Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d006373_T018
CDS Infomation	cds chromosome:B73_RefGen_v4:2:205996532:206013843:-1 gene:Zm00001d006373 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin protein ligase RIN2
Sequence	ATGGCGGCGGTGAACTGCCTCTACGTCGCGGCTGCCTCTACGGCGGCCAGCGCCGCCGCG CTGCAGTGGTGGGCATCCTCGCTCTTCGACGGCGACGCTGGCGCGGGCGAGGATGGAGCC TGGCTCGGAGCCGTGCTGCGGTCAAAGGTCACCGTCGCGCTCCTGGCGAATCTGGCGGTC CACGTGTTCCTCGTCATCATCCTCGCGCTCAAGACTCTATTTTTTGTTCAGCTAACTTCT ATAGAGACCAGAAAAGTGTTGGAGCACATCATTAACTATGTAATTTACAAGGGAACTTTT CTCCCACTGGTTGTGCCTCCTACTTCTCAGCAAATTATCCTTTGGTCAACTTGGTTGGTC ATTCTTTGTTCGCTGAAGATGTTTCAATCATTGGCCAGAGAACGTCTAGAGAAGCTCAAT GCTTCTCCCTCAGTGACTCCTTCAAAATATTTTCGTGTGTACTCTGCATTGCTTCTGGTT TTATCAGCTGATCTACTTTGGATGTGGCTCTGTGCAGGGTTTTGCAGCTTCTGTAATTCC AAGTTGTTTTGGCTCCTGTTCTTTGAGCCACTTAGTATTGCCTTTGATACACTGCAGTCT ATTATGGTGCATGGGTTTCAGTTATTTGACATCTGGCAGCAGCATCTAATGGAAAGTGGT GCAGACTTCCTTGATTTACAGAAATCTTATAAGCAAGCAGCAGGATCTTTTTCTGAATGG AGGGGCAAGCTTACTAGGAACTTTGGTTTTGCCATTGATTTGATAAGCTTGTTGATGTCA CTTGGTCATTACTCGATGATATTTTGGCTTCGTGGTATGGCGTTTCATCTGGTTGATGCA GTTCTCTTATTGAACTCGCGTGCTCTTATAGTTTCCTTTTTGAAGAGGATTAAAGCTCAC ATCAAGTTACGGAAGGCACTTAGTTCACTCGATGGAGCACTTCCAGATGCTACGTATGAT GAAATTTGTGCATATGATGATGAGTGTGCCATCTGCAGGGGACCAATGGGTCGAGCTAAA AAGTTGTCATGCAACCATCTATTTCATCTAGCTTGTTTGCGGTCATGGTTGGATCAAGGA CTAATGGAAGGTTACTCCTGTCCAACTTGTCGGAGACCGCTCTTATTGTCATCTGAAGGG CAAAGAAGGTCTACAACTGCGGAGGTAGCAAATGTTCAGCGAATTGCGGAACAACTTACT ATGGGGATGAATCAGCAGAGAGTTCCTGGTAATGAACATCCTGTTGAACAGCAGAACCCT TCAGATGCTGTTTGGAGAGGTGCTGGTCTGGATGCTAGCTGGATTCCACCGTGGTCAAGC CCTGTGATGGACCATCCGAGTTCCTCCAGTGCAGTGAGGTCAGTAGGTCTTACTGGAGTT CAGATGATGATGACGCAGTTGGCTTCTGTCACCGACAATTATGGGCATGCTGATGGTACC TGGAACCTATGGCCTGAACCGATGGCAGGGTCCTCTCTTGTTCCTTCCACTTCCTCGATT TCCGGCACTGCATCTGCTTCTGGATTGCGGCTCCGTGGTAGTGCAGGCATAAGCAACGGG AGTCTTTCGGAGGTACTCACTATGGTAGATAGAGTGCGGGAAGTTCTACCTCATATCCCT GATGAGCTAATCTTAGAGGTATGTGTCTGTCTCGCACAACTCTGGTCATAG

Peptide Sequence

PEP ID	Zm00001d006373_P018
PEP Infomation	pep chromosome:B73_RefGen_v4:2:205996532:206013843:-1 gene:Zm00001d006373 transcript:Zm00001d006373_T018 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin protein ligase RIN2
Sequence	MAAVNCLYVAAASTAASAAALQWWASSLFDGDAGAGEDGAWLGAVLRSKVTVALLANLAV HVFLVIILALKTLFFVQLTSIETRKVLEHIINYVIYKGTFLPLVVPPTSQQIILWSTWLV ILCSLKMFQSLARERLEKLNASPSVTPSKYFRVYSALLLVLSADLLWMWLCAGFCSFCNS KLFWLLFFEPLSIAFDTLQSIMVHGFQLFDIWQQHLMESGADFLDLQKSYKQAAGSFSEW RGKLTRNFGFAIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNSRALIVSFLKRIKAH IKLRKALSSLDGALPDATYDEICAYDDECAICRGPMGRAKKLSCNHLFHLACLRSWLDQG LMEGYSCPTCRRPLLLSSEGQRRSTTAEVANVQRIAEQLTMGMNQQRVPGNEHPVEQQNP SDAVWRGAGLDASWIPPWSSPVMDHPSSSSAVRSVGLTGVQMMMTQLASVTDNYGHADGT WNLWPEPMAGSSLVPSTSSISGTASASGLRLRGSAGISNGSLSEVLTMVDRVREVLPHIP DELILEVCVCLAQLWS

Transcript Sequence

Transcript ID	Zm00001d006373_T018
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:205996532:206013843:-1 gene:Zm00001d006373 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin protein ligase RIN2
Sequence	GGCTCAGCCTCGCCATCGCTCGCGGCATCGCCGCTTGCCCTCCCCTTCCCCAAGCGAATA AAGTGCCGGAAGCGCGCGCGTCAAGCGAAGCCCTCGCCCCCGCGCTCCGCTCAGGATCGG GAGCCACCCCCTAGGGTTAGGGCTCGGTTTTGCATCGTTCCGGCGTCGACCGATGCGCGG CGCATGGCGGCGGTGAACTGCCTCTACGTCGCGGCTGCCTCTACGGCGGCCAGCGCCGCC GCGCTGCAGTGGTGGGCATCCTCGCTCTTCGACGGCGACGCTGGCGCGGGCGAGGATGGA GCCTGGCTCGGAGCCGTGCTGCGGTCAAAGGTCACCGTCGCGCTCCTGGCGAATCTGGCG GTCCACGTGTTCCTCGTCATCATCCTCGCGCTCAAGACTCTATTTTTTGTTCAGCTAACT TCTATAGAGACCAGAAAAGTGTTGGAGCACATCATTAACTATGTAATTTACAAGGGAACT TTTCTCCCACTGGTTGTGCCTCCTACTTCTCAGCAAATTATCCTTTGGTCAACTTGGTTG GTCATTCTTTGTTCGCTGAAGATGTTTCAATCATTGGCCAGAGAACGTCTAGAGAAGCTC AATGCTTCTCCCTCAGTGACTCCTTCAAAATATTTTCGTGTGTACTCTGCATTGCTTCTG GTTTTATCAGCTGATCTACTTTGGATGTGGCTCTGTGCAGGGTTTTGCAGCTTCTGTAAT TCCAAGTTGTTTTGGCTCCTGTTCTTTGAGCCACTTAGTATTGCCTTTGATACACTGCAG TCTATTATGGTGCATGGGTTTCAGTTATTTGACATCTGGCAGCAGCATCTAATGGAAAGT GGTGCAGACTTCCTTGATTTACAGAAATCTTATAAGCAAGCAGCAGGATCTTTTTCTGAA TGGAGGGGCAAGCTTACTAGGAACTTTGGTTTTGCCATTGATTTGATAAGCTTGTTGATG TCACTTGGTCATTACTCGATGATATTTTGGCTTCGTGGTATGGCGTTTCATCTGGTTGAT GCAGTTCTCTTATTGAACTCGCGTGCTCTTATAGTTTCCTTTTTGAAGAGGATTAAAGCT CACATCAAGTTACGGAAGGCACTTAGTTCACTCGATGGAGCACTTCCAGATGCTACGTAT GATGAAATTTGTGCATATGATGATGAGTGTGCCATCTGCAGGGGACCAATGGGTCGAGCT AAAAAGTTGTCATGCAACCATCTATTTCATCTAGCTTGTTTGCGGTCATGGTTGGATCAA GGACTAATGGAAGGTTACTCCTGTCCAACTTGTCGGAGACCGCTCTTATTGTCATCTGAA GGGCAAAGAAGGTCTACAACTGCGGAGGTAGCAAATGTTCAGCGAATTGCGGAACAACTT ACTATGGGGATGAATCAGCAGAGAGTTCCTGGTAATGAACATCCTGTTGAACAGCAGAAC CCTTCAGATGCTGTTTGGAGAGGTGCTGGTCTGGATGCTAGCTGGATTCCACCGTGGTCA AGCCCTGTGATGGACCATCCGAGTTCCTCCAGTGCAGTGAGGTCAGTAGGTCTTACTGGA GTTCAGATGATGATGACGCAGTTGGCTTCTGTCACCGACAATTATGGGCATGCTGATGGT ACCTGGAACCTATGGCCTGAACCGATGGCAGGGTCCTCTCTTGTTCCTTCCACTTCCTCG ATTTCCGGCACTGCATCTGCTTCTGGATTGCGGCTCCGTGGTAGTGCAGGCATAAGCAAC GGGAGTCTTTCGGAGGTACTCACTATGGTAGATAGAGTGCGGGAAGTTCTACCTCATATC CCTGATGAGCTAATCTTAGAGGTATGTGTCTGTCTCGCACAACTCTGGTCATAGTTAGTT CTTGTGACTTTACATACACTGACTCCTTTCCTTGTTTTCGTTCTCACTTCTTGATGTAGG ATTTGATGAGGACAAACAACATAAACGCGACTGTGAATAATCTTCTGCTGATGCAATAGT AGATACGTCAATACAACATATAAGTGTGACGTTTACTGGCTATAAAAGCTTATAAGAAAA GTATGTGTATAGCTAAGGGCGAGCCTGGGTGTAACACGTCTTTGGTTCTGTAATAAAAGC CCTTTTTTCT