Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d006212_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:2:201957666:201963946:-1 gene:Zm00001d006212 gene_biotype:protein_coding transcript_biotype:protein_coding description:Two-component response regulator-like APRR9
Sequence	ATGCTGCCAAGGATGCCGGTGCGCGTGCTACTCGCCGAGGGCGACGACTCCACGCGCCAC GTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAGTTGCTGCAGCCTCTGATGGTGTG AAGGCGTGGGACATATTAAAGGAAAAATCTTTCAACATAGACCTTGTTTTAACTGAAGTT GAACTGCCTTTGATGTCTGGGTTCCTCTTGTTATCCACGATCATGGAGCATGATGCATCC AAGAACATCCCTGTTATAATGATGTCTTCACACGACTCTGTAAGCATGGTTTTCAAATGC ATGCTAAAGGGTGCATCAGATTTCCTTGTTAAGCCGCTAAGAAAGAACGAATTAAGGAAC TTGTGGCAGCACGTTTGGAGAAAACAACTGGCAAACGGTGGGCCCGATGTGCAGCACATA CAAGAAGAGAATCTTGCAGAAAGAATGGAACAGAAGACTGGCGTGACAAAAGATGATAAT TTGAACAGCGATGGTCCCTGTAAAAATAGAGAATGCAGTGAACAAGAAAGTGATGCTCAA AGTTCTTGCACAAGGTCAGAGTTGGAGGCTGAAAGTAAGCAAACTAACAACATTTTGGAG TATATGCAATCAACTGAAAGGCATTTGTCTATTCGTAGCCACAAGGATTTAGAGCTAAAT GGAGAGACCAAAACACGAACTAAGGGTAATAACTTGATTCCAACAAGAGAAGACGATTTA TTGCCAAAGAAAAGAACATGTTTGAATGACAATAATTCTGAGAGAACTTCCAGAGATATG GAGCTAGTCCACATTATGGACAATCAGCAGAAGCATGACACACAGAGGGATGTGGATACT ATGAGAACAACATCCAGGAGAAATGATGAGAAGAACTCCATCCCAGCACACCAGTTGGAA CTTTCTCTTAGAAGAACTGACTATGGAAAATTAGAGAACCACGAGAAAAATGATAGAAGA ACACTGAACCATTCAACTTCATCTGCATTTTACTTGTATAATTGCAGGACAGCGTCCAGC TTAGGAAATGCTGGTGATGGTCAATTATGCAGCACCTCAGAAACACTAGTGGATGTTGAA AATAGAAATGGAGATTTGGCAGCTCTGTCTGAAGACACGACTGAAACAAATCGTCCTCCT ATCAGAGTTGTACCATTTCCTGTCCCTGTTCAATGCTTCACATTTGATGGGCAGCCGTTC TGGAATGGTACACCGGTGGCATCTCCATTCTACCCACAGTCAGCTCCCCCCATTTGGAAT AGCAAAACACCAACGTGGCAAGAATCAACTCCACAAGCAACTTCACTGCCACAAAAATCG CAACAGAAAGAACCAGTTGAAATGGATGCTAAACCAGTTGAAAATGCAGAGGAACAATTT GTCGTAGGTCCTCCCAGTGCCAGTGGGAAGCAGCTGCATGTTGAAATTCCTAAAGATGAT CTACGGCATATTTCTCCTGTGACCGGTGAAAGTGGAATCAGTACGGTGCTAGACAGCACC AGAAATACTCTGAGCAGCAGTGGCTGTGATAGCACTTCCAACCAGATCACCGCCCCTACT GAACCATCATCCAATGTATACAGGGGCGTTCCTGAAACCGCAAGAGCCGAAGGTTTACGA CACCTGAGCCAGCGTGAGGCTGCACTGAACAAGTTCCGGCTAAAGAGGAAGGACAGATGC TTTGAGAAGAAGGTTCGGTACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTC AAGGGCCAGTTTGTCCGTCAAGATCATAGCATCCAAGGAAGCTAG

Peptide Sequence

PEP ID	Zm00001d006212_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:2:201957666:201963946:-1 gene:Zm00001d006212 transcript:Zm00001d006212_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Two-component response regulator-like APRR9
Sequence	MLPRMPVRVLLAEGDDSTRHVISALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEV ELPLMSGFLLLSTIMEHDASKNIPVIMMSSHDSVSMVFKCMLKGASDFLVKPLRKNELRN LWQHVWRKQLANGGPDVQHIQEENLAERMEQKTGVTKDDNLNSDGPCKNRECSEQESDAQ SSCTRSELEAESKQTNNILEYMQSTERHLSIRSHKDLELNGETKTRTKGNNLIPTREDDL LPKKRTCLNDNNSERTSRDMELVHIMDNQQKHDTQRDVDTMRTTSRRNDEKNSIPAHQLE LSLRRTDYGKLENHEKNDRRTLNHSTSSAFYLYNCRTASSLGNAGDGQLCSTSETLVDVE NRNGDLAALSEDTTETNRPPIRVVPFPVPVQCFTFDGQPFWNGTPVASPFYPQSAPPIWN SKTPTWQESTPQATSLPQKSQQKEPVEMDAKPVENAEEQFVVGPPSASGKQLHVEIPKDD LRHISPVTGESGISTVLDSTRNTLSSSGCDSTSNQITAPTEPSSNVYRGVPETARAEGLR HLSQREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQDHSIQGS

Transcript Sequence

Transcript ID	Zm00001d006212_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:201957666:201963946:-1 gene:Zm00001d006212 gene_biotype:protein_coding transcript_biotype:protein_coding description:Two-component response regulator-like APRR9
Sequence	GCCTTTTCTTCCGGCTTCCAACTTCCAAGTGGCGACTGCTGCCGACTGCCGGGTGCGAGA AGAGGGAGGAGGAAGAGGCAGAGGCCGCGGCGGCGGAGGGGTCGAGCAAGGAGACGCCGA TGCTGCCAAGGATGCCGGTGCGCGTGCTACTCGCCGAGGGCGACGACTCCACGCGCCACG TCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAGTTGCTGCAGCCTCTGATGGTGTGA AGGCGTGGGACATATTAAAGGAAAAATCTTTCAACATAGACCTTGTTTTAACTGAAGTTG AACTGCCTTTGATGTCTGGGTTCCTCTTGTTATCCACGATCATGGAGCATGATGCATCCA AGAACATCCCTGTTATAATGATGTCTTCACACGACTCTGTAAGCATGGTTTTCAAATGCA TGCTAAAGGGTGCATCAGATTTCCTTGTTAAGCCGCTAAGAAAGAACGAATTAAGGAACT TGTGGCAGCACGTTTGGAGAAAACAACTGGCAAACGGTGGGCCCGATGTGCAGCACATAC AAGAAGAGAATCTTGCAGAAAGAATGGAACAGAAGACTGGCGTGACAAAAGATGATAATT TGAACAGCGATGGTCCCTGTAAAAATAGAGAATGCAGTGAACAAGAAAGTGATGCTCAAA GTTCTTGCACAAGGTCAGAGTTGGAGGCTGAAAGTAAGCAAACTAACAACATTTTGGAGT ATATGCAATCAACTGAAAGGCATTTGTCTATTCGTAGCCACAAGGATTTAGAGCTAAATG GAGAGACCAAAACACGAACTAAGGGTAATAACTTGATTCCAACAAGAGAAGACGATTTAT TGCCAAAGAAAAGAACATGTTTGAATGACAATAATTCTGAGAGAACTTCCAGAGATATGG AGCTAGTCCACATTATGGACAATCAGCAGAAGCATGACACACAGAGGGATGTGGATACTA TGAGAACAACATCCAGGAGAAATGATGAGAAGAACTCCATCCCAGCACACCAGTTGGAAC TTTCTCTTAGAAGAACTGACTATGGAAAATTAGAGAACCACGAGAAAAATGATAGAAGAA CACTGAACCATTCAACTTCATCTGCATTTTACTTGTATAATTGCAGGACAGCGTCCAGCT TAGGAAATGCTGGTGATGGTCAATTATGCAGCACCTCAGAAACACTAGTGGATGTTGAAA ATAGAAATGGAGATTTGGCAGCTCTGTCTGAAGACACGACTGAAACAAATCGTCCTCCTA TCAGAGTTGTACCATTTCCTGTCCCTGTTCAATGCTTCACATTTGATGGGCAGCCGTTCT GGAATGGTACACCGGTGGCATCTCCATTCTACCCACAGTCAGCTCCCCCCATTTGGAATA GCAAAACACCAACGTGGCAAGAATCAACTCCACAAGCAACTTCACTGCCACAAAAATCGC AACAGAAAGAACCAGTTGAAATGGATGCTAAACCAGTTGAAAATGCAGAGGAACAATTTG TCGTAGGTCCTCCCAGTGCCAGTGGGAAGCAGCTGCATGTTGAAATTCCTAAAGATGATC TACGGCATATTTCTCCTGTGACCGGTGAAAGTGGAATCAGTACGGTGCTAGACAGCACCA GAAATACTCTGAGCAGCAGTGGCTGTGATAGCACTTCCAACCAGATCACCGCCCCTACTG AACCATCATCCAATGTATACAGGGGCGTTCCTGAAACCGCAAGAGCCGAAGGTTTACGAC ACCTGAGCCAGCGTGAGGCTGCACTGAACAAGTTCCGGCTAAAGAGGAAGGACAGATGCT TTGAGAAGAAGGTTCGGTACCAGAGCCGGAAATTACTCGCAGAGCAGCGTCCACGGGTCA AGGGCCAGTTTGTCCGTCAAGATCATAGCATCCAAGGAAGCTAGGGTCCAGTTACTGAGC TGGAACTCTTTCCCATTATCTACAAAAAAAAGTCACTGTAAGTGACTCCACTGCGGGGTA CCCTGATGTCAGGTTTTTTCGAAGAGTTGGAAGCAACCACACTGAGTTACGGTTTGCTGT GTATGTTTGCTAAAGCTTGTAATATATGTATGTATAGGCTGACTCTTTTCTTTCCTTAGG TTAGGCACAGGACCTGGCACGTTCTAGACGGTTTGTCGGTAGACGTTAAAAAATACAGGC ATACTTGTGTCCTCCAGTAGCACGTGTGCTTTAAGCCTTGTATTATGTAACTAGCCAAGT TGTTTTTGATGTTTCGGATTAGATGTACACTGTGGATGTATGGCGTGAAGGATGTCCACC AAAGTATGCTCGTTTCTGTGTAGCTTGTTGCAATGAACATTGTTGGCCTGGTTTT