Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d006296_T033
CDS Infomation	cds chromosome:B73_RefGen_v4:2:204005900:204009230:1 gene:Zm00001d006296 gene_biotype:protein_coding transcript_biotype:protein_coding description:Valine--tRNA ligase mitochondrial 1
Sequence	ATGAGCTTGGGTGTTTGTTCAAGAACTAATGATGTAGTGGAACCTATGATAAAACCACAG TGGTTTGTTAATTGCAACCACATGGCCAAGGCGGGCCTTGACGCTGTAAGGTCGAAAAAG ATTGAAATTATTCCCCAGCAGTATGAGCAAGACTGGTACAGATGGCTTGAAAATATACGT GATTGGTGTGTCTCAAGGCAACTTTGGTGGGGACATCGTGTACCTGCATGGTATGTGACA CTAGAGGATGACCTGGATAAAAACCTTGGTTCTGCAAATGATCGCTGGATAGTCGCAAGA AACGAAAGCGATGCAAACCTTGAAGCGCAGAAAAAGTATGCAGGAAAGAAATTACGTCTA GATCAAGACCCTGATGTGCTGGATACTTGGTTTTCATCTGGTCTTTTCCCCTTAACAGTA CTTGGTTGGCCATCTGATACCGCTGACCTCCGTGCTTTCTACCCTACATCGGTACTAGAA ACTGGACTTGATATTCTCTTCTTTTGGGTAGCAAGGATGGTGATGATGGGAATGCAACTT GGTGGTGATGTGCCATTTCAGAAGGTTTATTTACATCCTATGATTCGGGATGCACATGGC CGAAAGATGTCAAAATCACTTGGTAACGTTGTTGATCCTCTTGAGGTGATAAATGGCATG TCGCTGGATGGTCTTCTGAAACGTTTGGAAGAAGGCAATCTGGATCCAAATGAATTAAAC ATTGCAAGAGATGGGAAGAAGAAGGATTTTCCTGATGGCATAGCAGAATGTGGTACCGAT GCTCTACGCTTTGCACTGATATCGTACACTTCCCAGTCTGACAGGATAAATCTTGATATT AAGAGGGTGGTTGGATACAGACAGTGGTGCAACAAATTATGGAATGCCATCCGTTTTGCG ATGGGCAAACTGGGTGACCATTACATTCCGCCGGCAACTGTTGATGTGTCTCTTATGCCA CCAATCTGCAAGTGGATACTCTCGGTGCTTAGCAAGGCCGTTGGGAAAACCGTTTCCTCT TTAGAAGCATATAAGTTGTCTGACGCAACATCTGCTATATACTCATGGTGGCAGTATCAG CTATGTGATGTATTTATAGAAGCTATCAAACCTTACTTCTTCAACGATTCTCAAGAGCTT GAATCAGCAAGAGCTGCCTCCAGAGATACCCTGTGGATTTGCCTGGATACTGGGCTGCGC TTGCTCCACCCATTCATGCCCTTTGTAACAGAAGAGCTCTGGCAGCGTCTTCCACAGCCC AAAGATTCTTGTAGGAAAGGTTCGATTATGATTTCACAGTATCCATCTCTTGTTGAGGAA TGGAGTAATGGCAGACTTGAAAATGAAATGGACATCGTCTTGGATGCTGTGAACAAAATA AGGTCTCTGAAGCCACCAACAGATTCAAATGAAAGACGTCCTGCTTTTGCACTTTGCCGA GGCCAAGAGATCGCTGCCACAATCCAGTGCTATCAATCTCTAATCGTGTATCTTTCTTCC ATATCACATCTCAAGATCCTGACAGAGAATGATGAAACTCCAGCCGATTGTGCAACTGCT GTTGTCAACAAAGACTTGTCTGTGTACCTTCAGCTCCAAGGAGCTTTAAATGCAGACGCT GAACGTGAAAAGCTAAAGAAGAAAAAAGATGAGATTCAAAAGCTACAGAATGCACTGGCG CAGAAAATGGACGCCTCTGGCTATCGCGAGAAGGCTCCACAGAGCGTACAGGAGGAGGAC ATGAGGAAGCTCACCGCTTTGTTGGAGCAACTAGAGGTCATCAGTGAAGCTGAGAAGAAA TTAGACGCGAACTGA

Peptide Sequence

PEP ID	Zm00001d006296_P033
PEP Infomation	pep chromosome:B73_RefGen_v4:2:204005900:204009230:1 gene:Zm00001d006296 transcript:Zm00001d006296_T033 gene_biotype:protein_coding transcript_biotype:protein_coding description:Valine--tRNA ligase mitochondrial 1
Sequence	MSLGVCSRTNDVVEPMIKPQWFVNCNHMAKAGLDAVRSKKIEIIPQQYEQDWYRWLENIR DWCVSRQLWWGHRVPAWYVTLEDDLDKNLGSANDRWIVARNESDANLEAQKKYAGKKLRL DQDPDVLDTWFSSGLFPLTVLGWPSDTADLRAFYPTSVLETGLDILFFWVARMVMMGMQL GGDVPFQKVYLHPMIRDAHGRKMSKSLGNVVDPLEVINGMSLDGLLKRLEEGNLDPNELN IARDGKKKDFPDGIAECGTDALRFALISYTSQSDRINLDIKRVVGYRQWCNKLWNAIRFA MGKLGDHYIPPATVDVSLMPPICKWILSVLSKAVGKTVSSLEAYKLSDATSAIYSWWQYQ LCDVFIEAIKPYFFNDSQELESARAASRDTLWICLDTGLRLLHPFMPFVTEELWQRLPQP KDSCRKGSIMISQYPSLVEEWSNGRLENEMDIVLDAVNKIRSLKPPTDSNERRPAFALCR GQEIAATIQCYQSLIVYLSSISHLKILTENDETPADCATAVVNKDLSVYLQLQGALNADA EREKLKKKKDEIQKLQNALAQKMDASGYREKAPQSVQEEDMRKLTALLEQLEVISEAEKK LDAN

Transcript Sequence

Transcript ID	Zm00001d006296_T033
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:204005900:204009230:1 gene:Zm00001d006296 gene_biotype:protein_coding transcript_biotype:protein_coding description:Valine--tRNA ligase mitochondrial 1
Sequence	GGGGTTGTATAAGGACACAAAGAAGAATGAAATGAGCTTGGGTGTTTGTTCAAGAACTAA TGATGTAGTGGAACCTATGATAAAACCACAGTGGTTTGTTAATTGCAACCACATGGCCAA GGCGGGCCTTGACGCTGTAAGGTCGAAAAAGATTGAAATTATTCCCCAGCAGTATGAGCA AGACTGGTACAGATGGCTTGAAAATATACGTGATTGGTGTGTCTCAAGGCAACTTTGGTG GGGACATCGTGTACCTGCATGGTATGTGACACTAGAGGATGACCTGGATAAAAACCTTGG TTCTGCAAATGATCGCTGGATAGTCGCAAGAAACGAAAGCGATGCAAACCTTGAAGCGCA GAAAAAGTATGCAGGAAAGAAATTACGTCTAGATCAAGACCCTGATGTGCTGGATACTTG GTTTTCATCTGGTCTTTTCCCCTTAACAGTACTTGGTTGGCCATCTGATACCGCTGACCT CCGTGCTTTCTACCCTACATCGGTACTAGAAACTGGACTTGATATTCTCTTCTTTTGGGT AGCAAGGATGGTGATGATGGGAATGCAACTTGGTGGTGATGTGCCATTTCAGAAGGTTTA TTTACATCCTATGATTCGGGATGCACATGGCCGAAAGATGTCAAAATCACTTGGTAACGT TGTTGATCCTCTTGAGGTGATAAATGGCATGTCGCTGGATGGTCTTCTGAAACGTTTGGA AGAAGGCAATCTGGATCCAAATGAATTAAACATTGCAAGAGATGGGAAGAAGAAGGATTT TCCTGATGGCATAGCAGAATGTGGTACCGATGCTCTACGCTTTGCACTGATATCGTACAC TTCCCAGTCTGACAGGATAAATCTTGATATTAAGAGGGTGGTTGGATACAGACAGTGGTG CAACAAATTATGGAATGCCATCCGTTTTGCGATGGGCAAACTGGGTGACCATTACATTCC GCCGGCAACTGTTGATGTGTCTCTTATGCCACCAATCTGCAAGTGGATACTCTCGGTGCT TAGCAAGGCCGTTGGGAAAACCGTTTCCTCTTTAGAAGCATATAAGTTGTCTGACGCAAC ATCTGCTATATACTCATGGTGGCAGTATCAGCTATGTGATGTATTTATAGAAGCTATCAA ACCTTACTTCTTCAACGATTCTCAAGAGCTTGAATCAGCAAGAGCTGCCTCCAGAGATAC CCTGTGGATTTGCCTGGATACTGGGCTGCGCTTGCTCCACCCATTCATGCCCTTTGTAAC AGAAGAGCTCTGGCAGCGTCTTCCACAGCCCAAAGATTCTTGTAGGAAAGGTTCGATTAT GATTTCACAGTATCCATCTCTTGTTGAGGAATGGAGTAATGGCAGACTTGAAAATGAAAT GGACATCGTCTTGGATGCTGTGAACAAAATAAGGTCTCTGAAGCCACCAACAGATTCAAA TGAAAGACGTCCTGCTTTTGCACTTTGCCGAGGCCAAGAGATCGCTGCCACAATCCAGTG CTATCAATCTCTAATCGTGTATCTTTCTTCCATATCACATCTCAAGATCCTGACAGAGAA TGATGAAACTCCAGCCGATTGTGCAACTGCTGTTGTCAACAAAGACTTGTCTGTGTACCT TCAGCTCCAAGGAGCTTTAAATGCAGACGCTGAACGTGAAAAGCTAAAGAAGAAAAAAGA TGAGATTCAAAAGCTACAGAATGCACTGGCGCAGAAAATGGACGCCTCTGGCTATCGCGA GAAGGCTCCACAGAGCGTACAGGAGGAGGACATGAGGAAGCTCACCGCTTTGTTGGAGCA ACTAGAGGTCATCAGTGAAGCTGAGAAGAAATTAGACGCGAACTGAGTTTGACCTCTGTT TCGAAGAGGCCTTGCTTGTACCGAAGCTGACCCCATATTTTTCTTGTTTGCAAAAAAGCT CAGTTATGTGCCTGTACGCTCGGGCTCAGGTTTACAGTTGATGGTTCAAATGGAAGCCAC ATTTTTGCAGCTTGTCAAGGGTGCACTGGCTAATACAGAAGCATATTTATTTTGTCAAGT GAGGAACTTTTGATGAT