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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006263_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:203194535:203195885:1 gene:Zm00001d006263 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence

ATGGAGGTGAAGGTGCTGAGCTCCAAGCTCGTGAAACCGTCCTACCCGGCGGGCGCGCCG
CGGCCGGACACCACGGAGCACGTGCCGTCGTCGGTGTTCGACAAGGCCACGTACCACATG
CAGATGGCCATCATCTACGCCTTCTCTCCGCCGGTCCCGTCCCCAGACGCCATCGAGCGC
GGCCTCGCCGCGGTGCTGGGCGCCTACCGGCTCTTCGCCGGCCAGGTCCGCCCGGGCCCG
GACGGCGCGCCAGGGGTGCTGCTCAACGACCACGGCGCCCGCCTCGTGGAGGCGTCCGTG
GACGCGCGCCTCGCCGACATCGCCCCCACGAAGCCGTCCCCCGCCGTGCTGCGGCTGCAC
CCGGACCTAGACGGCAGCGACATCGAGGAGCCAGTGGTGCAGGTGCAGCTCACGCGGTTC
GCGTGCGGCTCGCTCGCCGTGGGCTTCACCGCCAACCACGCCGTGGCGGACGGCCACGCC
ACCAGCGACTTCCTCGTCGCCTGGGGCCGCGCCGCGCGCGGGCTCCCCGTCGGCCCGTCG
CCGCCGGTCCACCGCCCGGGCCTCTTCCCGCCGCGCCACGACCCGCCGCGCGCCGGGTTC
GAGCACCGCGGCGTGGAGTACTACAAGCCCGCGCCGTCGTCGGCCCACGTCCACGTCCAC
GGCCACGGCGACACTACGACCCAGCACAGCATCGTGATCCACAAGGCTCACTTCACCAAG
GACTTCGTGGCGGGGCTCCGCGCCAGGGCGTCCGAAGGCCGTGGCCGTCCCTTCAGCCGG
TTCGAGACGATCCTCGCCCACGTCTGGCGCACCATGACGCGCGCGCGCGGGCTGGGCAGC
AACCCGCTCCAGACCTCCACCATCCGCATCTCCGTGGACGGGAGGCCGCGCCTCGCGGCG
GCGCCGGCAGACTACTTCGGGAACCTGGTCCTCTGGGCGTTCCCGCGCGCCACGGTGGGG
AGCCTCCTCGGCCGGCCGCTGAAGCACGCGGCGCAGGTGATCCACGACGCCGTGGCGCGG
GTGGACGGCGCCTACTTCCAGTCGTTCGTCGACTTCGCGGGCTCCGGCGCGGTGGAGAAG
GAAGGGCTGGAGACGACAGCCCTGCTCAAGGACGTGCTGTGCCCGGACCTGGAGGTGGAC
AGCTGGCTCACCTTCCCGTTCTACGAGCTGGACTTGGGCGCCGGCAACCCGAGCTACTTC
ATGCCGTCCTACTTCCCCACGGAGGGCATGCTGTTCCTGGTGCCTTCGTACCTGGGCGAC
GGCAGCGTCGACGCCTTCGTGCCGATGTTCGAGCAAAACCTGGAGGCGTTCAAGCAGTGC
TGCTACTCCATGGAGTAG

Peptide Sequence

PEP ID

Zm00001d006263_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:203194535:203195885:1 gene:Zm00001d006263 transcript:Zm00001d006263_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence

MEVKVLSSKLVKPSYPAGAPRPDTTEHVPSSVFDKATYHMQMAIIYAFSPPVPSPDAIER
GLAAVLGAYRLFAGQVRPGPDGAPGVLLNDHGARLVEASVDARLADIAPTKPSPAVLRLH
PDLDGSDIEEPVVQVQLTRFACGSLAVGFTANHAVADGHATSDFLVAWGRAARGLPVGPS
PPVHRPGLFPPRHDPPRAGFEHRGVEYYKPAPSSAHVHVHGHGDTTTQHSIVIHKAHFTK
DFVAGLRARASEGRGRPFSRFETILAHVWRTMTRARGLGSNPLQTSTIRISVDGRPRLAA
APADYFGNLVLWAFPRATVGSLLGRPLKHAAQVIHDAVARVDGAYFQSFVDFAGSGAVEK
EGLETTALLKDVLCPDLEVDSWLTFPFYELDLGAGNPSYFMPSYFPTEGMLFLVPSYLGD
GSVDAFVPMFEQNLEAFKQCCYSME

Transcript Sequence

Transcript ID

Zm00001d006263_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:203194535:203195885:1 gene:Zm00001d006263 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence

CATCCATCTCGCCATGGAGGTGAAGGTGCTGAGCTCCAAGCTCGTGAAACCGTCCTACCC
GGCGGGCGCGCCGCGGCCGGACACCACGGAGCACGTGCCGTCGTCGGTGTTCGACAAGGC
CACGTACCACATGCAGATGGCCATCATCTACGCCTTCTCTCCGCCGGTCCCGTCCCCAGA
CGCCATCGAGCGCGGCCTCGCCGCGGTGCTGGGCGCCTACCGGCTCTTCGCCGGCCAGGT
CCGCCCGGGCCCGGACGGCGCGCCAGGGGTGCTGCTCAACGACCACGGCGCCCGCCTCGT
GGAGGCGTCCGTGGACGCGCGCCTCGCCGACATCGCCCCCACGAAGCCGTCCCCCGCCGT
GCTGCGGCTGCACCCGGACCTAGACGGCAGCGACATCGAGGAGCCAGTGGTGCAGGTGCA
GCTCACGCGGTTCGCGTGCGGCTCGCTCGCCGTGGGCTTCACCGCCAACCACGCCGTGGC
GGACGGCCACGCCACCAGCGACTTCCTCGTCGCCTGGGGCCGCGCCGCGCGCGGGCTCCC
CGTCGGCCCGTCGCCGCCGGTCCACCGCCCGGGCCTCTTCCCGCCGCGCCACGACCCGCC
GCGCGCCGGGTTCGAGCACCGCGGCGTGGAGTACTACAAGCCCGCGCCGTCGTCGGCCCA
CGTCCACGTCCACGGCCACGGCGACACTACGACCCAGCACAGCATCGTGATCCACAAGGC
TCACTTCACCAAGGACTTCGTGGCGGGGCTCCGCGCCAGGGCGTCCGAAGGCCGTGGCCG
TCCCTTCAGCCGGTTCGAGACGATCCTCGCCCACGTCTGGCGCACCATGACGCGCGCGCG
CGGGCTGGGCAGCAACCCGCTCCAGACCTCCACCATCCGCATCTCCGTGGACGGGAGGCC
GCGCCTCGCGGCGGCGCCGGCAGACTACTTCGGGAACCTGGTCCTCTGGGCGTTCCCGCG
CGCCACGGTGGGGAGCCTCCTCGGCCGGCCGCTGAAGCACGCGGCGCAGGTGATCCACGA
CGCCGTGGCGCGGGTGGACGGCGCCTACTTCCAGTCGTTCGTCGACTTCGCGGGCTCCGG
CGCGGTGGAGAAGGAAGGGCTGGAGACGACAGCCCTGCTCAAGGACGTGCTGTGCCCGGA
CCTGGAGGTGGACAGCTGGCTCACCTTCCCGTTCTACGAGCTGGACTTGGGCGCCGGCAA
CCCGAGCTACTTCATGCCGTCCTACTTCCCCACGGAGGGCATGCTGTTCCTGGTGCCTTC
GTACCTGGGCGACGGCAGCGTCGACGCCTTCGTGCCGATGTTCGAGCAAAACCTGGAGGC
GTTCAAGCAGTGCTGCTACTCCATGGAGTAG