Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006113_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:2:198798988:198822151:1 gene:Zm00001d006113 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-box ATP-dependent RNA helicase 28
Sequence

ATGGTTGAGAAGTTAGCCCAATTCACTGATATCAGATGTTGTCTCATCGTTGGAGGTCTT
TCAACTAAGATTCAAGAAGTTGCTCTAAGGTCAATGCCTGACATAGTTGTAGCAACCCCT
GGGCGCATAATAGATCATCTGCGCAATTCTCTTTCTGTTGGGCTTGAAGATCTAGCTGTT
GTGATCCTTGATGAGGCTGATCGCTTGCTTGAATTGGGCTTCAGTGCTGAAATTCAAGAA
CTGATTCGTATGTGTCCTAAAAGGAGGCAAACTATGCTTTTCTCTGCTACAATGACAGAA
GAAATTGATGAACTTGTAAAGCTTTCACTAAACAAGCCTGTACGCCTTGAAGCTGATCCT
TCTCTGAAACGGCCTGCAACATTGACTGAAGAGGTTGTTAGGATACGACGAGCACGTGAG
TCAAATCAAGAAGCTGTTCTTCTTGCACTCTGTTTGAAGACTTTCAAGCGAAGTGTTATC
ATTTTTAGTGGGACAAAGCAATCTGCACACAGGTTAAAAATAATATTTGGTCTCTCTGGC
ATGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAGGCTCTGGAA
CTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGTGGGATT
GATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAGATGTGAAAACTTAT
CTTCATCGTGTTGGCCGCACTGCGCGGGCAGGAAGAGAAGGCTATGCTGTGACATTTGTA
ACCGATGATGATAGATGCCTCTTGAAAGCAATTGCAAAGAAGGCTGGTTCACAGCTGAAA
AGTCGCATTGTTGCAGAGAAACCTGTGGCTGAGTGTGCACGACTGATTGAGCAACTAGAA
GGCCAAATTTCTATCATCATTCGAGAAGAAAGGGTGGAAAGAGAAGCAAGAAAAGCTGAA
ATGGAAATCGCAAAGGCAGAAAATATGATAGCTCATAAGGATGAGATATACTCACGGCCA
AAGAGAACCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAGAA
TCTTTGGATCACGGTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGGCCGAAGACCTT
CGTCTAAAGGAGAAAAGGAGACGAGAACATGAGAAGAATCTACCAAGGAAGAAGCGCCGA
AGATTGGAGGCCCAGCGTGAGATGTTGGAAGATGAGGATGACGAGAAAACAAAGGAAAAT
GATAGAGGGAAGCAACCAATGAAAGGCCAATCTCTAGTGGATGCTGCTTACCGAAAGGCA
AAATCATTGAAGGCAGCCAGCAAACGGGCCCCTGGTGCAAGGAAAGGAAAGAAAGAGAAG
AATGAAAGGCAACATTCTGAGAAGGCTCCGAACAGGCATGAAGAGATGCGTGACCTGTTC
CAAAATGATATGAGTGAATGGAAACAGGGACGCTCCTCAAAGAAAAATAACAAATTTGCG
CCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGGTACAAGCGGAAGTAG

Peptide Sequence

PEP ID

Zm00001d006113_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:2:198798988:198822151:1 gene:Zm00001d006113 transcript:Zm00001d006113_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-box ATP-dependent RNA helicase 28
Sequence

MVEKLAQFTDIRCCLIVGGLSTKIQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAV
VILDEADRLLELGFSAEIQELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADP
SLKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSG
MKAAELHGNLTQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTY
LHRVGRTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQLKSRIVAEKPVAECARLIEQLE
GQISIIIREERVEREARKAEMEIAKAENMIAHKDEIYSRPKRTWFATEREKKLLAAAAKE
SLDHGKSTSGVISAKKAEDLRLKEKRRREHEKNLPRKKRRRLEAQREMLEDEDDEKTKEN
DRGKQPMKGQSLVDAAYRKAKSLKAASKRAPGARKGKKEKNERQHSEKAPNRHEEMRDLF
QNDMSEWKQGRSSKKNNKFAPKKSRNSFKSKARYKRK

Transcript Sequence

Transcript ID

Zm00001d006113_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:198798988:198822151:1 gene:Zm00001d006113 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-box ATP-dependent RNA helicase 28
Sequence

ACGAGAAGGGAGGAGGCGAGCTGGGAGAAGAGGATGATGCCCATGAGGAAGAAGATACGG
TCGATCAGAATGACACGAGTGGACCAGTTGATCCTTCTAATTTTTTCTCTTCTTCGGATC
GGGCATCATTTCATGCAAATTCATTCCTTGAGCTTAACTTGTCTCGTCCGCTAGTGCGAG
CTTGTGAAGCACTTGGCTACCAGAAACCAACTCCGATTCAGGCTGCTTGCATTCCTCTGG
CATTAACTGGAAGGGACATCTGTGGTAGTGCTATTACAGGATCTGGAAAGACAGCTGCTT
TCTCTTTGCCTGTGTTGGAACGTCTACTTTTTCGTCCAAAGCGTGTACCTGCAATTAGGG
TGCTTATTCTTACTCCAACCAGAGAGTTGGCTGCTCAGATTCATAGTATGGTTGAGAAGT
TAGCCCAATTCACTGATATCAGATGTTGTCTCATCGTTGGAGGTCTTTCAACTAAGATTC
AAGAAGTTGCTCTAAGGTCAATGCCTGACATAGTTGTAGCAACCCCTGGGCGCATAATAG
ATCATCTGCGCAATTCTCTTTCTGTTGGGCTTGAAGATCTAGCTGTTGTGATCCTTGATG
AGGCTGATCGCTTGCTTGAATTGGGCTTCAGTGCTGAAATTCAAGAACTGATTCGTATGT
GTCCTAAAAGGAGGCAAACTATGCTTTTCTCTGCTACAATGACAGAAGAAATTGATGAAC
TTGTAAAGCTTTCACTAAACAAGCCTGTACGCCTTGAAGCTGATCCTTCTCTGAAACGGC
CTGCAACATTGACTGAAGAGGTTGTTAGGATACGACGAGCACGTGAGTCAAATCAAGAAG
CTGTTCTTCTTGCACTCTGTTTGAAGACTTTCAAGCGAAGTGTTATCATTTTTAGTGGGA
CAAAGCAATCTGCACACAGGTTAAAAATAATATTTGGTCTCTCTGGCATGAAAGCAGCTG
AACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAGGCTCTGGAACTTTTCAAGAAAA
AAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGTGGGATTGATATTGTTGGTG
TTCAGACTGTAATAAATTTCGCATGCCCAAGAGATGTGAAAACTTATCTTCATCGTGTTG
GCCGCACTGCGCGGGCAGGAAGAGAAGGCTATGCTGTGACATTTGTAACCGATGATGATA
GATGCCTCTTGAAAGCAATTGCAAAGAAGGCTGGTTCACAGCTGAAAAGTCGCATTGTTG
CAGAGAAACCTGTGGCTGAGTGTGCACGACTGATTGAGCAACTAGAAGGCCAAATTTCTA
TCATCATTCGAGAAGAAAGGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAA
AGGCAGAAAATATGATAGCTCATAAGGATGAGATATACTCACGGCCAAAGAGAACCTGGT
TTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAGAATCTTTGGATCACG
GTAAGAGTACCTCTGGAGTTATTAGTGCTAAGAAGGCCGAAGACCTTCGTCTAAAGGAGA
AAAGGAGACGAGAACATGAGAAGAATCTACCAAGGAAGAAGCGCCGAAGATTGGAGGCCC
AGCGTGAGATGTTGGAAGATGAGGATGACGAGAAAACAAAGGAAAATGATAGAGGGAAGC
AACCAATGAAAGGCCAATCTCTAGTGGATGCTGCTTACCGAAAGGCAAAATCATTGAAGG
CAGCCAGCAAACGGGCCCCTGGTGCAAGGAAAGGAAAGAAAGAGAAGAATGAAAGGCAAC
ATTCTGAGAAGGCTCCGAACAGGCATGAAGAGATGCGTGACCTGTTCCAAAATGATATGA
GTGAATGGAAACAGGGACGCTCCTCAAAGAAAAATAACAAATTTGCGCCCAAAAAATCAA
GGAACTCTTTTAAGAGCAAAGCAAGGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGG
GTTTATATTACATTCCCTTGTTTCAATTTTGACTGACTGATCCTGAAGAAATATCTGGGA
TCCAGATGTTTGCAGTTAATTCAAGTTTGCTTTAAACATATTCTCATATCATGTATTGAA
ACTCACCGTTTTCTGGGG