Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006350_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:2:205338860:205342832:1 gene:Zm00001d006350 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase/endoribonuclease IRE1a
Sequence

ATGGTGCTTGTGAGAAATGACTATTCTCTTAGTGCATCAGATCTTGGCAAGCATTTATTT
AACTGGACAAGAACTTCTTTCTCTGTGAAATACAACCACCCTGACATTCCATGCATCAGA
AGTGAGGGTTTGCCACTTGCTTTACCTGATTCACGTTCAGCTAATGTAATTGTCTTGAAA
GAAGGTACCCCTTTTATTTCCATCCATGGTTCTGATGCCCTGGAACCAGTTCAAACCCCA
AGGAAGCTACCAAACACTGCTGGGAAGTCAGATATCGTATTGGATGATTCTCAAAATCAA
ACGTATGATGGTGCTCGATCTCATGTCATCTCTGCTGATTCTGAAGCTACCGAAACCCCC
ACTAGGAACACTTATGTATGGTTATTTTCTTTTTTCCCCATATTTTTGGTCATTGGTTAT
CTGTTGAGCTTGACCTCTGCAAGCAAGTCTTGCAGGCAATTTGTGATTCAGCTTATTAAG
CCATTCACGCGCGACAAGAAATCGGTGGACATTAGAGGCAGGTCAGAGGGATCTCCTAAA
AGAAGAAAAACACGGAAGAAGGATGGACTTGTCAATAGCCCTGAGACCTTGACAGCATCT
GACAAGGAGTGCAGTGAAACTGGTGGGTCAACTGAGGCACCAATGGAAAATTCTGCACTA
AAAGATGCCCTTGGTGGTCGTCACATTGGTAAACTATATGTCTCCAATAAAGAAATTGGT
AGAGGGAGCAATGGCACAGTTGTTTTTGAAGGATCGTATGATGGTCGTCAAGTTGCTGTT
AAACGTCTGCTGCGTTCCCACAATGACATAGCTGAAAAGGAGACTCAGAATCTTATTATA
TCTGATCATGATCCAAATATTGTTAGACTATATGGTTGTGACTATGACAGCGATTTTGTT
TATATCTCCCTTGAGAGGTGTCACTGCAGTTTGGCTGATCTAATTCAAAAACACTCATAT
CTGTCTTCTGGAGAGTCTGTTTCTAACAATGAGGCCAGTTTCAGCATCAAGTCAAAGATT
TCAAATGTTAAGGGAATGGATGTGGAATTGTGGACACATGATGGGCTTCCTTCAGCACAA
CTCCTGAAGCTGATGAGAGATGTGGTTGCTGGCCTTGTGCATCTGCATGACTTGGGAATT
ATTCATCGTGATTTGAAGCCTCAAAATGTCTTAATAAGCGCAGGAGGACCTATTAGAGCA
AAGCTTTCTGATATGGGTATCAGTAAGCACCTGCAAGATGACATGACTTCTGTTAGCCAT
CATGGTACAGGATTTGGAAGCTCTGGCTGGCGGGCACCTGAACAGCTTCGTCATGGTCGT
CAAACTCGTGCAATGGATCTTTTTAGTTTGGGCTGCCTTATTTTCTATTGTATCACTAAA
GGCAAGCATCCGTTTGGTGAGTACTATGAAAGGGATGTGAACATTGCAAACAATCGCTTT
GATCTCTTTATGGTGGACTACATACCAGAAGCAGTCCATCTTATATCTCATTTGTTACAA
CCAAACCCAGAGGCAAGCTAA

Peptide Sequence

PEP ID

Zm00001d006350_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:2:205338860:205342832:1 gene:Zm00001d006350 transcript:Zm00001d006350_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase/endoribonuclease IRE1a
Sequence

MVLVRNDYSLSASDLGKHLFNWTRTSFSVKYNHPDIPCIRSEGLPLALPDSRSANVIVLK
EGTPFISIHGSDALEPVQTPRKLPNTAGKSDIVLDDSQNQTYDGARSHVISADSEATETP
TRNTYVWLFSFFPIFLVIGYLLSLTSASKSCRQFVIQLIKPFTRDKKSVDIRGRSEGSPK
RRKTRKKDGLVNSPETLTASDKECSETGGSTEAPMENSALKDALGGRHIGKLYVSNKEIG
RGSNGTVVFEGSYDGRQVAVKRLLRSHNDIAEKETQNLIISDHDPNIVRLYGCDYDSDFV
YISLERCHCSLADLIQKHSYLSSGESVSNNEASFSIKSKISNVKGMDVELWTHDGLPSAQ
LLKLMRDVVAGLVHLHDLGIIHRDLKPQNVLISAGGPIRAKLSDMGISKHLQDDMTSVSH
HGTGFGSSGWRAPEQLRHGRQTRAMDLFSLGCLIFYCITKGKHPFGEYYERDVNIANNRF
DLFMVDYIPEAVHLISHLLQPNPEAS

Transcript Sequence

Transcript ID

Zm00001d006350_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:205338860:205342832:1 gene:Zm00001d006350 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase/endoribonuclease IRE1a
Sequence

CGTACTAATTATGACAGCGATAATATCATGGTGCTTGTGAGAAATGACTATTCTCTTAGT
GCATCAGATCTTGGCAAGCATTTATTTAACTGGACAAGAACTTCTTTCTCTGTGAAATAC
AACCACCCTGACATTCCATGCATCAGAAGTGAGGGTTTGCCACTTGCTTTACCTGATTCA
CGTTCAGCTAATGTAATTGTCTTGAAAGAAGGTACCCCTTTTATTTCCATCCATGGTTCT
GATGCCCTGGAACCAGTTCAAACCCCAAGGAAGCTACCAAACACTGCTGGGAAGTCAGAT
ATCGTATTGGATGATTCTCAAAATCAAACGTATGATGGTGCTCGATCTCATGTCATCTCT
GCTGATTCTGAAGCTACCGAAACCCCCACTAGGAACACTTATGTATGGTTATTTTCTTTT
TTCCCCATATTTTTGGTCATTGGTTATCTGTTGAGCTTGACCTCTGCAAGCAAGTCTTGC
AGGCAATTTGTGATTCAGCTTATTAAGCCATTCACGCGCGACAAGAAATCGGTGGACATT
AGAGGCAGGTCAGAGGGATCTCCTAAAAGAAGAAAAACACGGAAGAAGGATGGACTTGTC
AATAGCCCTGAGACCTTGACAGCATCTGACAAGGAGTGCAGTGAAACTGGTGGGTCAACT
GAGGCACCAATGGAAAATTCTGCACTAAAAGATGCCCTTGGTGGTCGTCACATTGGTAAA
CTATATGTCTCCAATAAAGAAATTGGTAGAGGGAGCAATGGCACAGTTGTTTTTGAAGGA
TCGTATGATGGTCGTCAAGTTGCTGTTAAACGTCTGCTGCGTTCCCACAATGACATAGCT
GAAAAGGAGACTCAGAATCTTATTATATCTGATCATGATCCAAATATTGTTAGACTATAT
GGTTGTGACTATGACAGCGATTTTGTTTATATCTCCCTTGAGAGGTGTCACTGCAGTTTG
GCTGATCTAATTCAAAAACACTCATATCTGTCTTCTGGAGAGTCTGTTTCTAACAATGAG
GCCAGTTTCAGCATCAAGTCAAAGATTTCAAATGTTAAGGGAATGGATGTGGAATTGTGG
ACACATGATGGGCTTCCTTCAGCACAACTCCTGAAGCTGATGAGAGATGTGGTTGCTGGC
CTTGTGCATCTGCATGACTTGGGAATTATTCATCGTGATTTGAAGCCTCAAAATGTCTTA
ATAAGCGCAGGAGGACCTATTAGAGCAAAGCTTTCTGATATGGGTATCAGTAAGCACCTG
CAAGATGACATGACTTCTGTTAGCCATCATGGTACAGGATTTGGAAGCTCTGGCTGGCGG
GCACCTGAACAGCTTCGTCATGGTCGTCAAACTCGTGCAATGGATCTTTTTAGTTTGGGC
TGCCTTATTTTCTATTGTATCACTAAAGGCAAGCATCCGTTTGGTGAGTACTATGAAAGG
GATGTGAACATTGCAAACAATCGCTTTGATCTCTTTATGGTGGACTACATACCAGAAGCA
GTCCATCTTATATCTCATTTGTTACAACCAAACCCAGAGGCAAGCTAACAGACCGACAGC
AGTATATGTCATGCACCATCCACTCTTTTGGAGCCCTGAATTGCGTCTTTCGTTTCTAAG
GGATACCAGTGACAGAATTGAGAAAACCAGTGAAACTGACCTCATAAACACACTGGAAAG
CATAGGATCTTTGGCGTTTGGTGGAAAATGGGGAGAGAAATTGGATGCTGCTTTGGTTAC
AGACATGGGTCGTTATAGAAAATATAACTTTGGGTCTATTCGTGATCTTCTGAGGTATAT
CAGAAATAAATCGGGTCATTACAGAGAACTTTCAGATGATCTCAAGGGCATACTTGGGTC
ACTACCAGAGGGGTTTGATCGCTATTTTGCTAGCCGATTTCCAAAGTTGCTAATTGAGGT
GTACAAGGTCTTGTGGGTGCACTGCAAGGACGAGGAAGCTTTCAGTAAATATTTCAAAGG
AAGTTAGTTATAGCTGGAGAGGATTGTCCTTTCCTACTGTACATACTAACCCTGATGTAG
AACAAGTACATGTGTACCATATGACTCGTATTATAGGATAAAAAAGAGCTCAATCTGTAC
ATTATGCACC