Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d006011_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:195231015:195246454:-1 gene:Zm00001d006011 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase UPL5
Sequence

ATGTCCGCTGCGCTCGCCTGTCTCCGCCGCACCTCCAAGCGCCGCCGAGACGCGCCCGAT
CATGCCCTCCCCCCATCATCGAAGCAGCCGCTGATGGCCCACGCCGGCGCCGGCGCTGGC
GCCGCCGAGTCGTCCTCGTCGGCCTCGGCCTCCGCTTCGGGGGGCGATGGAGCTTCCGCA
GCGGCGGCGGCGGCCTCCGCCTCGTCTCCCCCTGCGTCGCCGCGGGAGGTGCACTTCTTC
GTGCGCGCCACCGATTCTAGGACCATCGCGATGCACGCGGGGTGTGACGATACTGTCGGC
GCCGTGCTTGATCATCTCGGCGCCTGCGGGTATGGCCGCGATTTGCGGCTGCTCTACGCG
GGGCGGCAGCTCGCGCCGGAGGCCACCCTCGCCGAGCTCCATCTCCCGCCGGATTCCACA
CTTCACCTTTTGGCGCGCCTCAGGTCCACCCAGCATCCTCACGCGTGGCAACTCGCGTCG
CACATCGCCGGCACCGCCGCCGCCGCCGCCGCCGCCGCGGAGTCCGAGCCGTCCAGGATC
CCCGCCGCCGCGTTCTCCCTCGACGAACTCGTCAGGGAGTTCATCCTCCGCGCCCACCGC
GCCAACCTGGGGCTTCGCCCCGATCGCGCCTCTACTGACGAAGATCGGTTTGCGGCCGAC
CACGCCGCTGAGTACGTGGACATCTTCCTCCAGGCGGGCGCCGCCTTAGCGCTGGTTCGC
CTCTACCTCTCAAATTCCCCCTTCCGCTCTCACGCCGAGAGTGCCATCAAATGTTTTGTC
GCCACGGACCCTTATTCCTTGCCGATGGACTTGCTAGTCGTGACGGCACCAGTGCTGCTT
GAATTCTGCCGCTTGCTCTCCTTGGCTGCAGGCAAGAAGGAATTACTATATAGATCATGC
CGTCGTACACTTGCCTCAGTTTTATCAACTCGTCCCAGGCTGCCCCCTTCTATGAACTCA
CCAACCAGATTGATCGAGCAAGTCCTGCCATTCGCCCGTGAAACAGTGGATGTGGTCCTT
GATGGACTTGCATCAATGCCAATGATTATATCGCCTAGTGATCTTGATGAGTTCTCAAAT
TTCCTCAAAGTGATGTGCCAGCAAGCACGCCATTGGATTTCCGGTGAGGGGCCGATGCCC
AGTAATCTGTACAGCAGGGAGTCTGAGCATGGCGACACATGGATATGGAGGTTTCACAAC
ATGTCGATGGACATGCTGAAAAGGTTGGATGAGTGCTTGAAGACATTGGAGATGGACCTG
TCATTATCATCAGAGAGTGTCGGGGTCATGGAAAGTCAAACCACATGGGCTGCTCGATCA
CACATCCTGGTCATGTTGACTGAACTCGATTTCATCTCAGCGATTTATGAGGATGTGGGG
CACAACCTACAGCTTGTGTTGCTGGCACACAGGGCGCCACTCAATGCTCTTGTCCGTTGT
TCCAAGAGAAATGAGCGTCTACATTGGCTCGTGAAGCATAAGAATCTCCTTTGCTTTGAA
GCAAGAAGGAATTTAGTCTTCATGATGCTCCCTGAAGGGAAGGATGACTTTGGGGAGCTG
CATGAGATGTTAATTGATCGATCACATTTACTTGATGAATCCTTTAATTACATCGCACAG
GCGAAACAAACTGAACTTCGTGGTGGGCTGTTTATGGAGTTTAAGAATGAGGAAGCTACA
GGTCCTGGCGTTCTAAGGGAATGGTTTTGTTTAGTGTGCCAAGCTCTTTTCAGTTCGAAG
CAAGTTCTCTTCTCACCCTGTCCGGAGGATAAACGAAGGTTCTACTTGAACGAAACATCT
GCTGTGGATCCACTGCACCTGAAGTACTTCACTTTTGCGGGGCGGATAATTGGATTAGCC
TTGATGCATAAAGTACAAGTTGGAGTTGTGATAGACCGTACTCTGTTCTTGCATCTTGCT
GGGAGAAGTATTACGTTAGAAGATATTTCTGTTGCAGATCCTGTCAAATATGCAAGCTGT
AAAAAAATTCTAGAGATGGATGCTGCTGAAATTGATAATCTATACCTAACATTTTCCCGA
GGAGCTCATGAATTAGGTACTGAAAAGATTATTGATCTTTGTCCAGGAGGACAGGATATC
AGTGTGAATATTGGGAACAGAGAGCATTACATTGATCTTCTTATTAAGAATATCTTTGTG
GACTCTATTTCATCTCAGCTAACCCATTTCACGGATGGATTTGCTGATATACTAGTTAAT
CCCAAGCGCCGGGAAGAGTTTTTCGAGTGTTTAGATCTAGAAGACTTTGATCGACTGTTA
GGGGGGAGCAGCAATGCAATAAATCTGCAAGATTGGAAATCACATACTCAATATAATGGC
TACAAAGAAAAGGATCGCCAGATTACCCTGTTCTGGAAGGCTGTGGAGCGCATGTCAATC
GAGAGACAGAGGCAGCTCCTCTTCTTCTGGACTTCGGTGAAGTATTTACCATCAGACGGG
TTTTGTGGACTGAGCTCCAAACTTTTTATTTACAAGACATCAGATTCGCCCGACCGGCTC
CCATCATCGCAGACCTGCTTCTACCGGCTCTGCCTCCCTCCTTACACATCCTTGAAAATG
ATGGAAAACCAGCTGCAGAAGATCACAGAAGAGCATGTGAGCTGCAGCTTCGGTACATGG
TAG

Peptide Sequence

PEP ID

Zm00001d006011_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:195231015:195246454:-1 gene:Zm00001d006011 transcript:Zm00001d006011_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase UPL5
Sequence

MSAALACLRRTSKRRRDAPDHALPPSSKQPLMAHAGAGAGAAESSSSASASASGGDGASA
AAAAASASSPPASPREVHFFVRATDSRTIAMHAGCDDTVGAVLDHLGACGYGRDLRLLYA
GRQLAPEATLAELHLPPDSTLHLLARLRSTQHPHAWQLASHIAGTAAAAAAAAESEPSRI
PAAAFSLDELVREFILRAHRANLGLRPDRASTDEDRFAADHAAEYVDIFLQAGAALALVR
LYLSNSPFRSHAESAIKCFVATDPYSLPMDLLVVTAPVLLEFCRLLSLAAGKKELLYRSC
RRTLASVLSTRPRLPPSMNSPTRLIEQVLPFARETVDVVLDGLASMPMIISPSDLDEFSN
FLKVMCQQARHWISGEGPMPSNLYSRESEHGDTWIWRFHNMSMDMLKRLDECLKTLEMDL
SLSSESVGVMESQTTWAARSHILVMLTELDFISAIYEDVGHNLQLVLLAHRAPLNALVRC
SKRNERLHWLVKHKNLLCFEARRNLVFMMLPEGKDDFGELHEMLIDRSHLLDESFNYIAQ
AKQTELRGGLFMEFKNEEATGPGVLREWFCLVCQALFSSKQVLFSPCPEDKRRFYLNETS
AVDPLHLKYFTFAGRIIGLALMHKVQVGVVIDRTLFLHLAGRSITLEDISVADPVKYASC
KKILEMDAAEIDNLYLTFSRGAHELGTEKIIDLCPGGQDISVNIGNREHYIDLLIKNIFV
DSISSQLTHFTDGFADILVNPKRREEFFECLDLEDFDRLLGGSSNAINLQDWKSHTQYNG
YKEKDRQITLFWKAVERMSIERQRQLLFFWTSVKYLPSDGFCGLSSKLFIYKTSDSPDRL
PSSQTCFYRLCLPPYTSLKMMENQLQKITEEHVSCSFGTW

Transcript Sequence

Transcript ID

Zm00001d006011_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:195231015:195246454:-1 gene:Zm00001d006011 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase UPL5
Sequence

GTCAAAGCTCAAACCGGAAGAAAGGCCACGCCCAAATAAACATCTCACACTCCCCACCCC
ACTTCATCGAGCTTCCTCCCCCAAATTCCGGTCCTCCTAAACCCTCGCTCGCTACCTCCT
CATCGGCGCGACCCCAATTCCGCCCTCCCCGACCTCGATGAACCCGATCTAAGCATGTCC
GCTGCGCTCGCCTGTCTCCGCCGCACCTCCAAGCGCCGCCGAGACGCGCCCGATCATGCC
CTCCCCCCATCATCGAAGCAGCCGCTGATGGCCCACGCCGGCGCCGGCGCTGGCGCCGCC
GAGTCGTCCTCGTCGGCCTCGGCCTCCGCTTCGGGGGGCGATGGAGCTTCCGCAGCGGCG
GCGGCGGCCTCCGCCTCGTCTCCCCCTGCGTCGCCGCGGGAGGTGCACTTCTTCGTGCGC
GCCACCGATTCTAGGACCATCGCGATGCACGCGGGGTGTGACGATACTGTCGGCGCCGTG
CTTGATCATCTCGGCGCCTGCGGGTATGGCCGCGATTTGCGGCTGCTCTACGCGGGGCGG
CAGCTCGCGCCGGAGGCCACCCTCGCCGAGCTCCATCTCCCGCCGGATTCCACACTTCAC
CTTTTGGCGCGCCTCAGGTCCACCCAGCATCCTCACGCGTGGCAACTCGCGTCGCACATC
GCCGGCACCGCCGCCGCCGCCGCCGCCGCCGCGGAGTCCGAGCCGTCCAGGATCCCCGCC
GCCGCGTTCTCCCTCGACGAACTCGTCAGGGAGTTCATCCTCCGCGCCCACCGCGCCAAC
CTGGGGCTTCGCCCCGATCGCGCCTCTACTGACGAAGATCGGTTTGCGGCCGACCACGCC
GCTGAGTACGTGGACATCTTCCTCCAGGCGGGCGCCGCCTTAGCGCTGGTTCGCCTCTAC
CTCTCAAATTCCCCCTTCCGCTCTCACGCCGAGAGTGCCATCAAATGTTTTGTCGCCACG
GACCCTTATTCCTTGCCGATGGACTTGCTAGTCGTGACGGCACCAGTGCTGCTTGAATTC
TGCCGCTTGCTCTCCTTGGCTGCAGGCAAGAAGGAATTACTATATAGATCATGCCGTCGT
ACACTTGCCTCAGTTTTATCAACTCGTCCCAGGCTGCCCCCTTCTATGAACTCACCAACC
AGATTGATCGAGCAAGTCCTGCCATTCGCCCGTGAAACAGTGGATGTGGTCCTTGATGGA
CTTGCATCAATGCCAATGATTATATCGCCTAGTGATCTTGATGAGTTCTCAAATTTCCTC
AAAGTGATGTGCCAGCAAGCACGCCATTGGATTTCCGGTGAGGGGCCGATGCCCAGTAAT
CTGTACAGCAGGGAGTCTGAGCATGGCGACACATGGATATGGAGGTTTCACAACATGTCG
ATGGACATGCTGAAAAGGTTGGATGAGTGCTTGAAGACATTGGAGATGGACCTGTCATTA
TCATCAGAGAGTGTCGGGGTCATGGAAAGTCAAACCACATGGGCTGCTCGATCACACATC
CTGGTCATGTTGACTGAACTCGATTTCATCTCAGCGATTTATGAGGATGTGGGGCACAAC
CTACAGCTTGTGTTGCTGGCACACAGGGCGCCACTCAATGCTCTTGTCCGTTGTTCCAAG
AGAAATGAGCGTCTACATTGGCTCGTGAAGCATAAGAATCTCCTTTGCTTTGAAGCAAGA
AGGAATTTAGTCTTCATGATGCTCCCTGAAGGGAAGGATGACTTTGGGGAGCTGCATGAG
ATGTTAATTGATCGATCACATTTACTTGATGAATCCTTTAATTACATCGCACAGGCGAAA
CAAACTGAACTTCGTGGTGGGCTGTTTATGGAGTTTAAGAATGAGGAAGCTACAGGTCCT
GGCGTTCTAAGGGAATGGTTTTGTTTAGTGTGCCAAGCTCTTTTCAGTTCGAAGCAAGTT
CTCTTCTCACCCTGTCCGGAGGATAAACGAAGGTTCTACTTGAACGAAACATCTGCTGTG
GATCCACTGCACCTGAAGTACTTCACTTTTGCGGGGCGGATAATTGGATTAGCCTTGATG
CATAAAGTACAAGTTGGAGTTGTGATAGACCGTACTCTGTTCTTGCATCTTGCTGGGAGA
AGTATTACGTTAGAAGATATTTCTGTTGCAGATCCTGTCAAATATGCAAGCTGTAAAAAA
ATTCTAGAGATGGATGCTGCTGAAATTGATAATCTATACCTAACATTTTCCCGAGGAGCT
CATGAATTAGGTACTGAAAAGATTATTGATCTTTGTCCAGGAGGACAGGATATCAGTGTG
AATATTGGGAACAGAGAGCATTACATTGATCTTCTTATTAAGAATATCTTTGTGGACTCT
ATTTCATCTCAGCTAACCCATTTCACGGATGGATTTGCTGATATACTAGTTAATCCCAAG
CGCCGGGAAGAGTTTTTCGAGTGTTTAGATCTAGAAGACTTTGATCGACTGTTAGGGGGG
AGCAGCAATGCAATAAATCTGCAAGATTGGAAATCACATACTCAATATAATGGCTACAAA
GAAAAGGATCGCCAGATTACCCTGTTCTGGAAGGCTGTGGAGCGCATGTCAATCGAGAGA
CAGAGGCAGCTCCTCTTCTTCTGGACTTCGGTGAAGTATTTACCATCAGACGGGTTTTGT
GGACTGAGCTCCAAACTTTTTATTTACAAGACATCAGATTCGCCCGACCGGCTCCCATCA
TCGCAGACCTGCTTCTACCGGCTCTGCCTCCCTCCTTACACATCCTTGAAAATGATGGAA
AACCAGCTGCAGAAGATCACAGAAGAGCATGTGAGCTGCAGCTTCGGTACATGGTAGTTG
CTGCTGTCATGGATTCTGAACCGGTATATTCTGTACATACGGTAGGCTAGCGACACCCTG
CTGCCTCATTGAATCTGTTCCTAGGGCTTGAGGTAATAGGCTTTCTTTCTTCTTTTGTAT
GTATCCTGGGTTTAGTGTTCCGAGACTTCTATTTAACCTAATGCAGAAGGAATTGATAGA
AAGCAGGTTCCTTTTGTTTTCTAAAGAGGTGTGAGTGTGACGCTGTGTAGTCCAGCCGGT
GGCAGTAATGTAATAACATGTGCATGTAGCTGCATTGTGCTGAGTGCTGACACTCCGATT
ACCGGTGAACGGGATGGTGGGCTATTCTAGTTGATCCGTTACCAAACCAAAGCATGGCAT
TGTTTGTTCTTC