Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006317_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:2:204325712:204331251:-1 gene:Zm00001d006317 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RF4
Sequence

ATGTCTACTATCGCGACCCCGCCGCCGCCATCGGCGGCGCAAGAGAAGGCCGCCAGCCGG
AATAAGCGAAAGTACCGTGCCGAGACACCATCCACGGAGTTGGGCCCATTCGGGCTGGAG
TACCCACTGACGACGGACTGCGTGGGATTCGAGTTTATGTCGCCCGAGAAGGTTGCCATG
GCAGCCGCGGTAGCCGCCGCTGAGGGTGTCAGCCTTGACCTCCTCCAGAACTCGTGCGAA
AACTGCAAGGATCTCCACCCTACTGCGGAGGACTTGTTGGAGTGCCAGCGATATGTGAAT
TGGGGTGACCCAAATGAGATGCAGCTGGAGGAGATCCTTCTCAAGAGTCTGGACACCACC
TTTGACAATAGTGTGAGTCTGATCACCACAATGGGCTACTCTGAGGCGGCCGCACGTGCT
GCTATTATGCGGACAGCTGCGCAATACGACTGGAGGGAGAGCCTTGCTGGGTTTGGAGAG
GCGGCGGTTGAGGTTCTCAAGACGGAAGGGGACATGTTGCCAAGGGAGGGTGCCTCTGTT
GAAGACATGAGGAAGATTGAGGAGGCTGTGCTTGGCAGTATGGTTACGTTGGTAACTGAG
GCTCAGCCATTCAACACCCCAGGCGATGTAATGTATTGCTTGCTTATGTCGGATATGAAT
GTGGCAAATGCATGTGCCATGGACTATAACAGTTTCTCCCTCCCAGCTGTGTCTGCTCAA
GTTATTGCCCAACCAGTCGCGGGAAACTACGAACCCGGTTCAGGTTCAAATTTGTCAGTT
TCTATTACCAACCCGCAGACTGGCGTTACTTTCCGTGGAAAACTTACCCCAGTGCCACCT
GGCTCGTATGGTGCTATAAAAGCTGATTCATCAACGGCACAAGCAAGCCCGAATGTATCA
AATACCGAACCCTCGGTATCGGACAAGACTCAGTGTGTCATCCCGAATATTGAGCCAAAA
AAACACCATGTTCCTATATGTGATCATTCAGAGGACCAACCATTTGTTGCTGCTGCGACA
CAATCTGTGAAAAATGACAAGTCGTCCCCAAGCAAGAGGGGGGGCTCTAAGAGGGACTCC
TTTCATCGGCAGAAGTTGACGAACTATGATAAAAGTTCCCGAGCATTGGGTTCCAAAGGC
TCTCTTAGGTCTGGCAAGCAAAGCTCTTCAGCCAGTGCAGTATTGGAGAGGAAGTGCAGG
TCATTTTCCGATTCTACTACTAGCAACTTGAAGGGCTCATCAAGAGTTGCTAAAGGGTTT
GCTGCAAGCATATCTGGATCAGAAGTATCAGTTGACCTTTCCTTTACTGGTACCCTTTCC
CCTTCTCCATCATTTGATGCCAAGGTAGTTAGTAACTCAAACTCAGCACCTGCTGCTAGC
ACAGATCTTTCATTGGCATTGTCCTCAAGTGATAGTTTAACACCATCTTTGAGTCATGAT
TCCAATACTGAGGTAGTGGACTCTAGTAGCAAAATTAATTTTTCATATGATGAAGAACAG
AAGGTCTGGATCCCACAAGATAAAAAGGATGAAATTGTCTTGATTCTTGTCCAGAGGCAG
AAAGAACTGCAAGCACATACACGTGACTGGACAGACTGGGCTCAACAGAAAGTGATGCAG
GTCGCACACCGACTTGCAAAGGAGAAGGATGAACTTCAGTCACTCAGGAAAGAGAAGGAA
GAGGCAGACCGTCTGCAAGAAGAGAGGCATCATTTGGAAGAGAGTACTCGGAAAAAGCTT
CTAGAGATGGAGTCTGCAATTTCTAGGGCAAATGCTCAGTTGGAGAAGGCAGAAGCTTCT
GCTCGCAGACGTGAGGTTGAGAATGCACAACTTACGTTACAGATGGAAGCTGCAAAGCGA
CATGCAGCAGAGTCAGCAACAAACATTTCAGAGCTTGTAAAGAAGGATGAGAACAGTCGC
AAAAGGTCTCAGCGTTGGCAATCTGACAGAGCCCTGTTACAAGAGGATCTTGCAGCACAA
AAGAGCAGGTTATCTCGGGTCCAAGAACACCTTCAGCATGCTAAAGAGCTAAAGGATCAA
GTGCAGGCAAGATGGAAACAAGAGGAAGCTGGAAAGATTGAGGTAATTGCCCTTGTAACC
TCAAAGAAGAAAGAGAGGGAGCAAATTGAGACCTCCATGAGGTCAGAAGAGAATTTACTG
CATCTTAAAGCAGCGAATGACACAGAAAGATACAAGAGTGAGATCCGTGCTCTTGAGCAG
CGTATTGCACAGATGAAGGTTTCTTTGGACTCTTCAAAGGTTGCTGCCCCCAAGTGGGGT
GCTGACAATAAAACATATGCATTGCATCTTTCTGAAGGGAGAAAGAACAGCAGTGCCCAA
ATTTTGTCCAACATAGCAGTACCCCAAGATCCCAGTTTTGATGATATACAGCGTGACCGG
GAGTGCGTCATGTGCTTGAGTGAGGAGATGTCCGTGGTGTTCCTCCCTTGCGCCCACCAG
GTGGTCTGTGCCAAATGCAGCGACCTCCATGAGAAGCAAGGGATGAAGGAATGCCCTTCA
TGCCGGACCCCCATCCAGCGCAGGGTGCGCGCCCGCCCCGCAGGTTGCTAG

Peptide Sequence

PEP ID

Zm00001d006317_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:2:204325712:204331251:-1 gene:Zm00001d006317 transcript:Zm00001d006317_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RF4
Sequence

MSTIATPPPPSAAQEKAASRNKRKYRAETPSTELGPFGLEYPLTTDCVGFEFMSPEKVAM
AAAVAAAEGVSLDLLQNSCENCKDLHPTAEDLLECQRYVNWGDPNEMQLEEILLKSLDTT
FDNSVSLITTMGYSEAAARAAIMRTAAQYDWRESLAGFGEAAVEVLKTEGDMLPREGASV
EDMRKIEEAVLGSMVTLVTEAQPFNTPGDVMYCLLMSDMNVANACAMDYNSFSLPAVSAQ
VIAQPVAGNYEPGSGSNLSVSITNPQTGVTFRGKLTPVPPGSYGAIKADSSTAQASPNVS
NTEPSVSDKTQCVIPNIEPKKHHVPICDHSEDQPFVAAATQSVKNDKSSPSKRGGSKRDS
FHRQKLTNYDKSSRALGSKGSLRSGKQSSSASAVLERKCRSFSDSTTSNLKGSSRVAKGF
AASISGSEVSVDLSFTGTLSPSPSFDAKVVSNSNSAPAASTDLSLALSSSDSLTPSLSHD
SNTEVVDSSSKINFSYDEEQKVWIPQDKKDEIVLILVQRQKELQAHTRDWTDWAQQKVMQ
VAHRLAKEKDELQSLRKEKEEADRLQEERHHLEESTRKKLLEMESAISRANAQLEKAEAS
ARRREVENAQLTLQMEAAKRHAAESATNISELVKKDENSRKRSQRWQSDRALLQEDLAAQ
KSRLSRVQEHLQHAKELKDQVQARWKQEEAGKIEVIALVTSKKKEREQIETSMRSEENLL
HLKAANDTERYKSEIRALEQRIAQMKVSLDSSKVAAPKWGADNKTYALHLSEGRKNSSAQ
ILSNIAVPQDPSFDDIQRDRECVMCLSEEMSVVFLPCAHQVVCAKCSDLHEKQGMKECPS
CRTPIQRRVRARPAGC

Transcript Sequence

Transcript ID

Zm00001d006317_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:204325712:204331251:-1 gene:Zm00001d006317 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RF4
Sequence

CATCAGAGCCCTTCTTCCTCCGCCTCCCCTTCACCCCCATCTCGCCATACGCTTATCGCC
CATCCCCTGATCACCAGCCGCCGCCGCCACCGCCTCGATCCCGTCCGGTTTTTTCCTTGA
TAATGCGCGTGGCAACCTTGTCAGTTCAATCCGTCCGTGAAGAACTTATCCTTATTTTCG
TTTGCATCGCATCGCTTCTGCGTTTGGGGGAAAAAGGGCCGCGTCCTTGATGTCTACTAT
CGCGACCCCGCCGCCGCCATCGGCGGCGCAAGAGAAGGCCGCCAGCCGGAATAAGCGAAA
GTACCGTGCCGAGACACCATCCACGGAGTTGGGCCCATTCGGGCTGGAGTACCCACTGAC
GACGGACTGCGTGGGATTCGAGTTTATGTCGCCCGAGAAGGTTGCCATGGCAGCCGCGGT
AGCCGCCGCTGAGGGTGTCAGCCTTGACCTCCTCCAGAACTCGTGCGAAAACTGCAAGGA
TCTCCACCCTACTGCGGAGGACTTGTTGGAGTGCCAGCGATATGTGAATTGGGGTGACCC
AAATGAGATGCAGCTGGAGGAGATCCTTCTCAAGAGTCTGGACACCACCTTTGACAATAG
TGTGAGTCTGATCACCACAATGGGCTACTCTGAGGCGGCCGCACGTGCTGCTATTATGCG
GACAGCTGCGCAATACGACTGGAGGGAGAGCCTTGCTGGGTTTGGAGAGGCGGCGGTTGA
GGTTCTCAAGACGGAAGGGGACATGTTGCCAAGGGAGGGTGCCTCTGTTGAAGACATGAG
GAAGATTGAGGAGGCTGTGCTTGGCAGTATGGTTACGTTGGTAACTGAGGCTCAGCCATT
CAACACCCCAGGCGATGTAATGTATTGCTTGCTTATGTCGGATATGAATGTGGCAAATGC
ATGTGCCATGGACTATAACAGTTTCTCCCTCCCAGCTGTGTCTGCTCAAGTTATTGCCCA
ACCAGTCGCGGGAAACTACGAACCCGGTTCAGGTTCAAATTTGTCAGTTTCTATTACCAA
CCCGCAGACTGGCGTTACTTTCCGTGGAAAACTTACCCCAGTGCCACCTGGCTCGTATGG
TGCTATAAAAGCTGATTCATCAACGGCACAAGCAAGCCCGAATGTATCAAATACCGAACC
CTCGGTATCGGACAAGACTCAGTGTGTCATCCCGAATATTGAGCCAAAAAAACACCATGT
TCCTATATGTGATCATTCAGAGGACCAACCATTTGTTGCTGCTGCGACACAATCTGTGAA
AAATGACAAGTCGTCCCCAAGCAAGAGGGGGGGCTCTAAGAGGGACTCCTTTCATCGGCA
GAAGTTGACGAACTATGATAAAAGTTCCCGAGCATTGGGTTCCAAAGGCTCTCTTAGGTC
TGGCAAGCAAAGCTCTTCAGCCAGTGCAGTATTGGAGAGGAAGTGCAGGTCATTTTCCGA
TTCTACTACTAGCAACTTGAAGGGCTCATCAAGAGTTGCTAAAGGGTTTGCTGCAAGCAT
ATCTGGATCAGAAGTATCAGTTGACCTTTCCTTTACTGGTACCCTTTCCCCTTCTCCATC
ATTTGATGCCAAGGTAGTTAGTAACTCAAACTCAGCACCTGCTGCTAGCACAGATCTTTC
ATTGGCATTGTCCTCAAGTGATAGTTTAACACCATCTTTGAGTCATGATTCCAATACTGA
GGTAGTGGACTCTAGTAGCAAAATTAATTTTTCATATGATGAAGAACAGAAGGTCTGGAT
CCCACAAGATAAAAAGGATGAAATTGTCTTGATTCTTGTCCAGAGGCAGAAAGAACTGCA
AGCACATACACGTGACTGGACAGACTGGGCTCAACAGAAAGTGATGCAGGTCGCACACCG
ACTTGCAAAGGAGAAGGATGAACTTCAGTCACTCAGGAAAGAGAAGGAAGAGGCAGACCG
TCTGCAAGAAGAGAGGCATCATTTGGAAGAGAGTACTCGGAAAAAGCTTCTAGAGATGGA
GTCTGCAATTTCTAGGGCAAATGCTCAGTTGGAGAAGGCAGAAGCTTCTGCTCGCAGACG
TGAGGTTGAGAATGCACAACTTACGTTACAGATGGAAGCTGCAAAGCGACATGCAGCAGA
GTCAGCAACAAACATTTCAGAGCTTGTAAAGAAGGATGAGAACAGTCGCAAAAGGTCTCA
GCGTTGGCAATCTGACAGAGCCCTGTTACAAGAGGATCTTGCAGCACAAAAGAGCAGGTT
ATCTCGGGTCCAAGAACACCTTCAGCATGCTAAAGAGCTAAAGGATCAAGTGCAGGCAAG
ATGGAAACAAGAGGAAGCTGGAAAGATTGAGGTAATTGCCCTTGTAACCTCAAAGAAGAA
AGAGAGGGAGCAAATTGAGACCTCCATGAGGTCAGAAGAGAATTTACTGCATCTTAAAGC
AGCGAATGACACAGAAAGATACAAGAGTGAGATCCGTGCTCTTGAGCAGCGTATTGCACA
GATGAAGGTTTCTTTGGACTCTTCAAAGGTTGCTGCCCCCAAGTGGGGTGCTGACAATAA
AACATATGCATTGCATCTTTCTGAAGGGAGAAAGAACAGCAGTGCCCAAATTTTGTCCAA
CATAGCAGTACCCCAAGATCCCAGTTTTGATGATATACAGCGTGACCGGGAGTGCGTCAT
GTGCTTGAGTGAGGAGATGTCCGTGGTGTTCCTCCCTTGCGCCCACCAGGTGGTCTGTGC
CAAATGCAGCGACCTCCATGAGAAGCAAGGGATGAAGGAATGCCCTTCATGCCGGACCCC
CATCCAGCGCAGGGTGCGCGCCCGCCCCGCAGGTTGCTAGATTTCACATATACCATTTGG
ATTTTATCCTGTTTTTTTTGTTTTACCTTGATTGCTCAGCTTGAGTTGATGGAAGATTGG
AGAGAATAATGGGGGGGATGTGAGTGGTGAAACTTGGACAATAATACATCGTTAAACATC
AAACAAGCCCCAGCGGACAGTGGGTACTGGTTGGGTTTGTTATATGGATATACCGGCCGC
TTCTGAATGCTTTGGTTTTGTTGCACTCTGCTTCTTAGTCCTGTCTGTACTGTTT