGCCAGGAAGTATCATCTTCTGTTCTTTCA
GCATGTTGTCATTCAAGGCCATCGCTTGAAGGAGGACATCAGCATAGCATTGCTTCTCAA
GATAATGGTCACTTGCTCATGTTTTCTGAGCAGGAGCAACAGATTGATAAGACTTTGCTT
ACCCTAGTTAAGTCAGATATGTCAGGTCTATATATTAAAGACTTACATGGACACTGGATT
CTTGTTGATGGAGATATTGGTCCACATGATGTTATTGTCTATTCTGGCCTTGCACTTTAT
CAGGAAACTGCTGGCTATGTAAATCCAGCTGTACATAAAACAGAGGTTGGAATACATGGA
TGTATGTTTGGGCGATGCTCTTTGATGTTCAAGTTCATGCCTAGATCAGTTGCAAGGCTG
AGTGGTTCAGAGATGAGAGCTGCTGGCCATGGTGTTGATGCCCAGTTTCAGGTTCCCATA
CAAGTTAATGATTTCATGCAGACAGATCGTTTTTCTGATCAACTGTTTCCTAAGACTGAA
CCATCATTACACACAGAACAAGATTCAGCATCATTCAACTCCGTGATGAATAAAAAGAAG
GGAAATACAAGAACAAAGCCGCTCCCTCCTTCTAAAAGACTTCGCCAAGAAGCACAGAGG
GTCCTGAAGGAGCGTGTTCAGGACATTGCAGATAAGAAAGGCGTCAAGCTGAGATTTTGC
AATCTCAAGGAATGTGAAAGCCACATCCTGTCATTGGATAGTCCATGTGAGAACACGAGA
ACTGAAATTGGATGGCCACAAGGGGTTCCGTTTGTCCATCCACATGACCTCCCAAACAAG
GCAAAGCTTGGGTTTTTGGAAGCTTACGAACCTGGATGGACGGCCTCCCAACAAGAAATG
GAGGTTGGACAACTGCTTGCGACATTGTGAACCTCATCCTGATCATTCCAGCCTGTTCTC
AAACCAAATTGTTCTACCAGTCCATTGCACCCTAGCAAAGTCTGAAATTTGTGTTGATTC
AGCCTTGTGCTCTGCCCTGGAGTATCAGTCACTCCAAAAAAAAACTGACTTGGATGGCAC
CTAGCCTTCTAAATGACATTCGTAAAAGTGTGCTGACCCAAGATTGTCTAATTCAAGGTT
AGTTTTGGAACC