Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d006428_T033
CDS Infomation	cds chromosome:B73_RefGen_v4:2:207716137:207742790:1 gene:Zm00001d006428 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 31 description:Protein CHROMATIN REMODELING 4
Sequence	ATGGTGCTTGTTGATGCTGCATATCTTCGTTCTGTCTCATGGGAAGTTCTTGTAGTTGAT GAGGGACATCGCCTTAAGAATTCTAGCAGCAAACTCTTTAGTTTACTTAATTCGTTATCA TTTCAGCACAGAGTTTTGTTGACTGGAACTCCTTTACAGAACAACATTGGTGAAATGTAC AACTTATTGAACTTCTTACAGCCTACTTCTTTCCCTTCTCTGTCATCATTTGAGGAGAAA TTTAATGACCTTACAACAGCAGAAAAAGTAGAGGAGCTGAAGAAACTTGTAGCTCCTCAC ATGCTTCGGAGGTTGAAAAAAGATGCAATGCAAAACATCCCTCCAAAGACAGAGCGAATG GTACCTGTTGAACTGACATCAATCCAGGCTGAATACTACCGTGCTATGCTTACAAAGAAC TATCAAGTACTGCGCAACATTGGAAAAGGTGGCGCTCACCAGTCTTTATTGAACATAGTA ATGCAGCTTCGGAAAGTCTGCAACCATCCTTATCTTATTCATGGAACTGAACCTGAATCT GGTTCACCTGAATTTTTGCATGAGATGCGCATAAAGGCCTCAGCGAAGCTAACTTTGTTG CACTCTATGCTAAAAATATTACACAAGGAAGGCCACCGTGTCCTTATATTCTCTCAGATG ACAAAACTTCTTGACATCCTTGAAGATTATCTGACTTTAGAATTTGGCCCTAAAACATTT GAAAGAGTTGATGGCTCAGTATCTGTGGCAGAGCGCCAGGCGGCGATTGCTCGCTTTAAT CAGGATAAGACACGTTTTGTTTTCTTGCTGTCTACACGATCATGTGGACTTGGTATTAAT TTGGCAACTGCAGATACTGTTATCATATATGATTCAGATTTCAACCCACATGCTGATATA CAGGCGATGAACAGGGCACACAGAATTGGACAATCGAATAGACTCCTGGTTTACAGGCTT GTGGTACGTGCTAGTGTTGAAGAGCGTATCTTGCAATTAGCCAAGAAGAAACTGATGCTT GATCAACTTTTCGTTAACAAATCAGAATCACAGAAAGAAGTGGAAGATATCATTCGCTGG GGTACAGAAGAACTCTTTGGGAGTAGTGACAGTGTGGATGGTAAAGATAGCAATGAAGCC TCAGGTTCTGTTGCTGATGTTGAATTTAAGCATAGAAGAAAAACCGGTGGCCTAGGTGAT GTTTATGAGGACAAATGTATTGGTGGTTCTACCAAACTTGTTTGGGATGAAAATGCTATT TTGAAGCTGCTTGATAGATCAAACCTTCCATCATCAGTGGCCGAAAGCACTGATGGGGAT CTGGACAATGATATGCTTGGTACTGTGAAGTCAATAGACTGGAATGATGAGCTGAATGAC CACCCTGGTACCAATGAGGATATTGCACCTATTGATAATGATGGGAGTGAGTTGGCATCT GAATCAAAGCAAGGTGCTACTAATCGTTTAGAAGAAAATGAATGGGATAAACTTTTACGT GTCAGATGGGAGCAATATCAAATAGAGGAGGAGGCATCTCTTGGTCGAGGTAAACGTTTA AGGAAGGCTGTTTCTTACAGAGAGACATTTGCAACACTTCCTAATGAAGCATTAAGTGAG GGCTCTGATGAGGGAGATGAACCAAAGAGAGAATATACAGCAGCTGGACTGGTCTTGAAG GAAAAATATGGAAAGCTTCGAGCTAGACAAAAGGAAAGGATTGCGCAGCGACACATTATC AAGAACTATGCTGTTGATAATCTTGAGGAGTTCATGACTCCATATATCTCTATTGCTAAT GAACCTGCTGAAAATCCTTTGATAATCGTAGAAGACCCAAGTTCTTCACAGCTATGTGGT GCTAAATGTTTCAGTGAATCAACTGGAGAAATGAGGCAATCCTCCAAGAAATCAAGGAGA TATTCTGAAATCCCTCAAGATCTTTATGCCAGAATTCCTGATAACGCTGCTTCATCCAAG GACAACTCAAAGGCCACCGATGTCTTCAATCCAGGGACCCCAAATCACCTGCTACCTGTA CTTGGCCTTTGTGCTCCAAATGCTGATCAGGTGAACTCATACAAAAACTCAATTTGTGCA CCAAGCATAAAGGAGCATAAAAGGGCCAGTGGTGACGTAGTCAACAAACAACTGTCAACT CCCGCTGACCATTCTAATGAGCTTAGAAACGAAGTTCAATCAGCTTCTGATAAGGTCATC TTTCCTGGTGCATCTGAGGAAGCTTTGCGAAGGATAAGTAACATGATCCCAGATAATTAT TTTCCCTTCAGTCATATTCCTCCTATATCAGGGAAGGCGGTTGATCCTGTTGAATATATT GGAGCTTCGAATGCATCATTTCAAGGGAAACTGGGTCTTCCAAACTTCAGTCTGGAAGAC AACACTCCACTTAAGCATATTAAGCCTATACCTGATATATTTCCTTACCTGTCACTGGGT GCTCATAAGGATTATATTCGTAGTTCTGTCCCAGAGTTGCCAGATAGTTCATTATTACCA AACTTCATGGCAGATATTGCTGGTACTTCAAAGCAAAAATCATTCATGTCTGGTCCACTT CCTGGGCTGGGTCTTAGCCCAGGACAACCAATCCATTTGACTATGCCTGATAATCACAAG AAAGTCTTGGACAACATAATGATGCGTGCTCAGTATGCCTCAAACAAATTCTTGAAGAAG AGATCAAAACTAGATTATTGGTCAGAGGATGAACTTGATGCTCTGTGGATAGGAGTTCGT AGGCATGGAAGGGGAAATTGGGATGCTATGCTTAGAGATCCAAAGTTAAAGTTTTTGAAC AACCGAACTAGTGAAGAGCTGGCCTCGAGATGGATTTTGGAGGAGCAAAAGATTATAGAT GAACCTATGTCTGCAGCCACAAGACGTTCTAACTCAACAGCATTTCCTGGAATATCTGAT GCAATGATGTCTCGGGCGCTCAATGAAAGTAATTTATCTAAGATGAGGATGGAGCAGCCT AAATTGCAGTCCCACGTAACTGATATTCAGTTAGGTTCGAGTGATATCCTATCCAGATTT CCTCATGTTGAGGCTCCTAATTACATTAACTCAGGGGAGGGTGGCCCACCTCAGATACCA TGGCAGGATTTCAAGCATAGATCAAGTTATGGTGGTGATTTTCCTGGCGGTGCATTTGAC AAGTTGGAGAAACCTGATGTTGGACTGATCCCGCCATTTATGCCTAATCCTTTCATGACT GATAGCATTGATTCACTTCCCATAAACAGAAAAAACAATAGTTCCATTCCGCGTAGTGAA ATCAGATCAAGTTCTCGTGAGAACATTCTTTTTTCTGGTGTTTCGGATGGACAAATCAAC TTGCTTCATGAGATGCAGCGTCATGTGAGGTCAGGCAAACAACCCATTGAGATAAAGCTC AACCACATAGACCACTCAAATCCTCAGCTTGGTAATGCTAGTGACCTCGGAGGTTTAAAA TCAAACAAGTTACCTCATTGGCTTCAGGAGGCTGTACGTGCTCCTGCTTCATCTAAGCCA CCTGAACGTGGGCTACCAGCAACTGTCTCAGCAATTGCTCAGTCCATGTGCCTTCTTCTT GGAGAACAAGAACCATCAATACCTCCATTCTTGATCCTGGGAACCCCTCTTTCTCCCCCA AAAGATCCAAGGATTAATTCAAAGAAGAGGAAACTCCGCAAAGCTCATCAATCTACCTCT CATGTAGGTGAT

Peptide Sequence

PEP ID	Zm00001d006428_P033
PEP Infomation	pep chromosome:B73_RefGen_v4:2:207716137:207742790:1 gene:Zm00001d006428 transcript:Zm00001d006428_T033 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 31 description:Protein CHROMATIN REMODELING 4
Sequence	MVLVDAAYLRSVSWEVLVVDEGHRLKNSSSKLFSLLNSLSFQHRVLLTGTPLQNNIGEMY NLLNFLQPTSFPSLSSFEEKFNDLTTAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTERM VPVELTSIQAEYYRAMLTKNYQVLRNIGKGGAHQSLLNIVMQLRKVCNHPYLIHGTEPES GSPEFLHEMRIKASAKLTLLHSMLKILHKEGHRVLIFSQMTKLLDILEDYLTLEFGPKTF ERVDGSVSVAERQAAIARFNQDKTRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADI QAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSESQKEVEDIIRW GTEELFGSSDSVDGKDSNEASGSVADVEFKHRRKTGGLGDVYEDKCIGGSTKLVWDENAI LKLLDRSNLPSSVAESTDGDLDNDMLGTVKSIDWNDELNDHPGTNEDIAPIDNDGSELAS ESKQGATNRLEENEWDKLLRVRWEQYQIEEEASLGRGKRLRKAVSYRETFATLPNEALSE GSDEGDEPKREYTAAGLVLKEKYGKLRARQKERIAQRHIIKNYAVDNLEEFMTPYISIAN EPAENPLIIVEDPSSSQLCGAKCFSESTGEMRQSSKKSRRYSEIPQDLYARIPDNAASSK DNSKATDVFNPGTPNHLLPVLGLCAPNADQVNSYKNSICAPSIKEHKRASGDVVNKQLST PADHSNELRNEVQSASDKVIFPGASEEALRRISNMIPDNYFPFSHIPPISGKAVDPVEYI GASNASFQGKLGLPNFSLEDNTPLKHIKPIPDIFPYLSLGAHKDYIRSSVPELPDSSLLP NFMADIAGTSKQKSFMSGPLPGLGLSPGQPIHLTMPDNHKKVLDNIMMRAQYASNKFLKK RSKLDYWSEDELDALWIGVRRHGRGNWDAMLRDPKLKFLNNRTSEELASRWILEEQKIID EPMSAATRRSNSTAFPGISDAMMSRALNESNLSKMRMEQPKLQSHVTDIQLGSSDILSRF PHVEAPNYINSGEGGPPQIPWQDFKHRSSYGGDFPGGAFDKLEKPDVGLIPPFMPNPFMT DSIDSLPINRKNNSSIPRSEIRSSSRENILFSGVSDGQINLLHEMQRHVRSGKQPIEIKL NHIDHSNPQLGNASDLGGLKSNKLPHWLQEAVRAPASSKPPERGLPATVSAIAQSMCLLL GEQEPSIPPFLILGTPLSPPKDPRINSKKRKLRKAHQSTSHVGD

Transcript Sequence

Transcript ID	Zm00001d006428_T033
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:207716137:207742790:1 gene:Zm00001d006428 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 31 description:Protein CHROMATIN REMODELING 4
Sequence	ACTTACGAAATGGTGCTTGTTGATGCTGCATATCTTCGTTCTGTCTCATGGGAAGTTCTT GTAGTTGATGAGGGACATCGCCTTAAGAATTCTAGCAGCAAACTCTTTAGTTTACTTAAT TCGTTATCATTTCAGCACAGAGTTTTGTTGACTGGAACTCCTTTACAGAACAACATTGGT GAAATGTACAACTTATTGAACTTCTTACAGCCTACTTCTTTCCCTTCTCTGTCATCATTT GAGGAGAAATTTAATGACCTTACAACAGCAGAAAAAGTAGAGGAGCTGAAGAAACTTGTA GCTCCTCACATGCTTCGGAGGTTGAAAAAAGATGCAATGCAAAACATCCCTCCAAAGACA GAGCGAATGGTACCTGTTGAACTGACATCAATCCAGGCTGAATACTACCGTGCTATGCTT ACAAAGAACTATCAAGTACTGCGCAACATTGGAAAAGGTGGCGCTCACCAGTCTTTATTG AACATAGTAATGCAGCTTCGGAAAGTCTGCAACCATCCTTATCTTATTCATGGAACTGAA CCTGAATCTGGTTCACCTGAATTTTTGCATGAGATGCGCATAAAGGCCTCAGCGAAGCTA ACTTTGTTGCACTCTATGCTAAAAATATTACACAAGGAAGGCCACCGTGTCCTTATATTC TCTCAGATGACAAAACTTCTTGACATCCTTGAAGATTATCTGACTTTAGAATTTGGCCCT AAAACATTTGAAAGAGTTGATGGCTCAGTATCTGTGGCAGAGCGCCAGGCGGCGATTGCT CGCTTTAATCAGGATAAGACACGTTTTGTTTTCTTGCTGTCTACACGATCATGTGGACTT GGTATTAATTTGGCAACTGCAGATACTGTTATCATATATGATTCAGATTTCAACCCACAT GCTGATATACAGGCGATGAACAGGGCACACAGAATTGGACAATCGAATAGACTCCTGGTT TACAGGCTTGTGGTACGTGCTAGTGTTGAAGAGCGTATCTTGCAATTAGCCAAGAAGAAA CTGATGCTTGATCAACTTTTCGTTAACAAATCAGAATCACAGAAAGAAGTGGAAGATATC ATTCGCTGGGGTACAGAAGAACTCTTTGGGAGTAGTGACAGTGTGGATGGTAAAGATAGC AATGAAGCCTCAGGTTCTGTTGCTGATGTTGAATTTAAGCATAGAAGAAAAACCGGTGGC CTAGGTGATGTTTATGAGGACAAATGTATTGGTGGTTCTACCAAACTTGTTTGGGATGAA AATGCTATTTTGAAGCTGCTTGATAGATCAAACCTTCCATCATCAGTGGCCGAAAGCACT GATGGGGATCTGGACAATGATATGCTTGGTACTGTGAAGTCAATAGACTGGAATGATGAG CTGAATGACCACCCTGGTACCAATGAGGATATTGCACCTATTGATAATGATGGGAGTGAG TTGGCATCTGAATCAAAGCAAGGTGCTACTAATCGTTTAGAAGAAAATGAATGGGATAAA CTTTTACGTGTCAGATGGGAGCAATATCAAATAGAGGAGGAGGCATCTCTTGGTCGAGGT AAACGTTTAAGGAAGGCTGTTTCTTACAGAGAGACATTTGCAACACTTCCTAATGAAGCA TTAAGTGAGGGCTCTGATGAGGGAGATGAACCAAAGAGAGAATATACAGCAGCTGGACTG GTCTTGAAGGAAAAATATGGAAAGCTTCGAGCTAGACAAAAGGAAAGGATTGCGCAGCGA CACATTATCAAGAACTATGCTGTTGATAATCTTGAGGAGTTCATGACTCCATATATCTCT ATTGCTAATGAACCTGCTGAAAATCCTTTGATAATCGTAGAAGACCCAAGTTCTTCACAG CTATGTGGTGCTAAATGTTTCAGTGAATCAACTGGAGAAATGAGGCAATCCTCCAAGAAA TCAAGGAGATATTCTGAAATCCCTCAAGATCTTTATGCCAGAATTCCTGATAACGCTGCT TCATCCAAGGACAACTCAAAGGCCACCGATGTCTTCAATCCAGGGACCCCAAATCACCTG CTACCTGTACTTGGCCTTTGTGCTCCAAATGCTGATCAGGTGAACTCATACAAAAACTCA ATTTGTGCACCAAGCATAAAGGAGCATAAAAGGGCCAGTGGTGACGTAGTCAACAAACAA CTGTCAACTCCCGCTGACCATTCTAATGAGCTTAGAAACGAAGTTCAATCAGCTTCTGAT AAGGTCATCTTTCCTGGTGCATCTGAGGAAGCTTTGCGAAGGATAAGTAACATGATCCCA GATAATTATTTTCCCTTCAGTCATATTCCTCCTATATCAGGGAAGGCGGTTGATCCTGTT GAATATATTGGAGCTTCGAATGCATCATTTCAAGGGAAACTGGGTCTTCCAAACTTCAGT CTGGAAGACAACACTCCACTTAAGCATATTAAGCCTATACCTGATATATTTCCTTACCTG TCACTGGGTGCTCATAAGGATTATATTCGTAGTTCTGTCCCAGAGTTGCCAGATAGTTCA TTATTACCAAACTTCATGGCAGATATTGCTGGTACTTCAAAGCAAAAATCATTCATGTCT GGTCCACTTCCTGGGCTGGGTCTTAGCCCAGGACAACCAATCCATTTGACTATGCCTGAT AATCACAAGAAAGTCTTGGACAACATAATGATGCGTGCTCAGTATGCCTCAAACAAATTC TTGAAGAAGAGATCAAAACTAGATTATTGGTCAGAGGATGAACTTGATGCTCTGTGGATA GGAGTTCGTAGGCATGGAAGGGGAAATTGGGATGCTATGCTTAGAGATCCAAAGTTAAAG TTTTTGAACAACCGAACTAGTGAAGAGCTGGCCTCGAGATGGATTTTGGAGGAGCAAAAG ATTATAGATGAACCTATGTCTGCAGCCACAAGACGTTCTAACTCAACAGCATTTCCTGGA ATATCTGATGCAATGATGTCTCGGGCGCTCAATGAAAGTAATTTATCTAAGATGAGGATG GAGCAGCCTAAATTGCAGTCCCACGTAACTGATATTCAGTTAGGTTCGAGTGATATCCTA TCCAGATTTCCTCATGTTGAGGCTCCTAATTACATTAACTCAGGGGAGGGTGGCCCACCT CAGATACCATGGCAGGATTTCAAGCATAGATCAAGTTATGGTGGTGATTTTCCTGGCGGT GCATTTGACAAGTTGGAGAAACCTGATGTTGGACTGATCCCGCCATTTATGCCTAATCCT TTCATGACTGATAGCATTGATTCACTTCCCATAAACAGAAAAAACAATAGTTCCATTCCG CGTAGTGAAATCAGATCAAGTTCTCGTGAGAACATTCTTTTTTCTGGTGTTTCGGATGGA CAAATCAACTTGCTTCATGAGATGCAGCGTCATGTGAGGTCAGGCAAACAACCCATTGAG ATAAAGCTCAACCACATAGACCACTCAAATCCTCAGCTTGGTAATGCTAGTGACCTCGGA GGTTTAAAATCAAACAAGTTACCTCATTGGCTTCAGGAGGCTGTACGTGCTCCTGCTTCA TCTAAGCCACCTGAACGTGGGCTACCAGCAACTGTCTCAGCAATTGCTCAGTCCATGTGC CTTCTTCTTGGAGAACAAGAACCATCAATACCTCCATTCTTGATCCTGGGAACCCCTCTT TCTCCCCCAAAAGATCCAAGGATTAATTCAAAGAAGAGGAAACTCCGCAAAGCTCATCAA TCTACCTCTCATGTAGGTGATT