Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d006124_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:2:199251572:199256700:1 gene:Zm00001d006124 gene_biotype:protein_coding transcript_biotype:protein_coding description:CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (so /.../NCBI BLink).
Sequence	ATGTCCGCCAGGTTGCTCCGGCGAGTCCTCCAGGAGCGTGAGGCCACCCCGCAGGACACC GACGTCGCCGACGACGACCAGTCGGTGGAGGAGGAGGCTTCTCCTCCGCGGTCCTCCGCG CGGAACCTCTTCGATCTCCTCGACGACGGAAACGGCGACGGCGGCGAAGAAGATGAAAAG GAAGATGAAACAGAAATAATTCAAGCTGTGAGCTATACAGAACAGAGACATTCTGTGCAA AAGAAAGCGAACGCTGTTCCCGAAACAAACAAAAAATCCAAGAAAAAGAAAAAAAAGAGC AAGGCGGAGCCGTCATCAACAAAGGCAAAGGATGCACAGTCGTTGGAGTCAATTCTGGAA GACTTATGTATTGAAAAGAATCCAATACAACAAAGAGCTCATCAGAGTGACAGGGCAGCT GGAAAGGAATTTGAGACAAATGAAGCTACTCATGTGGCATCCTCTGTTCTTGCAATAGAC CCAAAACATCTAAAGGGTGAAAATGAGATGAGGCGCATTTTTGGATCAAAGGTAGTGGAT TCATTTGAAAATCAACGGAGTATGCCAAGCAGTTCAAGGCAAGTACGTGGTGCTAGGCGT GTTGCCCATAATCCAAGAAAAACTCTTCTTGTGTCTCCACCTAGCTACTGGCCACCATGG GATAAGTCAATAACAATGGATCTTCTTGAGATGAAGAATGGTTTGAATTACTTCAGGTAC ACATATGACCCTTCAGTCAGCCATGTGCAGGAATTATTTGAAGCCGCCAAAGCAGCAAAT GATCTCAATGCTATTGCAGCTATATTAGGGAAATATCCATATCATCCAGAATCACTGTTG ACATTTGCTGAGCTTTTCAAATATTCTGGAGAGCATCAATCATCAGCAGATGCAGTGGAG AAATGCCTATTTGCATTGGAGTGTGCTTGGCATCCTTTATTTAGCCCACTTCAGGGCAAC TATCAGTTGAAATTCAACCATGACACAAATAAGCCACTGTTTACAGCACTCTTTAGTCAC ATGAAAAATCTGGATAGGCGTGGCTGCCATCGGTCTGCTTTAGAGGTCTGCAAGTTTCTG TTGTCACTGGACTTCGATGATCCAAAGGGTTCTCTATTTTGCATTGATTACTTTGCTCTA AGATCACAACAGTACAAATGGCTGGAGCAATTTGCAGAAGAGTACCAGTGTGATAACTCC TTGTGGTTATTTCCGAATTTCTCATTTTCTCTTGCTACTGCACGGTTTTACCTTGAGTGT GATGCAGCGTCAGAGGGTTCTGATGATGCTGACAAATCAACATCTCTTGATCTCATGAAG CAAGCTCTGATGCTTCATCCTATGGTGCTTCGCAAGATAGTTGACAAGGCTCCTCTGAAA GACTCATCATGGACCCAAATACTCAGAAATGTATTCTTTGGATCAGCAAAACCGGGAAGC CCTTCACTTGAGCATATGATCAATATATATGTGGAACGCCATTATATCATGTGGAGATTC CCAGAACTGCAGAACTTGCTGAAAGAGGCTGCTCTTTTGGTGATTGAATCACTAAAGCAG GATAACAGAGAAGCCCTGGACTGGGCTTGTGTTAGAAAAGAAGCATTCTCGTCAGACAAG AATGAGTACTCTCATCTGCTTGTTTCAGACTTCACTGACACAACGCCGTCGCTCCCACCA GAAGAACTGCGACCATTTATGGTCGGTCCAGGAATGTTGCATGAGATGCCACCTGTTGAA CAAGAAGCTGGACCCGAGAGACTCCGTGCTCCTCGTGAAGTCGCTGGGCGTAATCCTGCA GTAGTCTTCCTTGAATCACTGCTCCCATGGGTCGACTATGGTGACAATCATCAAGGTGCA AATGACGACGACAACGACGACGAATGA

Peptide Sequence

PEP ID	Zm00001d006124_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:2:199251572:199256700:1 gene:Zm00001d006124 transcript:Zm00001d006124_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (so /.../NCBI BLink).
Sequence	MSARLLRRVLQEREATPQDTDVADDDQSVEEEASPPRSSARNLFDLLDDGNGDGGEEDEK EDETEIIQAVSYTEQRHSVQKKANAVPETNKKSKKKKKKSKAEPSSTKAKDAQSLESILE DLCIEKNPIQQRAHQSDRAAGKEFETNEATHVASSVLAIDPKHLKGENEMRRIFGSKVVD SFENQRSMPSSSRQVRGARRVAHNPRKTLLVSPPSYWPPWDKSITMDLLEMKNGLNYFRY TYDPSVSHVQELFEAAKAANDLNAIAAILGKYPYHPESLLTFAELFKYSGEHQSSADAVE KCLFALECAWHPLFSPLQGNYQLKFNHDTNKPLFTALFSHMKNLDRRGCHRSALEVCKFL LSLDFDDPKGSLFCIDYFALRSQQYKWLEQFAEEYQCDNSLWLFPNFSFSLATARFYLEC DAASEGSDDADKSTSLDLMKQALMLHPMVLRKIVDKAPLKDSSWTQILRNVFFGSAKPGS PSLEHMINIYVERHYIMWRFPELQNLLKEAALLVIESLKQDNREALDWACVRKEAFSSDK NEYSHLLVSDFTDTTPSLPPEELRPFMVGPGMLHEMPPVEQEAGPERLRAPREVAGRNPA VVFLESLLPWVDYGDNHQGANDDDNDDE

Transcript Sequence

Transcript ID	Zm00001d006124_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:199251572:199256700:1 gene:Zm00001d006124 gene_biotype:protein_coding transcript_biotype:protein_coding description:CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (so /.../NCBI BLink).
Sequence	ACATTTCTGAAGTCGTCCTGGCTCCCTTGGGTCGGAAAAGGCCAAAAACTCATCGGCAAC CTCCATCTGAAAATTCTCTCGCCTGAACGTCCAAGCACAATCCCGAACCCTAACCAGCGC CCCAGCTCGCCGTCGGCATGTCCGCCAGGTTGCTCCGGCGAGTCCTCCAGGAGCGTGAGG CCACCCCGCAGGACACCGACGTCGCCGACGACGACCAGTCGGTGGAGGAGGAGGCTTCTC CTCCGCGGTCCTCCGCGCGGAACCTCTTCGATCTCCTCGACGACGGAAACGGCGACGGCG GCGAAGAAGATGAAAAGGAAGATGAAACAGAAATAATTCAAGCTGTGAGCTATACAGAAC AGAGACATTCTGTGCAAAAGAAAGCGAACGCTGTTCCCGAAACAAACAAAAAATCCAAGA AAAAGAAAAAAAAGAGCAAGGCGGAGCCGTCATCAACAAAGGCAAAGGATGCACAGTCGT TGGAGTCAATTCTGGAAGACTTATGTATTGAAAAGAATCCAATACAACAAAGAGCTCATC AGAGTGACAGGGCAGCTGGAAAGGAATTTGAGACAAATGAAGCTACTCATGTGGCATCCT CTGTTCTTGCAATAGACCCAAAACATCTAAAGGGTGAAAATGAGATGAGGCGCATTTTTG GATCAAAGGTAGTGGATTCATTTGAAAATCAACGGAGTATGCCAAGCAGTTCAAGGCAAG TACGTGGTGCTAGGCGTGTTGCCCATAATCCAAGAAAAACTCTTCTTGTGTCTCCACCTA GCTACTGGCCACCATGGGATAAGTCAATAACAATGGATCTTCTTGAGATGAAGAATGGTT TGAATTACTTCAGGTACACATATGACCCTTCAGTCAGCCATGTGCAGGAATTATTTGAAG CCGCCAAAGCAGCAAATGATCTCAATGCTATTGCAGCTATATTAGGGAAATATCCATATC ATCCAGAATCACTGTTGACATTTGCTGAGCTTTTCAAATATTCTGGAGAGCATCAATCAT CAGCAGATGCAGTGGAGAAATGCCTATTTGCATTGGAGTGTGCTTGGCATCCTTTATTTA GCCCACTTCAGGGCAACTATCAGTTGAAATTCAACCATGACACAAATAAGCCACTGTTTA CAGCACTCTTTAGTCACATGAAAAATCTGGATAGGCGTGGCTGCCATCGGTCTGCTTTAG AGGTCTGCAAGTTTCTGTTGTCACTGGACTTCGATGATCCAAAGGGTTCTCTATTTTGCA TTGATTACTTTGCTCTAAGATCACAACAGTACAAATGGCTGGAGCAATTTGCAGAAGAGT ACCAGTGTGATAACTCCTTGTGGTTATTTCCGAATTTCTCATTTTCTCTTGCTACTGCAC GGTTTTACCTTGAGTGTGATGCAGCGTCAGAGGGTTCTGATGATGCTGACAAATCAACAT CTCTTGATCTCATGAAGCAAGCTCTGATGCTTCATCCTATGGTGCTTCGCAAGATAGTTG ACAAGGCTCCTCTGAAAGACTCATCATGGACCCAAATACTCAGAAATGTATTCTTTGGAT CAGCAAAACCGGGAAGCCCTTCACTTGAGCATATGATCAATATATATGTGGAACGCCATT ATATCATGTGGAGATTCCCAGAACTGCAGAACTTGCTGAAAGAGGCTGCTCTTTTGGTGA TTGAATCACTAAAGCAGGATAACAGAGAAGCCCTGGACTGGGCTTGTGTTAGAAAAGAAG CATTCTCGTCAGACAAGAATGAGTACTCTCATCTGCTTGTTTCAGACTTCACTGACACAA CGCCGTCGCTCCCACCAGAAGAACTGCGACCATTTATGGTCGGTCCAGGAATGTTGCATG AGATGCCACCTGTTGAACAAGAAGCTGGACCCGAGAGACTCCGTGCTCCTCGTGAAGTCG CTGGGCGTAATCCTGCAGTAGTCTTCCTTGAATCACTGCTCCCATGGGTCGACTATGGTG ACAATCATCAAGGTGCAAATGACGACGACAACGACGACGAATGATCAGTTGGATGTATAA AGTGGCAAGGACTCACAATTGCGCCTGAATTATTGAATGTGACACATGATTAAGAAAAGT TGTTGTTGCTCATAGGGTCACCTCGGTACTATCAATAACCACCACAAGTCTGCAAGCCAA GTGGTCTTGTGTTTTTCATGATGGGACAGAGGCCTGAGGTTAAGTATGTATGGGGATCGA CCACTAAGTTGCCAAAACATGTATACCAAATTTTAGGGATCGAGTACCATCCTTGTCTGA GACTTGACTCTATGCTAATTCTGCAAACATAGTGAAAGGGTTTAATACTTTACGGTGCTG TTAGAAAATTTACCCCAGGCTAGGAAAGGCTTTCACAAAGAATTAAATGTCTTATTT