Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006108_T015
CDS Infomation

cds chromosome:B73_RefGen_v4:2:198340082:198346106:1 gene:Zm00001d006108 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence

ATGAGAAGCTGTTACGATAACTTGCTTTCTGTTGCTGCAGCAATTGCAAATAGTGCATAT
GAGTTCTCTGAAGCACTTCAAGAAATGGGAACTTGTTTGCTTAAAAGAGTTACGCCAAAT
AAGGATGGAATAAATGATAAAGTTTTGCTGTTGCTTGGGAAATCACAATTTGAACTTCGG
AAACTTTTAGATAGTTATCGTGTGCATGTTCTTAACACCATCACCACTCCATCGCTGTCG
CTTCTTAATGAACTTCAAACTGTGGAGGAAATGAAGCACCAATGCGATGAAAAAAAAGAA
TTGTATGAATTCATGGTAAACACGCAGAAAGAAAAGGGAAGGTCTAAGAATGCTAAAGGT
GATAATGGAGCATCAGAGCAATTGAAACAAGCTCAGGAAGATTATCAAGAGGAAGCAACT
CTTTTTCTATTCCGGTTGAAGTCATTGAAGCAAGGACAGTTCCGAAGTCTTTTTACACAA
GCTGCTCGGCATCATGCTGCACAGCTAAATTTGTTCCGAAAGGGAGTCAAGTCCCTTGAG
GCTGTAGAGCCACATGTTAGGCTCGCTGCTGAGCAGCAACACATTGATCATCAGTTCAGC
GCACTTGAGGAAGAGGATTACCTTGTTGAGGATGAAAATGATGACGATTACAATGGCAGT
CATGATGGAGAGTTATCTTTTGATTATGGAGAAAATAAGGAAGTTGAGGAATCTGGTAAT
GCTTCTAGGAATCATACAGAGGGTTTTTTTAACAGAAGCAAAGAAGAGTATTCTTCTGTT
CCACATGAAAGACAAAGAATCGTAAGTCAGTCAGCACCACTTTTTCCTGAGAAAAAGCTC
AATACAGAAGAGAGAATAAAAGATTTGCGGCGTTCTGCAACAAGGAAGTTGAATACTTAT
GTTTTGCCTACTCCAAATGACGTTGGAGCTACTTCTCAGAGAGCATCAGGAAATCCTACT
TCTGAACCTCTCGAGAGTAAAGGTGCCTTCCATTCATCTCCACTCCACTCATCTGCAGAC
ATAAGAGATTTGGGAGACAGTAATCTACCTAGTCCTACAAGATTGTCTAACGTACAGTCT
GTGCTGAAAGATAGCAATACCAATAAAACAGAAACAAGGAAAGTACTCCCAGTGGGTGAT
CTGGCTTTACCTAGCTATCATGACCTGAAGACTTCTGATAACAAAAAAGTGAAAAGAGGG
TCATTTTCTGGCCCAATAGCTTCCAGACCACGGTCAACAGAGAACATTGATGTTATTTCT
GCAGCGCCTAGGCATAGCTCAGCACATCAGCCAGTGCACATGAGAGTATCCCCCGGCAAC
TCGCCGCCACCCATTTCCTCACCGAAGATCAAGGAACTTCATGAGCTTCCTCGACCACCT
GTTAATACATCAAAAAATATAGCATTCCCCAGTTTAGTTGCCCACTCCGCCCCATTGGCA
CCAAATCCTGCATCTTTGACTCCCAAAGTTCAAGATCATTTTAGGACAAAACAAACGCTC
CAAAGAACTGCTTCACCTTTACCAACTCCACCACCTGGATCTATAGCCCGCAGTTTTTCT
ATACCTTCTAGGGGTATTTCAGACAGTAAAGAGACAGAAGATCAACACAAGGGAGCTGCC
AGAATGAGTCTTTCTTCTCTTCCTTCAGCACAAACATTCTTGGAAGATCGTCAGCCATTG
TCATCAGCTGCTGGATCGGTCAGCAAAACATAG

Peptide Sequence

PEP ID

Zm00001d006108_P015
PEP Infomation

pep chromosome:B73_RefGen_v4:2:198340082:198346106:1 gene:Zm00001d006108 transcript:Zm00001d006108_T015 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence

MRSCYDNLLSVAAAIANSAYEFSEALQEMGTCLLKRVTPNKDGINDKVLLLLGKSQFELR
KLLDSYRVHVLNTITTPSLSLLNELQTVEEMKHQCDEKKELYEFMVNTQKEKGRSKNAKG
DNGASEQLKQAQEDYQEEATLFLFRLKSLKQGQFRSLFTQAARHHAAQLNLFRKGVKSLE
AVEPHVRLAAEQQHIDHQFSALEEEDYLVEDENDDDYNGSHDGELSFDYGENKEVEESGN
ASRNHTEGFFNRSKEEYSSVPHERQRIVSQSAPLFPEKKLNTEERIKDLRRSATRKLNTY
VLPTPNDVGATSQRASGNPTSEPLESKGAFHSSPLHSSADIRDLGDSNLPSPTRLSNVQS
VLKDSNTNKTETRKVLPVGDLALPSYHDLKTSDNKKVKRGSFSGPIASRPRSTENIDVIS
AAPRHSSAHQPVHMRVSPGNSPPPISSPKIKELHELPRPPVNTSKNIAFPSLVAHSAPLA
PNPASLTPKVQDHFRTKQTLQRTASPLPTPPPGSIARSFSIPSRGISDSKETEDQHKGAA
RMSLSSLPSAQTFLEDRQPLSSAAGSVSKT

Transcript Sequence

Transcript ID

Zm00001d006108_T015
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:198340082:198346106:1 gene:Zm00001d006108 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence

GAGCCCATCGCCGGCCGGCCACGGACGATCCGGGACTCCATCCGGCGCCTGCCCTGAATC
GGCTTCGCGGGGCGCAAGGAGCGAGAGAATGAAGTCGTCGCTGCGGAAGCTGCGGGGCTT
CGCGCTGCAGCGCCAGGAGCAGCGGGTGGACCGGGACCGCGGCCGGGGCCACGCCACCGC
CGCCGCCACCGCGGCGGACGAGCTCCTCGCGGCTGCCCAGATATGAGAAGCTGTTACGAT
AACTTGCTTTCTGTTGCTGCAGCAATTGCAAATAGTGCATATGAGTTCTCTGAAGCACTT
CAAGAAATGGGAACTTGTTTGCTTAAAAGAGTTACGCCAAATAAGGATGGAATAAATGAT
AAAGTTTTGCTGTTGCTTGGGAAATCACAATTTGAACTTCGGAAACTTTTAGATAGTTAT
CGTGTGCATGTTCTTAACACCATCACCACTCCATCGCTGTCGCTTCTTAATGAACTTCAA
ACTGTGGAGGAAATGAAGCACCAATGCGATGAAAAAAAAGAATTGTATGAATTCATGGTA
AACACGCAGAAAGAAAAGGGAAGGTCTAAGAATGCTAAAGGTGATAATGGAGCATCAGAG
CAATTGAAACAAGCTCAGGAAGATTATCAAGAGGAAGCAACTCTTTTTCTATTCCGGTTG
AAGTCATTGAAGCAAGGACAGTTCCGAAGTCTTTTTACACAAGCTGCTCGGCATCATGCT
GCACAGCTAAATTTGTTCCGAAAGGGAGTCAAGTCCCTTGAGGCTGTAGAGCCACATGTT
AGGCTCGCTGCTGAGCAGCAACACATTGATCATCAGTTCAGCGCACTTGAGGAAGAGGAT
TACCTTGTTGAGGATGAAAATGATGACGATTACAATGGCAGTCATGATGGAGAGTTATCT
TTTGATTATGGAGAAAATAAGGAAGTTGAGGAATCTGGTAATGCTTCTAGGAATCATACA
GAGGGTTTTTTTAACAGAAGCAAAGAAGAGTATTCTTCTGTTCCACATGAAAGACAAAGA
ATCGTAAGTCAGTCAGCACCACTTTTTCCTGAGAAAAAGCTCAATACAGAAGAGAGAATA
AAAGATTTGCGGCGTTCTGCAACAAGGAAGTTGAATACTTATGTTTTGCCTACTCCAAAT
GACGTTGGAGCTACTTCTCAGAGAGCATCAGGAAATCCTACTTCTGAACCTCTCGAGAGT
AAAGGTGCCTTCCATTCATCTCCACTCCACTCATCTGCAGACATAAGAGATTTGGGAGAC
AGTAATCTACCTAGTCCTACAAGATTGTCTAACGTACAGTCTGTGCTGAAAGATAGCAAT
ACCAATAAAACAGAAACAAGGAAAGTACTCCCAGTGGGTGATCTGGCTTTACCTAGCTAT
CATGACCTGAAGACTTCTGATAACAAAAAAGTGAAAAGAGGGTCATTTTCTGGCCCAATA
GCTTCCAGACCACGGTCAACAGAGAACATTGATGTTATTTCTGCAGCGCCTAGGCATAGC
TCAGCACATCAGCCAGTGCACATGAGAGTATCCCCCGGCAACTCGCCGCCACCCATTTCC
TCACCGAAGATCAAGGAACTTCATGAGCTTCCTCGACCACCTGTTAATACATCAAAAAAT
ATAGCATTCCCCAGTTTAGTTGCCCACTCCGCCCCATTGGCACCAAATCCTGCATCTTTG
ACTCCCAAAGTTCAAGATCATTTTAGGACAAAACAAACGCTCCAAAGAACTGCTTCACCT
TTACCAACTCCACCACCTGGATCTATAGCCCGCAGTTTTTCTATACCTTCTAGGGGTATT
TCAGACAGTAAAGAGACAGAAGATCAACACAAGGGAGCTGCCAGAATGAGTCTTTCTTCT
CTTCCTTCAGCACAAACATTCTTGGAAGATCGTCAGCCATTGTCATCAGCTGCTGGATCG
GTCAGCAAAACATAGGGTGAGTTTTCACTACCTGTGATGTTATAACCTCACAATTTTTAA
CATTGGTGCACCTGAAGCCTCCACGTGAAGCTGTTGTTCTATGTTCATTGATC